rna1323, rna1323 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1323
Unique Name	rna1323
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2183
Alignment location	CM002457.1:331974..333753 -

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Properties


Property Name	Value
Product	diacylglycerol acyltransferase family protein
Orig transcript id	gnl\|cribi\|Naga_100028g44.3308.mrna
Orig protein id	gnl\|cribi\|Naga_100028g44.3308
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:331974..333753 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100028g44	gene1277	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1323	rna1323-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29372.1	cds1321	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:331974..333753-
coding sequence from alignment at CM002457.1:331974..333753-

mRNA sequence

>rna1323 ID=rna1323|Name=rna1323|organism=Nannochloropsis gaditana|type=mRNA|length=2183bp
AGCTGACAGGAGTATCGTACTGGTGCATGTTAAGTCGCCGCCGCGGGGGG
GGAGGGGTGCTGGGACGGCAATGCTGTCCTCAACTGGCCAGGGAACCGTG
CTTTACTTTACGAAACCACGGGACATGATACGAGACCATGGACACGCACT
AGAGCGCCCGTAAATTTTGTCGACAAGTCACATAGTGGTACAATTAACAT
CTTGCTCGTTCTTATCACCTCCTCACCCCCCCTAGGACCCTGGAGGAGTA
CACCCCTCCATCCACAAGCCAACACGCCAGTCCGACTATTGATCGTATTG
TAATGACGGTATCGGCAGAATTTCAAGCAGATATCTTACTGGACAAGACG
GCAGATGCCGGATCTCCGTCGCGCAAGCGCAGGAAAAAAAGCGACGTAGA
CTCATCGCCACTCTCACAGAGTTCATCCGATGTACCATCCAACGCTGAAG
CAGTGACTGCACTCAACGATTGCTTGCTGGATCTATCCCACATTGCGAAA
CTAAAGCAGAGCTATCCATCAGCCCCGGGTTATCCGCATTGTGTCGTGAA
AGACGTGCTAGAGGCAAAGTATTTTCGTGAGCTCCGCGAGGAGATGGTTA
CCTCCCTGGCGGCTACCTTCAAAGAGACCGACTTGTTCAAATTGTACCAG
ACAGGGGACCTTGCCAATCTAGACGGGAGTGATCCAGAAGTAAGACGCAA
GATGCCTCGATTGCTAGCCCTGCGTGATGCAATTTATTCCCCGAAATTTC
GCGCCTTTGTGCGGGAGATTACTGGGTGCCGACCCTTGACCGACCGCACC
GATTGCTCCTCCAATCTGTACACGCAAGGCTGCCACTTGCTCTGCCACGA
TGACGTGATTGGGACGCGTTGTATCTCCTTCATCATTTATCTCACGGACC
CGGATGAGACCTGGGGAGCAGAGGACGGAGGAGCCTTGGAGATCTACCCC
CTCTCTGGAGATTCCCTGGGCGTCCCGAAGGCGGTGCCTCTTCAAAACCA
TCCGCCCAAACCCAACACCATGGCATTTTTCACTGTCCTTCCTGGACAGA
GTTTCCACGCAGTGGAGGAGGTGTACAGCGAGAAGATGCGTTTGAGCATT
TCCGGCTGGTACCATGCCGACGACCCCCCCATGGGCGCCGAGGCGTTGGC
CTCCCTTAACCAGCTGCAGATGCGACAAGACGAGACCCCGCAAGCATTCT
CACCCCTTCGACTGGCACGTGCCTTGCACCGCACCGCGTCGGGGCCCGGT
TCTGTAAACCCCCTCTTGGCAAGGTGGGTCAATCCGACCTACCTGACGCC
GGGTGCCATCGAGCAGATCGCCGCACGTTTTCAGGCTGACAAGAGCATAC
TGCTGCATGAATTCTTGTTGCCCTGTGTGGCCATGCAAGCTGCACGCTTG
TTGCGGTCGCAGGACCAGGCAGACAGGGTGGGCGGGGGGCAGAAGCCAAC
CTCCGAGGTTGGTCTGGCGATGATGCCGTGGGAGCTGATAGGCCCTCCCC
ACAAACAGCGTTACCTGCGCTTGGGGGCCACTGGTCTTTCAAGCGACCCT
GTGGAAAAAGCAAAGACGGCCACGGATTTGATGGCGGCTTTGCGTGGCCT
CTTTGGCTCGGAAGCCTTTGCCCGGTACCTCGCCCGCTTGACGGGTTCAA
TTCCAAGCGGGGTCAGGACGGAAGCCCGGCGTTTCCGTCCCGGCCTTGAC
TACACTCTGGCGCATTACGGTATTCTCACCAAGGACCCTCGGTTGGACGC
GACCCTTGCCTTCGTGGATGACGGCAACAAGGCGAAAAAGGAACTGTGGG
AATCGGGGGACGTGGGCGGTTTCGGCTGTTACATCAAGGCGGAGGTCGGG
AATGATGGTGCCGAGGCCGCTGAGAGCTACCGACGACAGGCGCATGGGGA
GGAGGATGATCAGGTCTTGAATGTATCCGCGGCGCACAACGCGTTGAGCC
TGGTGCTGAGGGAGACCCAGGCGATGCGTTTTGTGAAATACGTGAGCGCC
GCAGCGCCGGGAAGTCGTTGGGACGTGGTGTCAGAGTATTGTTTGGATGG
AGAGGAGAGGGTGTCAGACAGATGAGTATCGTTTCAATACAAATGAAAAC
AAGTTTTGATATATTACTTGGCCCGAATGCACGTGAATTCTGCAACTCAA
ATTCAAGCTCTACGCTTTTGATGCCGCGAATGC

protein sequence of rna1323

>rna1323-protein ID=rna1323-protein|Name=rna1323|organism=Nannochloropsis gaditana|type=polypeptide|length=403bp
MRRPAHDTGAMKERPLSTRIPETSSPLSERTLVRHGLGASPALKTSPVDQ
RQAYTVGYSTPKSYTKEVPPEFFQRVCDADDLWTRTQGAIALLMLWVVWL
AGSFCAFWWPYLVFKGYHKAAIATALIMAYPYVVKVKQSPAFIRFILSGA
GWFKGGTCLYLEESMKNVETSQSILLCQHPHGLFTYGFIQNGSAARIDAR
RPEIYVPTAFRHMKPNAVALVEPLLFKIPLIRHFITAFGCARPATKHEML
YLMSKKKPLGLLPGGSEEIILSHHGHERVYIKHRKGFIKYALQHGYTICI
GYTFGEADSYRTLDWAVKFRLWYLRRFRVPLFACWGIWWCPLLPRGQVAL
ETVVGNPFQLPKLADPSKEDIDKWHGRYVELLVDLFERNKAKFGYGERVL
EIY

mRNA from alignment at CM002457.1:331974..333753-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1323 ID=rna1323|Name=rna1323|organism=Nannochloropsis gaditana|type=mRNA|length=1780bp|location=Sequence derived from alignment at CM002457.1:331974..333753- (Nannochloropsis gaditana)
GGTGAGATCATTGCATGTTGGTGTCCATTTTTCGTTCATGCGACGCCCCG
CACATGATACAGGTGCCATGAAGGAACGTCCACTGTCGACGCGGATCCCG
GAAACCTCGTCTCCGCTCTCAGAGCGAACACTTGTGCGACATGGTCTTGG
TGCGTCACCCGCATTGAAAACAAGCCCGGTGGACCAACGCCAGGCTTACA
CCGTGGGTTACTCCACGCCGAAATCCTACACTAAGGAAGTTCCACCGGAG
TTTTTCCAACGTGTATGCGACGCGGACGACCTGTGGACGCGTACACAGGG
TGCCATAGCCTTGCTTATGCTTTGGGTGGTGTGGCTTGCTGGTTCCTTCT
GTGCCTTCTGGTGGCCTTATCTGGTCTTCAAAGGGTATCACAAAGCTGCC
ATAGCGACGGCATTAATTATGGCATATCCATACGTGGTGAAAGTCAAGCA
ATCACCAGCTTTCATACGCTTTATATTGTCGGGTGCTGGTTGGTTCAAGG
GTGGCACTTGCCTTTACCTCGAGGAGTCGATGAAAAATGTCGAAACAAGC
CAGGTGCGTGTAAGAATGCGTCGTGAAGATATCTGCGATTCCTCTTCATA
TTTGGGGTCACACTTTGAAGAATAAAGGAAATCGAAGGCAGCATCTGGCC
TTTGGCTGCTGGAGGAGGTCTCTATTTTGCAAGCTTCCGTGCTCACACTC
GTCATTGTCCTTTCCCCTCAAAACCACGCCAGTCCATCCTCCTTTGCCAG
CACCCGCACGGTCTCTTCACATACGGATTCATCCAAAACGGCTCTGCGGC
TCGGATCGACGCCCGCCGCCCGGAAATTTACGTCCCCACGGCCTTCCGGC
ACATGAAACCGAACGCGGTGGCCTTGGTGGAGCCCCTTCTTTTTAAAATC
CCACTCATTCGACATTTCATCACCGCCTTTGGCTGTGCACGGCCCGCAAC
AAAGCATGAAATGCTGTACCTAATGTCTAAAAAAAAGCCTTTGGGGCTGT
TGCCGGGCGGCTCGGAAGAGATCATCCTCAGTCACCACGGGCACGAACGC
GTCTACATAAAGCACCGCAAAGGCTTCATAAAATATGCCTTGCAACATGG
TTACACCATTTGCATCGGCTATACGTTTGGTGAGGCGGATTCCTACCGGA
CGTTGGACTGGGCGGTTAAGTTTCGACTCTGGTATCTGCGCCGGTTTCGT
GTCCCACTTTTTGCGTGTTGGGGGATCTGGTGGTGTCCGTTGCTGCCGCG
GGGGCAGGTAGCTTTGGAAACGGTGGTGGGCAACCCCTTTCAACTTCCCA
AGCTCGCAGATCCCAGCAAGGAGGACATCGACAAGTGGCATGGGCGATAC
GTGGAGTTGCTCGTCGACCTTTTCGAGCGGAATAAGGCCAAATTTGGGTA
CGGCGAGAGGGTGCTGGAGATCTACTAGAGGATGAAATTGCCAAGGTGTG
CATATGTGTAGTCCGGGAAGTGGTGGGTACGTAGACAAATGAGAAAACGG
AATGTGTGTGGTATGCACACCTAACGTCGAGGCTCTTCATGGTACAAAGG
GAGGACTAGGCGATACTCGGCATGCATGTGTCAAGATGGATCTATGCGTG
TGAAGGTGCTGATACTCAATGATACAGGCCCCTCGAAAGAAGGGCCTGCA
CTTCGAGGTGCAAATTGGGATCGAATACATATGCGCGAGTTTGTTCATGC
ATTTGGGTGCGGTCTCTTGGTAGTAAAGGCATGCAAATTTCATCAAAGTA
ATACACAAAATCCATTCAGTTCAGATCGAG

Coding sequence (CDS) from alignment at CM002457.1:331974..333753-

>rna1323 ID=rna1323|Name=rna1323|organism=Nannochloropsis gaditana|type=CDS|length=2424bp|location=Sequence derived from alignment at CM002457.1:331974..333753- (Nannochloropsis gaditana)
TCCATCCTCCTTTGCCAGCACCCGCACGGTCTCTTCACATACGGATTCAT
CCAAAACGGCTCTGCGGCTCGGATCGACGCCCGCCGCCCGGAAATTTACG
TCCCCACGGCCTTCCGGCACATGAAACCGAACGCGGTGGCCTTGGTGGAG
CCCCTTCTTTTTAAAATCCCACTCATTCGACATTTCATCACCGCCTTTGG
CTGTGCACGGCCCGCAACAAAGCATGAAATGCTGTACCTAATGTCTAAAA
AAAAGCCTTTGGGGCTGTTGCCGGGCGGCTCGGAAGAGATCATCCTCAGT
CACCACGGGCACGAACGCGTCTACATAAAGCACCGCAAAGGCTTCATAAA
ATATGCCTTGCAACATGGTTACACCATTTGCATCGGCTATACGTTTGGTG
AGGCGGATTCCTACCGGACGTTGGACTGGGCGGTTAAGTTTCGACTCTGG
TATCTGCGCCGGTTTCGTGTCCCACTTTTTGCGTGTTGGGGGATCTGGTG
GTGTCCGTTGCTGCCGCGGGGGCAGGTAGCTTTGGAAACGGTGGTGGGCA
ACCCCTTTCAACTTCCCAAGCTCGCAGATCCCAGCAAGGAGGACATCGAC
AAGTGGCATGGGCGATACGTGGAGTTGCTCGTCGACCTTTTCGAGCGGAA
TAAGGCCAAATTTGGGTACGGCGAGAGGGTGCTGGAGATCTACTAGATGC
GACGCCCCGCACATGATACAGGTGCCATGAAGGAACGTCCACTGTCGACG
CGGATCCCGGAAACCTCGTCTCCGCTCTCAGAGCGAACACTTGTGCGACA
TGGTCTTGGTGCGTCACCCGCATTGAAAACAAGCCCGGTGGACCAACGCC
AGGCTTACACCGTGGGTTACTCCACGCCGAAATCCTACACTAAGGAAGTT
CCACCGGAGTTTTTCCAACGTGTATGCGACGCGGACGACCTGTGGACGCG
TACACAGGGTGCCATAGCCTTGCTTATGCTTTGGGTGGTGTGGCTTGCTG
GTTCCTTCTGTGCCTTCTGGTGGCCTTATCTGGTCTTCAAAGGGTATCAC
AAAGCTGCCATAGCGACGGCATTAATTATGGCATATCCATACGTGGTGAA
AGTCAAGCAATCACCAGCTTTCATACGCTTTATATTGTCGGGTGCTGGTT
GGTTCAAGGGTGGCACTTGCCTTTACCTCGAGGAGTCGATGAAAAATGTC
GAAACAAGCCAGTCCATCCTCCTTTGCCAGCACCCGCACGGTCTCTTCAC
ATACGGATTCATCCAAAACGGCTCTGCGGCTCGGATCGACGCCCGCCGCC
CGGAAATTTACGTCCCCACGGCCTTCCGGCACATGAAACCGAACGCGGTG
GCCTTGGTGGAGCCCCTTCTTTTTAAAATCCCACTCATTCGACATTTCAT
CACCGCCTTTGGCTGTGCACGGCCCGCAACAAAGCATGAAATGCTGTACC
TAATGTCTAAAAAAAAGCCTTTGGGGCTGTTGCCGGGCGGCTCGGAAGAG
ATCATCCTCAGTCACCACGGGCACGAACGCGTCTACATAAAGCACCGCAA
AGGCTTCATAAAATATGCCTTGCAACATGGTTACACCATTTGCATCGGCT
ATACGTTTGGTGAGGCGGATTCCTACCGGACGTTGGACTGGGCGGTTAAG
TTTCGACTCTGGTATCTGCGCCGGTTTCGTGTCCCACTTTTTGCGTGTTG
GGGGATCTGGTGGTGTCCGTTGCTGCCGCGGGGGCAGGTAGCTTTGGAAA
CGGTGGTGGGCAACCCCTTTCAACTTCCCAAGCTCGCAGATCCCAGCAAG
GAGGACATCGACAAGTGGCATGGGCGATACGTGGAGTTGCTCGTCGACCT
TTTCGAGCGGAATAAGGCCAAATTTGGGTACGGCGAGAGGGTGCTGGAGA
TCTACTAGATGCGACGCCCCGCACATGATACAGGTGCCATGAAGGAACGT
CCACTGTCGACGCGGATCCCGGAAACCTCGTCTCCGCTCTCAGAGCGAAC
ACTTGTGCGACATGGTCTTGGTGCGTCACCCGCATTGAAAACAAGCCCGG
TGGACCAACGCCAGGCTTACACCGTGGGTTACTCCACGCCGAAATCCTAC
ACTAAGGAAGTTCCACCGGAGTTTTTCCAACGTGTATGCGACGCGGACGA
CCTGTGGACGCGTACACAGGGTGCCATAGCCTTGCTTATGCTTTGGGTGG
TGTGGCTTGCTGGTTCCTTCTGTGCCTTCTGGTGGCCTTATCTGGTCTTC
AAAGGGTATCACAAAGCTGCCATAGCGACGGCATTAATTATGGCATATCC
ATACGTGGTGAAAGTCAAGCAATCACCAGCTTTCATACGCTTTATATTGT
CGGGTGCTGGTTGGTTCAAGGGTGGCACTTGCCTTTACCTCGAGGAGTCG
ATGAAAAATGTCGAAACAAGCCAG

Synonyms

Publications