rna131, rna131 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna131
Unique Name	rna131
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1839
Alignment location	CM002455.1:346407..349239 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100013g93.9770.mrna
Orig protein id	gnl\|cribi\|Naga_100013g93.9770
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:346407..349239 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g93	gene125	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30482.1	cds131	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna131	rna131-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:346407..349239-
coding sequence from alignment at CM002455.1:346407..349239-

mRNA sequence

>rna131 ID=rna131|Name=rna131|organism=Nannochloropsis gaditana|type=mRNA|length=1839bp
CGGCGCTATCCCTAAAAAGCTTGAAGCTACGGTCGATCCTAAGACCCAGA
CACTTAATCGCATTGACTTGGTTTTTAATTGTTCGCGGGGCAATGTCTTG
GGTTTGCGACAAAAAATGCGGTCAGACCGCGCGCACCATTTTCCTCTCCT
TGCGAGGCACACGATGTCTTTCGCTTCTCATGACCTCGCTCCTCCTCCTC
CCTTTCTGTTCTGAGACGGTATTGGATGGAACGCTGTGATAATGAATGAC
CGCAACTAATGCACAATATGTTTGTCCGAATACCATAAGGCGTCGATACC
ACACGTACGGTTGTCAATTCTTTTGACGCTGTAGGCGCATCACAAGGTGT
GAACAAGTCTCTTTGAGGAGGCCCATGCCTCTCTCTACTGTGATCCATGG
GCATGAACCGTCGCAAAATGTGCGAAATTAATCACTATTTTGTGATGACA
ACTGAGAAAATTTGTGGTAAATGACACGATGGCTCTCATTATTCAGGTAT
CTGAAATCGCTACATTACAATCATACATTCAATTTCGTCTTCTTGCTACT
CGTCGATCAAGGTGAGGCAAGCATCGCTTTCAGTTGCATGATGAAGACAA
GTCGGAGCGAGGTTGGTGAGATCACCCCCGAAGAGGATATCAACCAGGAA
AGCAAGACACTAATGGACGGCCCCGCGATGCGTCCTGAAGCGAAGGACGG
TATTGCCCGAGTCCCGGCCTCAACTGCCTCCACGGTACCCGCCATACCCG
CCGGTCAGGCCGCCTCTGCGCATAACTGTAGGGTAATTTCCAGCCAAAAT
GTCGGTGTGAATGGCCAGACATCCAGCACATGGCAGGCGTACCGACAGTC
GCGTCTCTCTACTTTAGCGAAGTGGATTTATATCTTGATGATATCCCTGT
TTTTGGTTGCGCTCTACTGCGGGGACTTTTCTTCCCAGCAGCGCACCCAT
CAGGTTTTACCTCGAATCACCAAAAAAGTGGCACTCATGCTGGAGACCTA
CTCGCAGCAATTGGACGCTCTTGGCTTACCGCGCATCGACATGACTCAAT
TCTGGAACGGACTGGCAGACAAGGCACCGGCGCGCTTTTCAGTGCTGCAA
CCACTTGAGTGTCCAGCACTGGCCCGAGGCACGGTTATGCACGCAGGAGA
CTACATCTATGCATGCGTGGAAGAAGGAGGAAATGCTGGAAAGGAATGCA
ATCCTACATTCTTCCATCTGAAAGATGACGGCTCATTGCTTTTGGCGCGC
GGGACCACGCCGAAGAGAGCCATCCGCACGATCTGGAAGAGTAAAGCAGG
GCCGGTCAAGCACGGGAAGTATGTGGCTACGTATGGAGAGAATGGCGCGC
TGGAGGTCTACTTGGGAGAGAAAAGGATTTGGAGGGCTCGCAAGTTCTTC
CAGCCCCGAGTGCTGCGTCCATGGCCCTTGACCAAGTAGACAGGAGCGTC
TGGGTAGCGTGAGGGCGCATGGAGGGGTAACGAAGGTCAAGGCTGGAGAA
ATTCGGGACATGATTTGTGTTGTAAAACTTCTTGGGACCAATACGGACGC
CACAGGGACGATTACCTCTGGGGCGGCATTTTTACTTCAGGCGCAAGACG
ATGAACTTTTGTTGTATGGTATCCGGTTTGAGCAGTTGCGACGGGAGGGT
CAAATTAGGGTCACTTTTTTACGGAGGATACATTCGGAAAGATAGGATAA
GGAGATACCTAAAGCAAAGCTCGCGCAATTCAGCGGATTGAATTATGGGT
GTTACTCGCCTGTACACCGTCATTTTCGAAACGATAAATTACTTCCACAT
ACTCGTTCGATACAGAGTGTCGTCACAATTTATTTCACT

protein sequence of rna131

>rna131-protein ID=rna131-protein|Name=rna131|organism=Nannochloropsis gaditana|type=polypeptide|length=756bp
MDKLTKLIPAKPDNDDEGKSSLPPLELTALQEEVQQLRIERSRKEASETS
LLGELQRRCNRVIELETQLDDTRGQARRLQLECDAHRANQKQLMSLLRAT
SSHTSTDIIDECPVVESVVALKAHIAALEQGRWDGKRLAAQQEEEVGSLR
TQMEELKRVLVAAENKAGHTAAGEDHKEGAPSARDLGLPEDVHVLLQRCP
WTEAVLGNILVTEELYEWEAWSLFHGWSGAAAHLSQATPDFRDMVLQCTD
PPKASTSHSDGDGPRPAYRRQDKTITDVGCTTLVNPDAVVLPAVGWEWLG
GWRPEDGKEGGSGAKALGAMDQEGWSYGTSCEELVRGHGSESMLIPVAGP
GARPGQGGVAEEAGSIQGSGSNTAASPTKPAPQKRRIRRRRWVRVRVLAH
VPGASDMVNGFLGLRARVASLEAVARKLSEQVLSLQGALNDREVQAARSD
ALERALVAMQGRLQKAERSLGRCRQQLAGREEDARVQSRDKEGHKEGQEG
GGLRAVGEAVSEWFAGLGSESIQGQGLSRDEGGKDEPVGGGEGREESGGL
KKWLFDVKSSLGRGNGVDAAACFETEGHGTQEDAHLTPAVAQGTSRTGVH
AGNSTEGRGDKPVHNGDADGGATPLIKNAFRWFSKEVLQHASGEDPIESW
AEDGGETGLERVEHRVNQGGNGEEREDENVPIEHLSETEIAKLRKQLYDN
EEKKEAGKTARDGGAGLGRNEPESISGHERGSTPIGSDDQALPTRTPIPA
THNTSA

mRNA from alignment at CM002455.1:346407..349239-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna131 ID=rna131|Name=rna131|organism=Nannochloropsis gaditana|type=mRNA|length=2833bp|location=Sequence derived from alignment at CM002455.1:346407..349239- (Nannochloropsis gaditana)
CCAGGAGCGTCAATGTTTAGCAAGGAGTATTTTGGTTTATGCGGGGGTGA
TGTAGCAAAAGAAGTCGGGCATGGAACCGCGCAACAAAGAAAGGGTTCTC
GTATGTTGCGGCCGATGGGAGGGCGGGACCTCGACCTCCTGCCCCTGCCT
TCTTCCTCCCCCATGCACTAGACTCTAGTTCTACGAGATTTTGAAGCTCT
ATGTTTCCCTCATTGGGGCAGCATGTGCGGAGATCACACGGAAAATTGCT
GAGGAATGAAGGCGTTGTACCTTCTCAATCCTTTTCCTCGTTCTCATCGT
GAGCTGTGACCTCCCAGCTACAGGCAGGCGAAGGATCATTTCCTTGCTCC
GAGAAGCGAACCTAGGGTTTTTACAAGAACGTTATTGCTTCCGATATTAT
CTGCCTTGGGGCCTCATAATCAATCCATACGCCTCATATAAGGGTACTGC
GTGGTAAATTGGCCCCATAAGATGGATAAACTAACGAAACTAATCCCTGC
CAAGCCCGATAATGACGATGAAGGGAAGAGCAGCTTGCCCCCTCTGGAGC
TGACGGCATTACAAGAGGAAGTGCAGCAATTGCGGATAGAAAGGTCGAGG
AAGGAGGCCTCTGAGACGTCGCTCCTCGGAGAGTTGCAACGTCGGTGCAA
TCGAGTAATTGAGCTCGAGACGCAGCTTGACGACACGAGGGGGCAAGCGC
GGCGTCTTCAGTTGGAGTGCGATGCACACCGCGCCAATCAAAAGCAGCTC
ATGAGCTTACTCCGTGCCACAAGCAGCCACACAAGCACTGACATTATCGA
TGAGTGTCCGGTGGTGGAGTCTGTCGTCGCATTAAAAGCGCACATAGCTG
CGTTGGAGCAAGGGCGATGGGATGGGAAGCGGCTGGCAGCGCAACAAGAA
GAGGAGGTAGGTTCTTTACGAACGCAGATGGAGGAGCTCAAGCGCGTTTT
AGTGGCAGCAGAAAATAAAGCGGGTCACACCGCTGCCGGAGAAGACCACA
AGGAGGGTGCACCATCTGCGAGGGATCTTGGGCTCCCAGAGGACGTGCAC
GTGCTCCTGCAACGGTGCCCCTGGACGGAGGCGGTCTTGGGCAACATCTT
GGTGACAGAGGAGCTGTACGAATGGGAGGCGTGGTCCCTCTTCCACGGAT
GGAGCGGGGCAGCGGCGCACCTATCACAAGCAACGCCGGACTTTCGTGAT
ATGGTCTTGCAGTGCACGGACCCGCCAAAAGCGTCCACATCGCATTCCGA
CGGCGACGGGCCGCGGCCGGCGTACCGACGGCAGGACAAAACGATCACAG
ACGTGGGGTGCACGACCCTGGTCAACCCTGACGCTGTGGTGCTCCCGGCC
GTGGGGTGGGAGTGGCTGGGGGGCTGGCGGCCCGAGGATGGGAAGGAGGG
AGGGAGTGGAGCCAAGGCTCTTGGCGCGATGGACCAGGAGGGCTGGAGTT
ACGGCACGAGCTGCGAGGAGTTAGTCAGGGGACACGGGTCTGAGAGCATG
CTGATCCCCGTGGCGGGGCCTGGGGCGCGGCCAGGACAGGGAGGGGTTGC
CGAAGAGGCGGGCAGCATCCAAGGCAGTGGCAGCAATACGGCGGCCAGCC
CCACAAAGCCCGCTCCTCAGAAGCGGCGGATCCGTCGACGGCGCTGGGTG
CGTGTCCGTGTCCTCGCCCACGTCCCTGGAGCCTCCGACATGGTGAACGG
CTTCTTAGGCTTGCGTGCCCGTGTCGCTTCCCTCGAGGCCGTGGCCCGGA
AACTCTCGGAGCAAGTCTTGAGCCTGCAGGGTGCCTTGAACGACCGAGAG
GTTCAGGCAGCACGGTCGGATGCGTTAGAGCGCGCGCTGGTGGCGATGCA
GGGACGCTTGCAGAAAGCAGAGCGGAGTCTAGGGCGGTGTAGACAGCAAT
TGGCAGGCCGTGAGGAAGACGCGCGGGTGCAATCCCGGGACAAGGAGGGG
CACAAGGAGGGACAGGAGGGCGGGGGGCTGAGAGCGGTGGGAGAGGCTGT
CTCCGAGTGGTTCGCGGGGTTGGGCAGTGAGAGCATTCAAGGGCAGGGTC
TGAGTCGGGATGAGGGGGGGAAGGACGAGCCAGTGGGCGGAGGGGAAGGG
CGAGAGGAAAGCGGGGGGTTGAAGAAATGGCTCTTCGATGTAAAATCCTC
CTTGGGGAGGGGCAACGGAGTCGATGCCGCCGCCTGCTTTGAGACGGAAG
GGCATGGGACTCAGGAAGATGCACATTTAACCCCCGCCGTTGCCCAAGGC
ACCTCGAGGACAGGCGTTCACGCAGGTAACAGCACAGAAGGCCGGGGCGA
TAAGCCCGTGCATAACGGAGACGCTGATGGAGGAGCAACCCCTCTCATCA
AGAATGCTTTTCGATGGTTCTCGAAGGAAGTCTTGCAGCATGCTTCGGGG
GAGGATCCGATCGAAAGCTGGGCTGAAGACGGGGGCGAGACTGGACTCGA
GCGCGTTGAGCATCGGGTCAATCAGGGTGGCAATGGCGAGGAGAGGGAGG
ACGAAAACGTCCCGATCGAGCACTTGAGCGAGACAGAAATAGCCAAATTG
CGAAAGCAATTGTACGATAACGAGGAAAAGAAAGAGGCTGGGAAGACTGC
GCGCGACGGTGGGGCGGGCTTGGGGAGAAACGAGCCGGAGAGCATCAGTG
GTCATGAGAGAGGTAGCACCCCCATAGGCAGTGATGACCAGGCGTTACCA
ACGCGGACACCGATTCCAGCGACGCACAACACGAGTGCTTAAGTGAAATA
AATTGTGACGACACTCTGTATCGAACGAGTATGTGGAAGTAATTTATCGT
TTCGAAAATGACGGTGTACAGGCGAGTAACACC

Coding sequence (CDS) from alignment at CM002455.1:346407..349239-

>rna131 ID=rna131|Name=rna131|organism=Nannochloropsis gaditana|type=CDS|length=2271bp|location=Sequence derived from alignment at CM002455.1:346407..349239- (Nannochloropsis gaditana)
ATGGATAAACTAACGAAACTAATCCCTGCCAAGCCCGATAATGACGATGA
AGGGAAGAGCAGCTTGCCCCCTCTGGAGCTGACGGCATTACAAGAGGAAG
TGCAGCAATTGCGGATAGAAAGGTCGAGGAAGGAGGCCTCTGAGACGTCG
CTCCTCGGAGAGTTGCAACGTCGGTGCAATCGAGTAATTGAGCTCGAGAC
GCAGCTTGACGACACGAGGGGGCAAGCGCGGCGTCTTCAGTTGGAGTGCG
ATGCACACCGCGCCAATCAAAAGCAGCTCATGAGCTTACTCCGTGCCACA
AGCAGCCACACAAGCACTGACATTATCGATGAGTGTCCGGTGGTGGAGTC
TGTCGTCGCATTAAAAGCGCACATAGCTGCGTTGGAGCAAGGGCGATGGG
ATGGGAAGCGGCTGGCAGCGCAACAAGAAGAGGAGGTAGGTTCTTTACGA
ACGCAGATGGAGGAGCTCAAGCGCGTTTTAGTGGCAGCAGAAAATAAAGC
GGGTCACACCGCTGCCGGAGAAGACCACAAGGAGGGTGCACCATCTGCGA
GGGATCTTGGGCTCCCAGAGGACGTGCACGTGCTCCTGCAACGGTGCCCC
TGGACGGAGGCGGTCTTGGGCAACATCTTGGTGACAGAGGAGCTGTACGA
ATGGGAGGCGTGGTCCCTCTTCCACGGATGGAGCGGGGCAGCGGCGCACC
TATCACAAGCAACGCCGGACTTTCGTGATATGGTCTTGCAGTGCACGGAC
CCGCCAAAAGCGTCCACATCGCATTCCGACGGCGACGGGCCGCGGCCGGC
GTACCGACGGCAGGACAAAACGATCACAGACGTGGGGTGCACGACCCTGG
TCAACCCTGACGCTGTGGTGCTCCCGGCCGTGGGGTGGGAGTGGCTGGGG
GGCTGGCGGCCCGAGGATGGGAAGGAGGGAGGGAGTGGAGCCAAGGCTCT
TGGCGCGATGGACCAGGAGGGCTGGAGTTACGGCACGAGCTGCGAGGAGT
TAGTCAGGGGACACGGGTCTGAGAGCATGCTGATCCCCGTGGCGGGGCCT
GGGGCGCGGCCAGGACAGGGAGGGGTTGCCGAAGAGGCGGGCAGCATCCA
AGGCAGTGGCAGCAATACGGCGGCCAGCCCCACAAAGCCCGCTCCTCAGA
AGCGGCGGATCCGTCGACGGCGCTGGGTGCGTGTCCGTGTCCTCGCCCAC
GTCCCTGGAGCCTCCGACATGGTGAACGGCTTCTTAGGCTTGCGTGCCCG
TGTCGCTTCCCTCGAGGCCGTGGCCCGGAAACTCTCGGAGCAAGTCTTGA
GCCTGCAGGGTGCCTTGAACGACCGAGAGGTTCAGGCAGCACGGTCGGAT
GCGTTAGAGCGCGCGCTGGTGGCGATGCAGGGACGCTTGCAGAAAGCAGA
GCGGAGTCTAGGGCGGTGTAGACAGCAATTGGCAGGCCGTGAGGAAGACG
CGCGGGTGCAATCCCGGGACAAGGAGGGGCACAAGGAGGGACAGGAGGGC
GGGGGGCTGAGAGCGGTGGGAGAGGCTGTCTCCGAGTGGTTCGCGGGGTT
GGGCAGTGAGAGCATTCAAGGGCAGGGTCTGAGTCGGGATGAGGGGGGGA
AGGACGAGCCAGTGGGCGGAGGGGAAGGGCGAGAGGAAAGCGGGGGGTTG
AAGAAATGGCTCTTCGATGTAAAATCCTCCTTGGGGAGGGGCAACGGAGT
CGATGCCGCCGCCTGCTTTGAGACGGAAGGGCATGGGACTCAGGAAGATG
CACATTTAACCCCCGCCGTTGCCCAAGGCACCTCGAGGACAGGCGTTCAC
GCAGGTAACAGCACAGAAGGCCGGGGCGATAAGCCCGTGCATAACGGAGA
CGCTGATGGAGGAGCAACCCCTCTCATCAAGAATGCTTTTCGATGGTTCT
CGAAGGAAGTCTTGCAGCATGCTTCGGGGGAGGATCCGATCGAAAGCTGG
GCTGAAGACGGGGGCGAGACTGGACTCGAGCGCGTTGAGCATCGGGTCAA
TCAGGGTGGCAATGGCGAGGAGAGGGAGGACGAAAACGTCCCGATCGAGC
ACTTGAGCGAGACAGAAATAGCCAAATTGCGAAAGCAATTGTACGATAAC
GAGGAAAAGAAAGAGGCTGGGAAGACTGCGCGCGACGGTGGGGCGGGCTT
GGGGAGAAACGAGCCGGAGAGCATCAGTGGTCATGAGAGAGGTAGCACCC
CCATAGGCAGTGATGACCAGGCGTTACCAACGCGGACACCGATTCCAGCG
ACGCACAACACGAGTGCTTAA

Synonyms

Publications