rna135, rna135 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna135
Unique Name	rna135
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1721
Alignment location	CM002455.1:353797..355880 +

Link to JBrowse

Properties


Property Name	Value
Product	udp-glucose pyrophosphorylase 2
Orig transcript id	gnl\|cribi\|Naga_100013g89.9767.mrna
Orig protein id	gnl\|cribi\|Naga_100013g89.9767
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:353797..355880 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g89	gene129	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna135	rna135-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30479.1	cds135	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:353797..355880+
coding sequence from alignment at CM002455.1:353797..355880+

mRNA sequence

>rna135 ID=rna135|Name=rna135|organism=Nannochloropsis gaditana|type=mRNA|length=1721bp
ACAGGCGCCACAAAAGCAATGAGAAGTTGTATATCTCCACTCATAGTGCT
CTTTGCAACGCTGCTTTGCAATGTCGACTCGTTCTTGGTTCCAGCTCCCA
CCATTGCATCCGCCTGCTCATCCCAACCTGCGATGGCGGCTGCTGCGAGC
ACAAGCAGCACGGAAACACAGGACCGTGCCGCCGTGGTGCCTCAGTTACT
AGAGTGGTGTAATAAGAATGGTATCAAAGATGCCAGTAAGATCACCATCG
GGCCCGTGAGCCAGGCGGGGATGGGTTTGGGGTTGGTGGCCACTGCCCCA
ATCAAGCAGGGGGAAACACTTGCCACTGTTCCTCTTAACTTGTGCTTCTC
CATGGACAGCGTTCGTGCCTCCCCCTTGGGCAAGGTAATAGGAGAATTTG
AGCCAGCTCTGGGAGACGCATCCCTGATAGCACTCCAACTCTTGTACGAA
GCGCACATGGGACCTAAATCCAAGTATGCTGTCTACATCAAAAGTCTTCC
CCGCCCCGGGCAGGATGGCTTTGATCATCCGCTTTTCTGGTCCACCGCCG
AGCAGGGCGTGCTCGCCAAGTCATCCACACGCAATCTTGGAGAGACCTTG
ATAGATGCCGTAGCCGAGGATTACGGATGGATTCAAAGCGCCCTTGCCCG
AGGGGGCATCTCAGGCCTTCAGGCTGACAGTTTTGACCTGAGCGATTTTG
AGTGGGCGGTGGCCGTGGTCCTCTCCCGCTCTTTTTTTGCCGAGAATGGT
TTACGTCTCGCCCCTCTTTTGGACATGGCAAACCGAGGAGAAGGCTGCAC
GAACGAACCACAGATTGGAGGGCTGGGGATTTTTGGAGGAAAAGGCCTTA
AAGTGATCGCGGACCGGGACACGGACAAGGGTCAGGAGATCGTCATTTCC
TACGGACCGAAAAGCGGGATCGAATTTCTAGAAGATCACGGCTTTGTACC
TCCGCCGTTGGAGGGGAACGCATTGGTCGGGGGGATGTGCTCACTCACCT
TTAAAATCTCGCCGGAGGGGGACAGGTTCTATGACGACAAGGAGGACGTG
ATGGGTACATTGGGGCTGCCCATGGCCTTCTCCTTCGACGTCCGGAGCGA
TGGCGACGTCGACCCGGAGATGCTCCAATTTTTAAGGTTTCTGAAGCTGG
GAGGAAAAGACGCGTTCCTGCTAGAGGCTGTATTCCGCAACGAGGTCTGG
CGATTCATGGAACTCCCGGTGAGCGAGGCGAATGAGCAAGCAGTGGACGA
GGTCATCATCGATGCCTGCACACAAGCCTTGGCCAATTTTGCGGAAGCAG
AGGTCTTGACAGACGAACTTATCCAAAAAGAGGGGGTGAGCCCATTGACG
ATTGCCAGGATGGAGGCCCTGGCACGGTTACGGGAGTCCGAGAAAGGGGC
TTTGGTGGCCACACAGGCCTGGGCGAATCGGGACCTGATGACGAGCGATT
TGAAGGTATACTACCAAGAAAGACGGCTGGAGGAGCTACAACTCTCGGGG
CCCCTGACCGATGATGAGTACGTGGACGGCTCGGGGGGCCGGCGGACGTC
GAACTTGGATTGGTAGAAAAGCGCGGCGGGCAGGAGGGGCGAATGACGAA
TGATGACTTGAAAGTGAATGAAACCTTTGAGTGATAGAAGCGTATCAAAG
CAGCCCACCGAGTATCTGCCTAACGATTCATTCCTTCAGGAGAATGGAAA
GGGAAAACCAAGGACGGCGTC

protein sequence of rna135

>rna135-protein ID=rna135-protein|Name=rna135|organism=Nannochloropsis gaditana|type=polypeptide|length=491bp
MHRAPLHKVEDKYLRGNISHSAEEAMREAIVTDNILPPPQRKNFMKLFGK
FLESRTRPSLDWTQVEQVPSEQLMDWEALPKCPDDQAVRHELLDKLVILK
LNGGLGTRMGCTLPKSAIEVRQDMTFLDMTVRQVEYLNSLYGVDVPLLLM
NSFKTDAVTSRLLNKYRQHNLTIHTFMQSCFPRIVKDTLQPLPQGPFAEE
NEADWYPPGHGDLFQSLFQSGLLDNLIEQGKEYMFISNVDNLGATVDLNL
LYFIADNDIEFCTGVVDLTRADQDGGVLTTYKGKRVVVELSQVPKQHLET
VAKKFTLFHTNNIWINLRALHALLVEEKLSIDLVTHERVVDRLKILQLET
TIGSVIKDFSNVLTMKVPRSRYLPVKSTSDLFLVQSSLYSVSRGMLIPNP
GRPYAKDKIPIIKLGEQFVHIQDYLERIPNGVPDLLALEHLTVAGDVVFG
ANVTLKGTVIIVANEGSVIMIPDKTVLEDKVVTGNLRILDH

mRNA from alignment at CM002455.1:353797..355880+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna135 ID=rna135|Name=rna135|organism=Nannochloropsis gaditana|type=mRNA|length=2084bp|location=Sequence derived from alignment at CM002455.1:353797..355880+ (Nannochloropsis gaditana)
GATCGCTCGCGGTAGGGCTCTGGAGGGTATCTTGCTATGGCGCTCGGGGC
TGCCTTTATGTTCATCGTGTAAGGTTAAAGGACCCGACTCTGGGAAATGG
GACGCTATGACTGCAATAAGTTACATGTTTGAGAGTTTGAAAGTTTTGGG
ATGATTTTTACGGGCTTTTTGAAGGGAGCTAGTGCACAAGCTCACTGGAA
AGGGTCGACTATTTCAAGTGTTCAAGAGTACCCACATTTTACATGACACA
GCCACATTCTCAACGAATGCTTGTTTCTCTCAGACCAAGAAATTACTGAT
AAGGACATTCTTGTAAAGAATTGCCGGCTGCTGTACGCTTTCGTATCTCA
TTCGCGTTCGTTGCCTTCTACGACACCTCCGACCCATTCTAAGCAACCAT
GCATCGGGCACCATTACATAAGGTCGAGGACAAATACCTGCGAGGCAATA
TAAGCCATTCTGCAGAAGAAGCTATGAGGGAAGCAATTGTAACTGATAAC
ATATTGCCACCGCCCCAGCGTAAAAATTTCATGAAGCTTTTCGGGAAGTT
TCTTGAGTCTCGTACCCGTCCGTCTCTAGACTGGACACAGGTTGAGCAAG
TGCCTTCCGAGCAGCTGATGGACTGGGAGGCGCTCCCTAAATGTCCAGAT
GATCAAGCAGTACGTCACGAGCTCTTGGACAAGCTGGTCATTCTCAAGCT
GAACGGAGGACTGGGTACGAGGATGGGATGCACGTTACCCAAGTCTGCCA
TCGAGGTCCGCCAGGACATGACCTTTCTTGACATGACAGTGCGGCAAGTG
GAATATCTGAATTCCTTATATGGGGTAGATGTCCCCTTGTTGCTCATGAA
TTCCTTCAAGACAGACGCAGTCACCTCGCGGCTGTTGAACAAATACCGTC
AGCACAACCTCACTATACACACATTCATGCAGTCATGTTTCCCGCGCATT
GTCAAAGATACTTTACAGCCTCTACCCCAAGGTCCTTTTGCAGAAGAAAA
TGAAGCGGACTGGTACCCGCCAGGGCATGGAGACCTCTTTCAGAGCCTCT
TCCAGTCCGGCTTGCTTGATAATCTAAtcgagcaggggaaggaataCATG
TTCATCAGTAACGTCGACAACTTGGGGGCGACTGTGGATTTGAATCTATT
GTACTTCATTGCAGATAATGACATTGAATTTTGCACTGGTGTGGTCGATC
TTACTAGAGCTGATCAGGACGGAGGGGTCCTTACTACATACAAAGGTAAA
CgtgtggtggtggagctGTCGCAGGTTCCAAAGCAGCATCTCGAAACCGT
GGCCAAAAAGTTCACTTTATTCCATACGAACAATATTTGGATCAATTTGC
GAGCATTGCACGCTTTGCTGGTAGAGGAGAAGCTTTCCATTGACCTGGTC
ACGCACGAGCGTGTCGTAGACCGTTTGAAGATCTTGCAGCTCGAGACGAC
AATTGGATCTGTCATTAAGGATTTTTCAAACGTCCTGACTATGAAAGTGC
CGCGGAGCCGATATCTTCCTGTCAAGTCCACCTCTGATCTCTTTTTGGTG
CAGTCCTCTCTATACTCCGTCTCGCGAGGGATGCTCATTCCTAATCCGGG
CCGGCCTTACGCCAAAGATAAGATCCCAATCATAAAGCTTGGGGAACAAT
TCGTCCATATACAGGACTACTTAGAGCGCATACCAAATGGGGTCCCCGAT
CTGCTTGCCTTAGAGCACTTGACGGTGGCAGGAGACGTGGTTTTTGGCGC
GAATGTGACGCTAAAGGGTACTGTCATTATAGTCGCAAACGAAGGGTCCG
TAATCATGATACCTGATAAAACGGTGCTAGAAGATAAGGTCGTTACTGGC
AATCTCCGCATATTGGACCACTAATTTTTTTTTGAATGAAAGAACGTAAT
AAAAGCATACCGATTGTAAACGAGGATAAAAACTGATCATGTGCATGCAA
CGGCAGGTCTCATTTGAACCCCAAAACTTTTTTTTCTTATCCCAGCGAAG
TATTGATAATCATTTCTCTCTGTTTTTTCGACATACTGCAGAGATCTCTA
TACATTGTTTTGTGTCTCCGACAAAATCATCTCA

Coding sequence (CDS) from alignment at CM002455.1:353797..355880+

>rna135 ID=rna135|Name=rna135|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at CM002455.1:353797..355880+ (Nannochloropsis gaditana)
ATGCATCGGGCACCATTACATAAGGTCGAGGACAAATACCTGCGAGGCAA
TATAAGCCATTCTGCAGAAGAAGCTATGAGGGAAGCAATTGTAACTGATA
ACATATTGCCACCGCCCCAGCGTAAAAATTTCATGAAGCTTTTCGGGAAG
TTTCTTGAGTCTCGTACCCGTCCGTCTCTAGACTGGACACAGGTTGAGCA
AGTGCCTTCCGAGCAGCTGATGGACTGGGAGGCGCTCCCTAAATGTCCAG
ATGATCAAGCAGTACGTCACGAGCTCTTGGACAAGCTGGTCATTCTCAAG
CTGAACGGAGGACTGGGTACGAGGATGGGATGCACGTTACCCAAGTCTGC
CATCGAGGTCCGCCAGGACATGACCTTTCTTGACATGACAGTGCGGCAAG
TGGAATATCTGAATTCCTTATATGGGGTAGATGTCCCCTTGTTGCTCATG
AATTCCTTCAAGACAGACGCAGTCACCTCGCGGCTGTTGAACAAATACCG
TCAGCACAACCTCACTATACACACATTCATGCAGTCATGTTTCCCGCGCA
TTGTCAAAGATACTTTACAGCCTCTACCCCAAGGTCCTTTTGCAGAAGAA
AATGAAGCGGACTGGTACCCGCCAGGGCATGGAGACCTCTTTCAGAGCCT
CTTCCAGTCCGGCTTGCTTGATAATCTAAtcgagcaggggaaggaataCA
TGTTCATCAGTAACGTCGACAACTTGGGGGCGACTGTGGATTTGAATCTA
TTGTACTTCATTGCAGATAATGACATTGAATTTTGCACTGGTGTGGTCGA
TCTTACTAGAGCTGATCAGGACGGAGGGGTCCTTACTACATACAAAGGTA
AACgtgtggtggtggagctGTCGCAGGTTCCAAAGCAGCATCTCGAAACC
GTGGCCAAAAAGTTCACTTTATTCCATACGAACAATATTTGGATCAATTT
GCGAGCATTGCACGCTTTGCTGGTAGAGGAGAAGCTTTCCATTGACCTGG
TCACGCACGAGCGTGTCGTAGACCGTTTGAAGATCTTGCAGCTCGAGACG
ACAATTGGATCTGTCATTAAGGATTTTTCAAACGTCCTGACTATGAAAGT
GCCGCGGAGCCGATATCTTCCTGTCAAGTCCACCTCTGATCTCTTTTTGG
TGCAGTCCTCTCTATACTCCGTCTCGCGAGGGATGCTCATTCCTAATCCG
GGCCGGCCTTACGCCAAAGATAAGATCCCAATCATAAAGCTTGGGGAACA
ATTCGTCCATATACAGGACTACTTAGAGCGCATACCAAATGGGGTCCCCG
ATCTGCTTGCCTTAGAGCACTTGACGGTGGCAGGAGACGTGGTTTTTGGC
GCGAATGTGACGCTAAAGGGTACTGTCATTATAGTCGCAAACGAAGGGTC
CGTAATCATGATACCTGATAAAACGGTGCTAGAAGATAAGGTCGTTACTG
GCAATCTCCGCATATTGGACCACTAA

Synonyms

Publications