rna1322, rna1322 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1322
Unique Name	rna1322
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2376
Alignment location	CM002457.1:329778..331960 +

Link to JBrowse

Properties


Property Name	Value
Product	hsp90 chloroplast targeted
Orig transcript id	gnl\|cribi\|Naga_100028g42.3294.mrna
Orig protein id	gnl\|cribi\|Naga_100028g42.3294
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:329778..331960 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100028g42	gene1276	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1322	rna1322-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29358.1	cds1320	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:329778..331960+
coding sequence from alignment at CM002457.1:329778..331960+

mRNA sequence

>rna1322 ID=rna1322|Name=rna1322|organism=Nannochloropsis gaditana|type=mRNA|length=2376bp
ACGTGACACTCTTCACTCCTTTCGTAACCACATCGTGGCTACCAAACACT
CATGCTCATGAGCCTGCATGCACAGTCACAGGCTGGATCATCCATTGTGG
CCGTGGGATGAGAGGTCGTTCCTCCTCGTAGCGCCTTGAAATTTCCCGCT
CAAAACAAGGTTTCAATAAAGTGGCTGCCGCCTCCGACGGAGGGAGCAAA
GTTGAAAATCTGTAAGCGAGGCTTCCACGGGTGCAAGCAAGGCTTTCACG
GGCATCTGTACTGTGTGGTATTATGGTTACAGGCAGCCATCAACGCCGAG
ATGAGTCGGGGCCTGAGCTCCTATCCATGATGAACTGGGCTGCTCATTTT
CGCCTGTACAGTGAGCTTGAGGCCCTGGCTTATGCAGCTCTCAACGCAGG
TGTCTACCTGCAGTCCGATTCCCCCATCGGTCATCGAGTGTTTTTGGCAG
GATTGGAGGACATTCTAGACAAAGCCGTGGACGAGCATGACTTCGCGGCC
GTATTGGACACACTTCAAGACGCCGCCAACTGGCTCCTCAAAGCGGTGTC
AAAGCAGGAGTTGTTCGACCTTCGCTTGAAAATCCGTCGGCAGATGGTCC
TCTCCCCGTTGCGGAAAGTGTTCTCTGCAAACTCAGAAGTCGCCGTGCCG
AGTAGGGTGGCAGACTTGGACATGGACAAGTATTGGACCCTCCTGGATGG
GACCTTCCCACTGGAGACAACGCGCCGGGCATCGCTTTCCGCGGAGCGAG
GCGATTCACTGGCCAGTCCTGGGCTTCGTGAAAATTCCTACGAGAGGGTG
GTGGAGGCCAAAGAACGAAAGCAGCTCTTGGATGTGCAGGATGAGACGCG
CCCGGGCGGGGGAGCCGACATTCATAAGGTCCTCTACCTACTCAAGACCT
ACTCTCGTGAGGGTTTCACGGCCGAGGTCCGCGAATTCACCCGGCGTGTG
GAAGCCAGGCTTTTAGAGCCTCCCGAGCCTCTCTCGGAAGATCTAGATGG
GGGAGGGACGCCATCGGGGGCGTTGGGAAACGATCCAAGGCTGCTTGCAT
CGGCCCCCGCCCACATTCAACGCCGCCTTGGAGACTGGACCCGTACCAGT
GCGCTTGTTAGCAACGAGGCAGAGCGGGAGGCGACAGAGGTCAAACTACG
CGCCCACGCGCAGATTCTCCGGTATACTCTCGAGGCAGGGCAGAGAGGTT
GTCCCGGGGGGCGCCAGGAAGGGGAAAGGAAGGGCGAAGGGGCAGAAATG
GGATCGGAGGAGGAAGAAGCGGAGGCGGAGGCGGCGGAGGAGGAGGGCAT
GGCGGAAGGAAGAAGAAGAGGGTCATCGTCCAATCAAGGAATGGACGCGC
GGCATCTCGCGAAGAATCTGAGGCGAAGTACCAAGGTGTTGCGGGAAGGA
CTGAGCCAGCGGGGACTGTTGAAGATTCGCGGTACGGTTGAGGGCGGGGA
GGGCATGTCGGGCGCAGAATTGGCGCCCGGGCACAAAAAGCGCCTGTACG
ATGCGACCCGCGCCGGTCGATCCATCACTTTTGAGGACAGTCAGTACGTG
GGGGACGACAGCGATGAGGAGGGACAGCGTGCGCGCGAGAGAGAAAAGTC
GGGGAATACTGCGGCTGCCACCCAGAGCAGGCAGCTTGCGCGAGAGAATC
GGTTGGCCAAGGCCTCGGCAGCAGCAGCAGCACGGTTGGCAGAGCGCAGC
AATGCGTTTCACCAGAGAGGAGAGCATGCACAGAACCAGGTTCCATTCCC
TTTAAAAACGCGTAATCCAGGGGAGGAGCACCCTGAAGAGGACGGTGAAA
AGGAGGCAGAACAGCAGGAAGAAGGTGGAAAGAGGACAGGCGAGGCAACA
GGGGCGCCTTGCGGCGATACGGTCCTCGAAGCTGACGAGACAAGGCAGGG
TCAGGGTCGCGGACGGGGGACGAAGGATCGAGGCGGAGAACGGAAGCGAA
CAGTGGCTTCGAAAAGGAAATTGCGCTTGGCCATCGACAATTCAGGGCGG
AGCAAGCGCCGACAGCCCAAGACGCATCGCACGTCATGGTCCCAGGAGGA
AGTGGGTGATCTGAAGCGAGCCGTGCTCCACGATGGAATGAAAGGGCGGT
GGGCGGACATCCTGAATAGCCCTTCTTATACTCATCTGGACTTCAATCTG
CGGACAAGTGTAGATCTAAAGGATAAGTGGAGAGGTTTGGAGCGGAAGGC
GGCTTCCAAGGGGCTTACCGTCGCAGAAGTCGACTAAAATCAGAGACAAA
GCAACCAGCGGACCGCTGTACAAGACGCTTACGACAAAAGTAGAGGCGTG
AAGTCATGCAAAAAATGTGAAAATCCATCCGGTCGTGGAAGTCACTTCTT
TTTAAATTAGGTTGCTTGACCAATCA

protein sequence of rna1322

>rna1322-protein ID=rna1322-protein|Name=rna1322|organism=Nannochloropsis gaditana|type=polypeptide|length=590bp
MTVSAEFQADILLDKTADAGSPSRKRRKKSDVDSSPLSQSSSDVPSNAEA
VTALNDCLLDLSHIAKLKQSYPSAPGYPHCVVKDVLEAKYFRELREEMVT
SLAATFKETDLFKLYQTGDLANLDGSDPEVRRKMPRLLALRDAIYSPKFR
AFVREITGCRPLTDRTDCSSNLYTQGCHLLCHDDVIGTRCISFIIYLTDP
DETWGAEDGGALEIYPLSGDSLGVPKAVPLQNHPPKPNTMAFFTVLPGQS
FHAVEEVYSEKMRLSISGWYHADDPPMGAEALASLNQLQMRQDETPQAFS
PLRLARALHRTASGPGSVNPLLARWVNPTYLTPGAIEQIAARFQADKSIL
LHEFLLPCVAMQAARLLRSQDQADRVGGGQKPTSEVGLAMMPWELIGPPH
KQRYLRLGATGLSSDPVEKAKTATDLMAALRGLFGSEAFARYLARLTGSI
PSGVRTEARRFRPGLDYTLAHYGILTKDPRLDATLAFVDDGNKAKKELWE
SGDVGGFGCYIKAEVGNDGAEAAESYRRQAHGEEDDQVLNVSAAHNALSL
VLRETQAMRFVKYVSAAAPGSRWDVVSEYCLDGEERVSDR

mRNA from alignment at CM002457.1:329778..331960+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1322 ID=rna1322|Name=rna1322|organism=Nannochloropsis gaditana|type=mRNA|length=2183bp|location=Sequence derived from alignment at CM002457.1:329778..331960+ (Nannochloropsis gaditana)
AGCTGACAGGAGTATCGTACTGGTGCATGTTAAGTCGCCgccgcgggggg
ggaggggtgctGGGACGGCAATGCTGTCCTCAACTGGCCAGGGAACCGTG
CTTTACTTTACGAAACCACGGGACATGATACGAGACCATGGACACGCACT
AGAGCGCCCGTAAATTTTGTCGACAAGTCACATAGTGGTACAATTAACAT
CTTGCTCGTTCTTAtcacctcctcaccccccctaggaccctggaggagta
cacccctccatccacaAGCCAACACGCCAGTCCGACTATTGATCGTATTG
TAATGACGGTATCGGCAGAATTTCAAGCAGATATCTTACTGGACAAGACG
GCAGATGCCGGATCTCCGTCGCGCAAGCGCAGGAAAAAAAGCGACGTAGA
CTCATCGCCACTCTCACAGAGTTCATCCGATGTACCATCCAACGCTGAAG
CAGTGACTGCACTCAACGATTGCTTGCTGGATCTATCCCACATTGCGAAA
CTAAAGCAGAGCTATCCATCAGCCCCGGGTTATCCGCATTGTGTCGTGAA
AGACGTGCTAGAGGCAAAGTATTTTCGTGAGCTCCGCGAGGAGATGGTTA
CCTCCCTGGCGGCTACCTTCAAAGAGACCGACTTGTTCAAATTGTACCAG
ACAGGGGACCTTGCCAATCTAGACGGGAGTGATCCAGAAGTAAGACGCAA
GATGCCTCGATTGCTAGCCCTGCGTGATGCAATTTATTCCCCGAAATTTC
GCGCCTTTGTGCGGGAGATTACTGGGTGCCGACCCTTGACCGACCGCACC
GATTGCTCCTCCAATCTGTACACGCAAGGCTGCCACTTGCTCTGCCACGA
TGACGTGATTGGGACGCGTTGTATCTCCTTCATCATTTATCTCACGGACC
CGGATGAGACCTGGGGAgcagaggacggaggagccTTGGAGATCTACCCC
CTCTCTGGAGATTCCCTGGGCGTCCCGAAGGCGGTGCCTCTTCAAAACCA
TCCGCCCAAACCCAACACCATGGCATTTTTCACTGTCCTTCCTGGACAGA
GTTTCcacgcagtggaggaggtgtacAGCGAGAAGATGCGTTTGAGCATT
TCCGGCTGGTACCATGCCGACGACCCCCCCATGGGCGCCGAGGCGTTGGC
CTCCCTTAACCAGCTGCAGATGCGACAAGACGAGACCCCGCAAGCATTCT
CACCCCTTCGACTGGCACGTGCCTTGCACCGCACCGCGTCGGGGCCCGGT
TCTGTAAACCCCCTCTTGGCAAGGTGGGTCAATCCGACCTACCTGACGCC
GGGTGCCATCGAGCAGATCGCCGCACGTTTTCAGGCTGACAAGAGCATAC
TGCTGCATGAATTCTTGTTGCCCTGTGTGGCCATGCAAGCTGCACGCTTG
TTGCGGTCGCAGGACCAGGCAGacagggtgggcggggggcagaAGCCAAC
CTCCGAGGTTGGTCTGGCGATGATGCCGTGGGAGCTGATAGGCCCTCCCC
ACAAACAGCGTTACCTGCGCTTGGGGGCCACTGGTCTTTCAAGCGACCCT
GTGGAAAAAGCAAAGACGGCCACGGATTTGATGGCGGCTTTGCGTGGCCT
CTTTGGCTCGGAAGCCTTTGCCCGGTACCTCGCCCGCTTGACGGGTTCAA
TTCCAAGCGGGGTCAGGACGGAAGCCCGGCGTTTCCGTCCCGGCCTTGAC
TACACTCTGGCGCATTACGGTATTCTCACCAAGGACCCTCGGTTGGACGC
GACCCTTGCCTTCGTGGATGACGGCAACAAGGCGAAAAAGGAACTGTGGG
AATCGGGGGACGTGGGCGGTTTCGGCTGTTACATCAAGGCGGAGGTCGGG
AATGATGGTGCCGAGGCCGCTGAGAGCTACCGACGACAGGcgcatgggga
ggaggatgatcaGGTCTTGAATGTATCCGCGGCGCACAACGCGTTGAGCC
TGGTGCTGAGGGAGACCCAGGCGATGCGTTTTGTGAAATACGTGAGCGCC
GCAGCGCCGGGAAGTCGTTGGGACGTGGTGTCAGAGTATTGTTtggatgg
agaggagagggtgtcAGACAGATGAGTATCGTTTCAATACAAATGAAAAC
AAGTTTTGATATATTACTTGGCCCGAATGCACGTGAATTCTGCAACTCAA
ATTCAAGCTCTACGCTTTTGATGCCGCGAATGC

Coding sequence (CDS) from alignment at CM002457.1:329778..331960+

>rna1322 ID=rna1322|Name=rna1322|organism=Nannochloropsis gaditana|type=CDS|length=1773bp|location=Sequence derived from alignment at CM002457.1:329778..331960+ (Nannochloropsis gaditana)
ATGACGGTATCGGCAGAATTTCAAGCAGATATCTTACTGGACAAGACGGC
AGATGCCGGATCTCCGTCGCGCAAGCGCAGGAAAAAAAGCGACGTAGACT
CATCGCCACTCTCACAGAGTTCATCCGATGTACCATCCAACGCTGAAGCA
GTGACTGCACTCAACGATTGCTTGCTGGATCTATCCCACATTGCGAAACT
AAAGCAGAGCTATCCATCAGCCCCGGGTTATCCGCATTGTGTCGTGAAAG
ACGTGCTAGAGGCAAAGTATTTTCGTGAGCTCCGCGAGGAGATGGTTACC
TCCCTGGCGGCTACCTTCAAAGAGACCGACTTGTTCAAATTGTACCAGAC
AGGGGACCTTGCCAATCTAGACGGGAGTGATCCAGAAGTAAGACGCAAGA
TGCCTCGATTGCTAGCCCTGCGTGATGCAATTTATTCCCCGAAATTTCGC
GCCTTTGTGCGGGAGATTACTGGGTGCCGACCCTTGACCGACCGCACCGA
TTGCTCCTCCAATCTGTACACGCAAGGCTGCCACTTGCTCTGCCACGATG
ACGTGATTGGGACGCGTTGTATCTCCTTCATCATTTATCTCACGGACCCG
GATGAGACCTGGGGAgcagaggacggaggagccTTGGAGATCTACCCCCT
CTCTGGAGATTCCCTGGGCGTCCCGAAGGCGGTGCCTCTTCAAAACCATC
CGCCCAAACCCAACACCATGGCATTTTTCACTGTCCTTCCTGGACAGAGT
TTCcacgcagtggaggaggtgtacAGCGAGAAGATGCGTTTGAGCATTTC
CGGCTGGTACCATGCCGACGACCCCCCCATGGGCGCCGAGGCGTTGGCCT
CCCTTAACCAGCTGCAGATGCGACAAGACGAGACCCCGCAAGCATTCTCA
CCCCTTCGACTGGCACGTGCCTTGCACCGCACCGCGTCGGGGCCCGGTTC
TGTAAACCCCCTCTTGGCAAGGTGGGTCAATCCGACCTACCTGACGCCGG
GTGCCATCGAGCAGATCGCCGCACGTTTTCAGGCTGACAAGAGCATACTG
CTGCATGAATTCTTGTTGCCCTGTGTGGCCATGCAAGCTGCACGCTTGTT
GCGGTCGCAGGACCAGGCAGacagggtgggcggggggcagaAGCCAACCT
CCGAGGTTGGTCTGGCGATGATGCCGTGGGAGCTGATAGGCCCTCCCCAC
AAACAGCGTTACCTGCGCTTGGGGGCCACTGGTCTTTCAAGCGACCCTGT
GGAAAAAGCAAAGACGGCCACGGATTTGATGGCGGCTTTGCGTGGCCTCT
TTGGCTCGGAAGCCTTTGCCCGGTACCTCGCCCGCTTGACGGGTTCAATT
CCAAGCGGGGTCAGGACGGAAGCCCGGCGTTTCCGTCCCGGCCTTGACTA
CACTCTGGCGCATTACGGTATTCTCACCAAGGACCCTCGGTTGGACGCGA
CCCTTGCCTTCGTGGATGACGGCAACAAGGCGAAAAAGGAACTGTGGGAA
TCGGGGGACGTGGGCGGTTTCGGCTGTTACATCAAGGCGGAGGTCGGGAA
TGATGGTGCCGAGGCCGCTGAGAGCTACCGACGACAGGcgcatggggagg
aggatgatcaGGTCTTGAATGTATCCGCGGCGCACAACGCGTTGAGCCTG
GTGCTGAGGGAGACCCAGGCGATGCGTTTTGTGAAATACGTGAGCGCCGC
AGCGCCGGGAAGTCGTTGGGACGTGGTGTCAGAGTATTGTTtggatggag
aggagagggtgtcAGACAGATGA

Synonyms

Publications