rna1353, rna1353 (mRNA) Nannochloropsis gaditana

Overview
Namerna1353
Unique Namerna1353
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1171
Alignment locationCM002457.1:421696..423419 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100136g11.3170.mrna
Orig protein idgnl|cribi|Naga_100136g11.3170
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:421696..423419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100136g11gene1307Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1353rna1353-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29319.1cds1351Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1353 ID=rna1353|Name=rna1353|organism=Nannochloropsis gaditana|type=mRNA|length=1171bp
GGTCCACATCCGTGGTGCCCTCCCTCGTGCGGACGAAGATGTGTCGGGAA
AGATTACCCGGAGCATGCCATGGCCCCTGGTTGAGCTGGACATCAGACCT
ACGACGTCAAAGATTTATCAGCTTTCTAGTGATTGAGTCTCACTCATAGC
CCATTACTGAGCAGGTATATATAAAGTTTCAGGATTGACAAATTTCCTGT
GACTTATCTGCCCTCTTTGGACCTCAGGCGTGGACCTAGCAAAAGCAACC
GCACGTCTACGCGGTCATGCGGCGGACTTCGAGAAGACAAATGGCTTGCG
TGCATTGTACAACAGAAGTACATGTGGAGGTTCCCGACGTACAAGTACCT
CTTGCCGTTTCCTCGCCCGCATCGATTCTATTTCTCTGTGTGGGCGTCAT
TGCACTCTTGCTTCCGAGTGCGATGGGCTACGATGCCGCACCATCATGCT
CCGCATTCTTGACGCCGCATTCACCGTCCTCCTTCCAATTATTTGCGTCA
TCTCTTTGGAAGTGCTCTCGGTGCTCTTCTATTCCTTTCTCCTGTTCCCG
CTTCATAGTCTCCCGACAACTCGTTATGAAAGGCGCCGCAGACCCCCACC
ACACTGTCAAGCGCATTTGTGCCACAAACAAATACGCGAAATCATCTTAC
GAGATCGGAAAGAAATTTGAAGCGGGTATCTCACTAGTTGGTACGGAAAT
CGGTCCGGTGGCTAGCGGGCAGTGTCAGCTAAGAGATGCCTACTGCCGGG
TACGAGACGGGGAGCTCTGGATTCACAATCTCTTCATAGGGCCGCATAAA
ACGACTGGAAAGTATTTTCAGCACGCCGAAAAACGACCACGACGCTTACT
AGTGCACAAAAAGGAGATACTGGAATTGAAATATGCCTCGGACAGGGACG
GACAAACCATCGTTCCCTTATGCATTTATCTGACGGCCACCCACCGTGTG
AAAGTAGAGGTGGCGATCGGAAGGGGAATCAAAAAGTACGACAAGCGAGA
AGCAGTCAAGCAGCGCGAGATAAAGCGGGGGTTCGAGCGGCTACTTAAAA
CCTACTGATTGGTTTTGGGTGTGAGCTAGACAGGCGTATGTCGGGTAACA
TAGTGCGTTCCCATGTGCAGGAAGTGTCCCCAAACGTCTTAAAATAATGT
AAAAACTGGACAAACTTTATT
back to top

protein sequence of rna1353

>rna1353-protein ID=rna1353-protein|Name=rna1353|organism=Nannochloropsis gaditana|type=polypeptide|length=253bp
MCNGSYHTRMRIRLTWEPRSFRIIITCLLMGLSCPSGCPPPPFKPKNTTA
YIIHQMARILSTNRRLVFVFGVLVFLMCFVASGMGESARSARKVAAASEF
DEEETEALKDWEEDGEWDEEEDEDQDLEDGFEDEEEDEFEDEEDGFEEED
EREMTDYEAEEEDDIDDEGPEWDEALDQIEDGDGPSLDLGDLEGLIDKED
LMRKLEEMGLDLDDVHISVDMGEDAMEEDEEEELEEEDEDEEDEEDEEEY
ENF
back to top

mRNA from alignment at CM002457.1:421696..423419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1353 ID=rna1353|Name=rna1353|organism=Nannochloropsis gaditana|type=mRNA|length=1724bp|location=Sequence derived from alignment at CM002457.1:421696..423419- (Nannochloropsis gaditana)
TGTCGTTGCTAGTTTGATAAGGCATATTCGATGTCTACGGCGTGGCATTG
GGCATGTAACAATCGTGTATGGCTCGAATCTGAGCCCCACGGGAGCAATA
TTCGCCTTGCCTCCCTGGGCCCTCCATCCACATGCTGCCTTGGCGTCTGT
GATTTAGTTACGAGGAGACACCACATTCCGAGAAATTTCATGTATAAGAT
GTTGACAAGATACGCGTAATGTGCAATGGATCGTATCATACTCGGATGCG
TATTCGACTGACCTGGGAGCCGCGAAGTTTCAGGATTATCATCACTTGTT
TACTTATGGGCCTCAGCTGTCCCTCCGGTTGCCCCCCTCCCCCCTTCAAG
CCAAAAAACACAACAGCGTATATCATCCATCAAATGGCAAGAATTCTTAG
CACGAATCGTCGCCTGGTCTTTGTCTTCGGCGTTCTGGTCTTTTTAATGT
GCTTCGTCGCCAGTGGTATGGGCGAGAGTGCCCGGAGCGCCAGGAAGGTG
GCGGCTGCTTCGGAATTTGACGAAGAGGAGACCGAGGCCTTGAAGGATTG
GGAGGAGGATGGTGAATGGGACGAGGAAGAGGATGAGGATCAAGACTTGG
AGGACGGCTTTGAGGATGAGGAGGAGGATGAATTCGAAGACGAGGAAGAC
GGGTTCGAGGAGGAGGACGAAAGGGAAATGACGGACTATGAAGCTGAAGA
GGAAGATGACATCGACGATGAGGGCCCGGAGTGGGACGAGGCTTTGGACC
AGATCGAAGACGGAGACGGCCCCTCTCTGGACCTCGGGGACTTGGAGGGC
CTGATCGACAAGGAAGACCTCATGCGCAAGCTGGAGGAGATGGGACTTGA
CTTGGATGTAAGTCTACTCCGAATGCGATTCAACAATAGTCTGGATATGG
CCTTTTCTTGGAAGGATACCTAGAGTGTTTTTATAGCCACTCGCGCAGAA
GTCAAAATTGTGAAGATGTGATAGGCAGGATGTGGAGGGCGGGATACGTG
GTGCTCAGGGACATGTGTTTGTGCGCCAGCATTTGTACGATTCTTTCATC
TACACGTATAGTGCGTGATTCTTCTTTGTTGTGTGTCATTATAACATGCA
CGTGCTACTTGGCCATGGAACTCTTAACATGCGCAACTTGTGAACAACCT
GATCTCATCACTCACGTCTTCGCCTACCCCTACAGGATGTCCATATCAGC
GTCGATATGGGCGAAGATGCGATGGAAGAGGACGAGGAGGAAGAGCTGGA
AGAGGAGGACGAAGATGAAGAGGATGAGGAGGATGAAGAGGAATACGAAA
ACTTTTAGAACATACGTGCAGGGATAGCGAAACGCGAAATTGCAAGAAAG
TTCGGGACGTGGAGAGAAGAGTTGATATGCTTATAAGGAAGCTAATAGGG
AAGAATCAAAAGAGGAAAAAGCTGCCTTAAGAATTGGAGCCTCTGGTCAT
AAAAAGAAACGGATCCATGAGAAGGCATCCAGGCCTAGTCGCGAAAGTGT
TACACTACGGGAGTCGTGAGCAAAAAATGGATCGAATTAGCTCACAAACA
TGAACAATATAAAGAAGGAAGAATAGAAAAAAGGGAGCTTACAACAAGAA
TCTGGCTCGCAATGTCTTTTTCGTCACTCAAAGCCTCTTGGCCCCTTATC
GCGCAGCTCCAGCAAATGGTGAATTTTCTCGAACGGTGCCTTGGTGGCTG
CCGATGACATTCAAAAGAAACATC
back to top

Coding sequence (CDS) from alignment at CM002457.1:421696..423419-

>rna1353 ID=rna1353|Name=rna1353|organism=Nannochloropsis gaditana|type=CDS|length=1524bp|location=Sequence derived from alignment at CM002457.1:421696..423419- (Nannochloropsis gaditana)
GATGTCCATATCAGCGTCGATATGGGCGAAGATGCGATGGAAGAGGACGA
GGAGGAAGAGCTGGAAGAGGAGGACGAAGATGAAGAGGATGAGGAGGATG
AAGAGGAATACGAAAACTTTTAGATGTGCAATGGATCGTATCATACTCGG
ATGCGTATTCGACTGACCTGGGAGCCGCGAAGTTTCAGGATTATCATCAC
TTGTTTACTTATGGGCCTCAGCTGTCCCTCCGGTTGCCCCCCTCCCCCCT
TCAAGCCAAAAAACACAACAGCGTATATCATCCATCAAATGGCAAGAATT
CTTAGCACGAATCGTCGCCTGGTCTTTGTCTTCGGCGTTCTGGTCTTTTT
AATGTGCTTCGTCGCCAGTGGTATGGGCGAGAGTGCCCGGAGCGCCAGGA
AGGTGGCGGCTGCTTCGGAATTTGACGAAGAGGAGACCGAGGCCTTGAAG
GATTGGGAGGAGGATGGTGAATGGGACGAGGAAGAGGATGAGGATCAAGA
CTTGGAGGACGGCTTTGAGGATGAGGAGGAGGATGAATTCGAAGACGAGG
AAGACGGGTTCGAGGAGGAGGACGAAAGGGAAATGACGGACTATGAAGCT
GAAGAGGAAGATGACATCGACGATGAGGGCCCGGAGTGGGACGAGGCTTT
GGACCAGATCGAAGACGGAGACGGCCCCTCTCTGGACCTCGGGGACTTGG
AGGGCCTGATCGACAAGGAAGACCTCATGCGCAAGCTGGAGGAGATGGGA
CTTGACTTGGATGATGTCCATATCAGCGTCGATATGGGCGAAGATGCGAT
GGAAGAGGACGAGGAGGAAGAGCTGGAAGAGGAGGACGAAGATGAAGAGG
ATGAGGAGGATGAAGAGGAATACGAAAACTTTTAGATGTGCAATGGATCG
TATCATACTCGGATGCGTATTCGACTGACCTGGGAGCCGCGAAGTTTCAG
GATTATCATCACTTGTTTACTTATGGGCCTCAGCTGTCCCTCCGGTTGCC
CCCCTCCCCCCTTCAAGCCAAAAAACACAACAGCGTATATCATCCATCAA
ATGGCAAGAATTCTTAGCACGAATCGTCGCCTGGTCTTTGTCTTCGGCGT
TCTGGTCTTTTTAATGTGCTTCGTCGCCAGTGGTATGGGCGAGAGTGCCC
GGAGCGCCAGGAAGGTGGCGGCTGCTTCGGAATTTGACGAAGAGGAGACC
GAGGCCTTGAAGGATTGGGAGGAGGATGGTGAATGGGACGAGGAAGAGGA
TGAGGATCAAGACTTGGAGGACGGCTTTGAGGATGAGGAGGAGGATGAAT
TCGAAGACGAGGAAGACGGGTTCGAGGAGGAGGACGAAAGGGAAATGACG
GACTATGAAGCTGAAGAGGAAGATGACATCGACGATGAGGGCCCGGAGTG
GGACGAGGCTTTGGACCAGATCGAAGACGGAGACGGCCCCTCTCTGGACC
TCGGGGACTTGGAGGGCCTGATCGACAAGGAAGACCTCATGCGCAAGCTG
GAGGAGATGGGACTTGACTTGGAT
back to top
Synonyms
Publications