rna1341, rna1341 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1341
Unique Name	rna1341
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3036
Alignment location	CM002457.1:392735..395663 +

Link to JBrowse

Properties


Property Name	Value
Product	glycosyl udp-glucuronosyltransferase
Orig transcript id	gnl\|cribi\|Naga_100205g3.2990.mrna
Orig protein id	gnl\|cribi\|Naga_100205g3.2990
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:392735..395663 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100205g3	gene1295	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1341	rna1341-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29338.1	cds1339	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:392735..395663+
coding sequence from alignment at CM002457.1:392735..395663+

mRNA sequence

>rna1341 ID=rna1341|Name=rna1341|organism=Nannochloropsis gaditana|type=mRNA|length=3036bp
ATGAAGCTCTCGGCGTGGCGGGCAAACCTACAACATTCGCAGCACAGGCA
ATCCTTACTCTTCTGCCTGATTGCGACATTGACGGGCGTCCTAGTGCAGG
CGTTTGTTCCCCATGGAAATACCGTCACGGCACCCATTTTTCCAGGACCT
CCTCCCAGTCCTCATCGCCCTAGCTGTAGACGTGCGAGGCCTCTATTTAT
GATCGACAATTTTTTCCGAATGCATGAGAAGAATCGACAATTGAACTGGG
ACGATTACTTTGGCAAGGCACGCTACGATCATCCCCATGCATTCGGCTCC
GCTGCGCAGGTTTTGACTGAGTCACTTTCTGTGCGGGAGGCTGTGGACGA
AAGCCTCCAGCAGGCTCTGTATCAACTCCCAGCGTGCGCTTCCATAGACC
TCGCCATTGTCGCTGTCCACTCGTCAGATACATCCGAGATCGATGCAGTT
CTCACGCACCTGGCGCAGGCCTTACCGGGCCACACGCGTGTACTTGGGTG
GGCCGGTCAATCACTGGGAGAGGCCGTAAGGCCTGCATTCGAGGGTCTTG
GCGCCCGCCTGGTCGGAGAGGATGGCCTGCCCTTCATCAGCGTGACGTTG
GCGTCCATTCCCTCTGTCGCAGGCCGCGGCTTCTACATCGGCGAGGAAGA
GTTGCGTTTGTGGAAAGCGCAGGGTGCGGCGGAGGCGAGCGGCCAGGAGG
TTCCCGTAGGAGGCCAGGACCAGGGCGGCACCGACGAGGAAAATGTAGGA
GAAGTCTCCTCCGCGGCTGCTGCCAACAGTTTTCTGGGCCCAGACAAGAA
GTGGGAGCAACGTGTGGGGGTGACGGTGAACGAGGCGTATAAAGACCCGC
CGGTCATTTTGCTCCTCGGGAGCCTGGAGGACGCCTCCCTCGCCCAAGCT
GCCTTGCAAGGCCTGGACCGGACCTACCCCGGCACCGCCCGCATTGGTGG
ATTGTCCGACGGCGTTGTCTTGTTCAGTCGCGAAGGCGGGCCCGGGTCCC
CTCAGGGCGCACGGATCTTCCAAGAAGAAGGGAACGGGCTGTTGGGCCTG
GCCCTGCTCGGTGACATCCGCGCCTTAACCTTCGTCAATCAAAGGGTAAA
GCGCGTGCCCAACACATCCACGTACCGGGTCGAGTCTGTGAGCGAAGACG
GGAAGACGATCATGGAAGTGTCGACTCCCGGAGGCGTCCGGCAGACTCCT
GTGGAAGCGGGTTTGCAGGCGGTGCTGGAAGGGGAAGAGGCCAGGGCGTT
GGGTCTGGGCGATGTGGACGAGGAGGCGGACATGTCGGCAGCTGAGAGTC
CGGGCGGCGCTCGACAGGGTGCAGACCGCTGGAGTTTGGTGAGTGTGCGT
GGCAGTCAGGAGCCAGCGGCCATGCTGCCGGCGGGATGGGTATTTGGCAG
CGATGGTAGCTTGAGGCTGGCAGGTCGCGTCGCCCGGAAAGGACAATTCT
TGAGCATCTATGTGCAAGACACGGGCAGCACGCATGAAGGAGAGATGGGC
CTGGTGGGGGCGTTGCGGAGAGAGGTGGACGACGAATGGGGCAAGGCGGA
GTTGGGCGTGACGAAATTCCGGCCCGCGGGTGTGCTCCTCGCCAAAGACG
CGGCCTACCCCAGCCAGGGGATCGGCCAGGACTTCGGAGAGGCGCTTGGT
GATACCCTGGCGGGTACTCCCATAGCCGGACTTGTCATGGATACGGCCCA
ATTCGCCCCTCTGGTGATGACGAGAAGCTCGGCGCTTTACCATGAGTCTT
TGGTGGTGCATGTGTTGGCTTGCAAGGCCAAGCGCCGGGACCTGCGGGAG
ATCCGCTTTCGCGACCGGGGTCTCCCTGGCGCAGGAGCCTCGAACACGAA
GCCCAGTCCGTTGGACATGCCCTTTGACCCGCAGCGACCGGTGATGGATG
AGGCGACGGGAGAGGTGGCCGTAAACCGACAGGCGGCCCTGATTGGGACC
GACGTCCGCGTCGACAACATGGCTTGGAACGTGAGGGAGGAAAGCGTCTA
CCCCCGAAGCTTGTTCGAAAGTATGGTGTGGACCAAGGAGCGGGAGCTTT
ACTTCGTCCGGGAGGACGCCCCTCTCATGAACTTGATGCGGACCGTGATG
ATGATGATCAAGAACCCAGACGCCGCCGTGCAGGCCAAGGCGCGGGGGTT
GGACGTGACCGAGGCCCTCAAAGCACAAACGGTGGAGGGAGACAAGTGGG
CGGTCCTGGGGGACATCTCGCGGGGCACGCCTTTCCATGGAGTCCTGGCT
CCCTTGTACGACCCAGAGCAAGCGGCGCGGGCCACCATTGCAGGAGGCCA
AGCGGGGGCCGTGGCCGTCCGGGTGGATCAGACCTATTACGGAGGGAAGT
ACCAGCACGTGCGAGAGGTAAAAGATGCCCTTCGAGAGGCCCGGGTGCCT
GTCGTGGCGGATGATTTAGTCCTATATCCGTACCAACTCTATCTGGCCAA
GCTGTTTGGGGCGGACGGGGTCAAAATGGGCCAACTAAGCATCCTTTCGG
ACGAGGACTTGCAGTACCAGGTCAAAATATGTCAGACCCTAAGCCTTACC
CCCATCATCTCCGTCGCCTCCCTCTCCCAGCTCCGTCGTGCGGCGGCGCT
GCCCCTGAATCAAACGTCGGTCCTAACGATTGATGACCGCAACTGGGCCA
CCATGGGCAGCAACTCAGGATCGAAGCATCGGGCGGTAGAATGGCTTCAA
GACCCCGTCGTGCAGGCAAGTTTACAAGCGCGGCGGGAGGGGGCAGGGGC
TGGCGGTGCACCCTTGATCCTCGTGGAAGGTCGAAGCAATCTGAGCGATG
CGGAAAAGGAGGAGCTGAAAAGGCTGGGCGTGGGTGGCGAGGTATTCGCC
TTCGCAGACCTACCGAGCAGCGTTCGAGTCGAGGCAGGCAGGGAAAAAAA
TGGAATGGGGAGTCAAAATGGAGGCCCTTCTGGCCTGGGGATGGGTGGAA
CAAGCATGGGGGGGGGCAAAAGCATAGAGAGCCTGAAGGAGCTTCTTCGC
GCACAGGCTGCAGCGTCATCGTCGACGCCTCCATAG

protein sequence of rna1341

>rna1341-protein ID=rna1341-protein|Name=rna1341|organism=Nannochloropsis gaditana|type=polypeptide|length=808bp
MELVKDAANAVPPLRRVTAHILRGRNATSKYFRLWILSTMLVLHLLPGLM
TVVTADDGLEAQDTARASCDSDMTSSRKRSSRGISVGGSRFLSRKRGTAG
KHVLMVSINELSHIKPLTALARELLQRGHHITFVAPESCLLNTAFTSTDK
LATEAPCQIDTKGWMSKYLPKATFVSAGAALTSAEKEAATPRDLRRAVLY
ALHTVSDVNEALLTRLLRTFSPASNSSGGMHGGEDEGQVARLPAPDMMVA
DFLTTAAVDAAEALGVPLIANNPFPICHDLTEPQGILVPVHAFPAPLRSL
TTFKGRIANLINHFLWLGVGLYAARLRNLTRSKHGLPALPCLEQMAFRGS
ALEARAWILQNTVFGLEIPRVVDPRTHMLGPLLLPFGGEACTPGKAERDC
RAALKWLGKGRSERPVLYVGLAEALTPAPMPVTLAAMKALASDQIGQHYD
VLWVLDEESRLRLDRPVPVHMLVVTAVNQRAVLSHPRAALVLAQPALGLI
SEVLWHGLPVLGLPLRSYDRGACTLAQDAGAAMCLPPSGPGGWPEAENLV
RAIWELAPPPRPPVAPSALDPSFSFPGRPSNFRAQARRLAIIMHASGGVA
RAADLVELGMRVGLAHLQRPSLDIGFGMGSSWLGGSMVDVRLVLFLILLL
CYWTLALSYRLGRRLHKWWSVVGRKAQGVRGVSESDRAQSVLQQHQYTQS
SLHNGGRAMATSAPPPFGSLSPAASSQAPLSPAPPALAASSSTPNMMMPG
GSGGEKVTRRGGDATSSPSSERNMSGRSGGGRGGGEGGGGAGNAPRDRPP
LPPRMTNF

mRNA from alignment at CM002457.1:392735..395663+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1341 ID=rna1341|Name=rna1341|organism=Nannochloropsis gaditana|type=mRNA|length=2929bp|location=Sequence derived from alignment at CM002457.1:392735..395663+ (Nannochloropsis gaditana)
GCTTTTGACAGGGGGAGAATACACGCGTCGCCACGGAAAAGTCTGAGAAG
CATTAGGTTTCTCAAGGTTATTGCGCGGCGAGCAAAGCATGGAGCTGGTA
AAGGACGCAGCAAACGCGGTTCCCCCCCTAAGACGAGTTACCGCGCATAT
TTTACGGGGACGCAATGCCACCTCCAAATACTTCCGTTTGTGGATTCTAT
CTACAATGCTCGTCCTACATCTGTTGCCAGGACTCATGACTGTCGTTACG
GCTGACGATGGCTTGGAAGCTCAGGACACGGCGCGAGCATCTTGCGATTC
GGACATGACTAGTAGCAGGAAGcgcagcagccgcggcaTTAGTGTCGGTG
GCAGCCGCTTTTTGAGCAGGAAACGAGGCACGGCCGGCAAGCATGTACTT
ATGGTCTCGATCAATGAATTGAGCCACATTAAACCTTTGACCGCCCTGGC
ACGTGAATTGCTGCAGAGAGGGCACCACATCACATTCGTCGCACCTGAGT
CGTGCTTACTCAACActgccttcacctccaccgaCAAGCTCGCAACGGAA
GCACCTTGCCAAATCGATACGAAGGGGTGGATGTCAAAATATTTGCCAAA
AGCGACCTTTGTGAGCGCTGGCGCCGCCTTGACGTCggcggaaaaggaag
cagCCACCCCCCGAGACTTGAGGCGGGCGGTCCTCTACGCCCTGCACACG
GTGTCCGACGTGAATGAGGCGTTGCTCACGCGGCTTCTCCGCACCTTCAG
TCCAGCCTCCAACTCTTCCGGCGGCATGCATGGtggagaggacgaaggcC
AGGTGGCGCGGCTCCCGGCGCCGGACATGATGGTGGCGGATTTCCTTACC
ACCGCCGCAGTGGACGCAGCCGAGGCCCTGGGCGTCCCTCTGATCGCCAA
CAATCCTTTCCCCATATGCCACGACCTAACGGAGCCACAAGGCATCCTGG
TGCCCGTGCACGCCTTCCCAGCCCCTCTCCGGAGTCTGACCACGTTCAAA
GGCCGCATCGCCAACCTGATCAACCACTTCCTGTGGCTCGGGGTGGGGCT
CTACGCTGCCCGGCTTCGGAATCTGACCCGCTCTAAGCACGGCCTCCCCG
CGCTCCCCTGTCTGGAGCAAATGGCGTTTCGAGGCAGCGCCTTGGAAGCC
CGGGCCTGGATATTGCAGAACACGGTCTTCGGGTTGGAGATCCCCCGGGT
GGTGGACCCGCGCACCCACATGCTCgggccgctgctgctgccctTCGGGG
GCGAGGCCTGCACTCCGGGCAAGGCCGAGAGAGACTGCCGCGCGGCGCTC
AAGTGgctgggcaaggggaggTCGGAGCGGCCCGTCCTGTACGTGGGCCT
TGCCGAGGCCCTGACCCCGGCGCCCATGCCAGTGACCCTGGCCGCCATGA
AAGCCCTGGCATCGGACCAAATCGGGCAGCACTACGACGTGCTCTGggtc
ctggacgaggagagccGCCTCCGCTTGGACCGACCGGTCCCGGTCCACAT
GCTGGTGGTCACTGCCGTGAACCAGCGAGCCGTCTTGAGCCACCCACGGG
CCGCCCTTGTCCTGGCCCAACCCGCCCTGGGCCTCATCTCCGAGGTCCTC
TGGCACGGCCTGCCCGTCCTGGGGCTCCCGCTCCGAAGCTACGACCGCGG
CGCCTGCACTCTGGCCCAGGACGCCGGGGCGGCCatgtgcctccctccct
cgggccctGGCGGGTGGCCGGAGGCTGAGAACTTGGTGCGGGCCATCTGG
GAGctggcacctcccccccgccctcctgttgccccttccgccctcgaccc
ttccttttccttcccgggAAGGCCAAGCAACTTCAGGGCCCAGGCCCGCC
GACTGGCGATCATCATGCACGCCTCGGGCGgggtggcgcgggcggccGAC
CTGGTGGAACTTGGCATGCGTGTGGGTCTCGCGCACTTGCAACGCCCGAG
CCTGGACATTGGGTTTGGGATGGGAAGCTCCTGGTTGGGGGGTTCGATGG
TGGACGTCCGCCTGGTCCTCTTCCTGATCCTTTTGCTCTGTTACTGGACC
CTGGCCCTCAGCTACCGGTTGGGGAGACGGCTGCACAAGTGGTGGAGcgt
ggtgggaaggaaggcccAAGGCGTGCGCGGGGTTTCGGAGAGCGACAGAG
CCCAGTCCGTGTTGCAGCAACACCAGTACACGCAGAGCAGCCTGCACAAT
GGCGGGCGGGCGATGGCTACCTCGGCTCCGCCCCCCTTTGGGTCGCTCTC
CCCCGCAGCCTCCTCACAGGCGCCCCTCTCGCCCGCGCCCCCGGCCCTTG
CTGCGAGCAGCTCCACGCCCAACATGATGATGCCGGGAGGGTcgggggga
gaaaaggtgacccggcgggggggggatgcaacctcctctccctccagcgA
ACGGAACATGAGCGGAAGGagtggcggagggcgtggaggaggagagggag
gaggaggggcagggaatgCGCCGAGGGACCGACCGCCGTTGCCCCCGCGG
ATGACCAATTTTTGAGGAACGGGTGCGAGTGATGGAGCTTGTATTTTAGT
CTGTGAGTACCTTGTCGTTGTCCCTCCCAACTGCAAGGCTCGAGaaagca
ggaggcagggggaaagcgtgACGGTGAGGCTGAGTGCTGGGAGCCAAGCA
CGGCGTGTGGACGCCTTCGAGAAAGTGAGAGTCGCCGTCTTCTAGAACCG
CAGGAGGCCTCTGCTGACGGAGTAAAATTTTGGGCCGTGGCAAGTGTGAG
CAATAGCATGCATAAAAATCAAAACAAACGTGCGCATGCACCCCTCTTCG
ACGTGGAGATAGTCATACTCTAGACTACTTGttgcttctctcccttcctt
acGCCCCACACCCTATCGGGCGcggcccttcttcctgttcccTCAGTGGC
CCCTTCCGCAGCCTCGCGCTCGTtccacc

Coding sequence (CDS) from alignment at CM002457.1:392735..395663+

>rna1341 ID=rna1341|Name=rna1341|organism=Nannochloropsis gaditana|type=CDS|length=2427bp|location=Sequence derived from alignment at CM002457.1:392735..395663+ (Nannochloropsis gaditana)
ATGGAGCTGGTAAAGGACGCAGCAAACGCGGTTCCCCCCCTAAGACGAGT
TACCGCGCATATTTTACGGGGACGCAATGCCACCTCCAAATACTTCCGTT
TGTGGATTCTATCTACAATGCTCGTCCTACATCTGTTGCCAGGACTCATG
ACTGTCGTTACGGCTGACGATGGCTTGGAAGCTCAGGACACGGCGCGAGC
ATCTTGCGATTCGGACATGACTAGTAGCAGGAAGcgcagcagccgcggca
TTAGTGTCGGTGGCAGCCGCTTTTTGAGCAGGAAACGAGGCACGGCCGGC
AAGCATGTACTTATGGTCTCGATCAATGAATTGAGCCACATTAAACCTTT
GACCGCCCTGGCACGTGAATTGCTGCAGAGAGGGCACCACATCACATTCG
TCGCACCTGAGTCGTGCTTACTCAACActgccttcacctccaccgaCAAG
CTCGCAACGGAAGCACCTTGCCAAATCGATACGAAGGGGTGGATGTCAAA
ATATTTGCCAAAAGCGACCTTTGTGAGCGCTGGCGCCGCCTTGACGTCgg
cggaaaaggaagcagCCACCCCCCGAGACTTGAGGCGGGCGGTCCTCTAC
GCCCTGCACACGGTGTCCGACGTGAATGAGGCGTTGCTCACGCGGCTTCT
CCGCACCTTCAGTCCAGCCTCCAACTCTTCCGGCGGCATGCATGGtggag
aggacgaaggcCAGGTGGCGCGGCTCCCGGCGCCGGACATGATGGTGGCG
GATTTCCTTACCACCGCCGCAGTGGACGCAGCCGAGGCCCTGGGCGTCCC
TCTGATCGCCAACAATCCTTTCCCCATATGCCACGACCTAACGGAGCCAC
AAGGCATCCTGGTGCCCGTGCACGCCTTCCCAGCCCCTCTCCGGAGTCTG
ACCACGTTCAAAGGCCGCATCGCCAACCTGATCAACCACTTCCTGTGGCT
CGGGGTGGGGCTCTACGCTGCCCGGCTTCGGAATCTGACCCGCTCTAAGC
ACGGCCTCCCCGCGCTCCCCTGTCTGGAGCAAATGGCGTTTCGAGGCAGC
GCCTTGGAAGCCCGGGCCTGGATATTGCAGAACACGGTCTTCGGGTTGGA
GATCCCCCGGGTGGTGGACCCGCGCACCCACATGCTCgggccgctgctgc
tgccctTCGGGGGCGAGGCCTGCACTCCGGGCAAGGCCGAGAGAGACTGC
CGCGCGGCGCTCAAGTGgctgggcaaggggaggTCGGAGCGGCCCGTCCT
GTACGTGGGCCTTGCCGAGGCCCTGACCCCGGCGCCCATGCCAGTGACCC
TGGCCGCCATGAAAGCCCTGGCATCGGACCAAATCGGGCAGCACTACGAC
GTGCTCTGggtcctggacgaggagagccGCCTCCGCTTGGACCGACCGGT
CCCGGTCCACATGCTGGTGGTCACTGCCGTGAACCAGCGAGCCGTCTTGA
GCCACCCACGGGCCGCCCTTGTCCTGGCCCAACCCGCCCTGGGCCTCATC
TCCGAGGTCCTCTGGCACGGCCTGCCCGTCCTGGGGCTCCCGCTCCGAAG
CTACGACCGCGGCGCCTGCACTCTGGCCCAGGACGCCGGGGCGGCCatgt
gcctccctccctcgggccctGGCGGGTGGCCGGAGGCTGAGAACTTGGTG
CGGGCCATCTGGGAGctggcacctcccccccgccctcctgttgccccttc
cgccctcgacccttccttttccttcccgggAAGGCCAAGCAACTTCAGGG
CCCAGGCCCGCCGACTGGCGATCATCATGCACGCCTCGGGCGgggtggcg
cgggcggccGACCTGGTGGAACTTGGCATGCGTGTGGGTCTCGCGCACTT
GCAACGCCCGAGCCTGGACATTGGGTTTGGGATGGGAAGCTCCTGGTTGG
GGGGTTCGATGGTGGACGTCCGCCTGGTCCTCTTCCTGATCCTTTTGCTC
TGTTACTGGACCCTGGCCCTCAGCTACCGGTTGGGGAGACGGCTGCACAA
GTGGTGGAGcgtggtgggaaggaaggcccAAGGCGTGCGCGGGGTTTCGG
AGAGCGACAGAGCCCAGTCCGTGTTGCAGCAACACCAGTACACGCAGAGC
AGCCTGCACAATGGCGGGCGGGCGATGGCTACCTCGGCTCCGCCCCCCTT
TGGGTCGCTCTCCCCCGCAGCCTCCTCACAGGCGCCCCTCTCGCCCGCGC
CCCCGGCCCTTGCTGCGAGCAGCTCCACGCCCAACATGATGATGCCGGGA
GGGTcggggggagaaaaggtgacccggcgggggggggatgcaacctcctc
tccctccagcgAACGGAACATGAGCGGAAGGagtggcggagggcgtggag
gaggagagggaggaggaggggcagggaatgCGCCGAGGGACCGACCGCCG
TTGCCCCCGCGGATGACCAATTTTTGA

Synonyms

Publications