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Properties
| Property Name | Value |
|---|
| Product | small nuclear ribonucleo protein |
| Orig transcript id | gnl|cribi|Naga_100028g22.3301.mrna |
| Orig protein id | gnl|cribi|Naga_100028g22.3301 |
| Gene | SmD3 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:289488..290699 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1305 ID=rna1305|Name=rna1305|organism=Nannochloropsis gaditana|type=mRNA|length=1857bp
ATGAAGCGGAGGCTGCGTGGGAGCAGCCAAGATCCTCCTTATGCCTTGTC
TCGGAATGCCTCTGCCACCGCAGCCGTCGTGGTGGTGGCCCTCTCATGTT
TGTGGAGCACGACCCGGGCGTTCCACATGCCATCAACCTCTAGGCCGTTC
TCCCGGTCGCTTCATCGCAGCGTCGCTCGCATCAGACCGCAAGGTTCCAG
CCTGATGGCAAAGAGAGATGCACCGGGAGGCGGCGATGTTTTGGTCATTG
GAGGGGGCCTGGCGGGCTTGTCGACTGCACTGGAGCTTTCCCAACGCGGA
GCCAAGGTAGTGGTCGTGAGTAGGGACGAAGCTGAATCGGCCAGTATGGC
AGCGGGGGGCATGCTGGCTCCTCAGGCGGAACGCCTAGAAGCCGGTCCGT
ACCTGGATTTGTGCTTGCAAAGCCGCGACATGTACAGCGAGTGGGCCGCA
GATCTGGAGCAATGGTCGGGTGGGATCTCCACTGGGTTCGCCGCCGCAGG
GGGGTTTTTAGCACCTGCCTTCACGGGCGATCAGGTGGATGGTTGGGTGC
CCCCCCCGGGGGCAGGGCCGGCCTACCGTTTAGATGGGCCGCAAATCCGA
GGCATGGAGCCAGCCTTGTCGCCGCACGTGACCGGGGGCTGGTGGTACCC
CGAGGACATGCAAGTGGACGCCCGTCGTCTCTTTCGCGCACTCCGGGAGG
CGTGCCTGCGGGCGGGCGTCAGTGTCTTGGAGGGGTCCGAATGGGCGGTG
GAGGCCCTGGTCTTCCATCCCGCCTTGCCAGCCGTCCAGGCGGTCAAAAT
GAGCGACGGGCGCCGGCTTTCGTTCGCACAGGTCGTGGTTGCGAACGGTG
CGTGGATGAACCGCCTGTTGCCCGTGCCGGTGGGCCCTGTGAAAGGGCAA
ATGCTCTCATTGCGCCCGAAAAAGGGCGAACCCAACCCCTTGACCCGGGT
CATCTTCGCGGAGAATTGCTACTTGATTCCCAAGGCGGATGGCCGCCTCA
TCGTAGGCGCCACCGTGGAGGCAGGGCAGTGGGATCGGGGGGTAACGGCG
AAGGGTATCCACGACTTGACCCAACGGGCCTTGCAAATCTGCCCGGCGTT
GGGGAACTTGGAACTGGAAGAGACATGGGCCGGTCTGCGCCCTACCACCC
CCGACACCCTCCCTGTGCTGGGAAGCACGCCCTGGGAGAACCTCTTCGTG
GCTGGAGGGTATTGGCGGAACGGCGTCTTGCTGGCGCCCCGTACGGGCCA
GCTGGTGGCTGATTGTGTGGAGGGGAAGGTGGGTGCCGACGATGCGGCCC
TCCTTTCCCACTTTGCATGGAGCCGGTTTTTGCCTTCCCGAGTCGGAGAA
GCCCGGCAAGGAAGCAAAAAGTCAGCTGCGACCGTGGCCGCCGACGCGAC
AGTGGGGGATAAAAGGAGCGCTGAATCCATGTCTCTTTCGAAGCCGCCTC
GTGGAGCGACAAGTCCTGCGGCAGACACCAGCGCCGGGGGACCAACGCCG
TCTTCTCCTACCGCCCCCGCAGATACAGTCACTCACCATGACGACCCGTA
CGTGGACTATGCTCAGTTGAAGGCGGCGGGCAACGTAGAGGACACGGAGG
CGATCATTCGGGAGGCGCGGCGGGTGAACCGGGAGGGTCTGGTGGGGTAC
GGGCTGGGGGAGGACGCGGTGGGGAGGGAGACGGCGAGTAAGTTCAACGT
GCCGAGTGCGGGCATGGGCCAGGAATGGTCGGCATTTGAGGCGGCGGCGG
AGCAAGGAGTCCATGACATGGGCCGCTTTGACGTGGACTACTTGAAAGAC
GACTCTACACTTGAATCGGGATGCCCTGTCCACAGGGCCAGATGCAGTGC
ACCATGA back to topprotein sequence of rna1305 >rna1305-protein ID=rna1305-protein|Name=rna1305|organism=Nannochloropsis gaditana|type=polypeptide|length=119bp
MATMKALSVPVKLLKEGEGHVVTAELKSGEVYRGLLMESEDTMNVHLSDV
THTARNGKVRKLEQVYLRGSHLKFIVLPEILKHAPVFKKVQGMKKKESSK
TAGRGRGGAFRGKKRKAGN back to topmRNA from alignment at CM002457.1:289488..290699+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1305 ID=rna1305|Name=rna1305|organism=Nannochloropsis gaditana|type=mRNA|length=1212bp|location=Sequence derived from alignment at CM002457.1:289488..290699+ (Nannochloropsis gaditana)
GAAGAGTGCACGTAAAACCAGACTCACAGGGTGTGAAAAGAACGTCGCTT
CCAAATAAGATATGACCACTTATACGCGCGAAGGCTTCCATACAGAGTGT
TCATGAAGGGCCTCGCCATTGATGCAGTCCATAGACTTGCCAATGCTGAT
AGAATAGGACTTTCCACGACAagctccaccaccactgTGGCGAACACGAC
CACACCGTGCAATCAGacgctctttctcttcaccCGTGCCCCCGCGCTTT
TCTCTCGGCTTCATCGCTCACGTCCATTGTGACTGCTACCCCACTGCACA
GAAGAGATTTGCGGGCTTATCGAAGTACGGAAGCGGGTTCAAAGGGAGCA
GTTCTTCCCTTGCGAACGTAGGCATGGCCACCATGAAAGGTTTGTTTGCG
TTTCCGCTTTGCACTTTACTTGGGCATCTTTTAAAGGAGAGTCGGTCTCT
TGTAACACAATTACTTTGCTCTACATTCTTCACCAACTTGCTCTTTTGTG
ATGTCGCGGGCAGGACGAGGGGTGGGTCTGATATCTCGTGCCTCGACGTA
ACGCTACCATCTCCCGTTCCCATGCCACAATTTCTCCACTTACCCTTACA
CACAGCGCTCAGCGTGCCAGTTAAGCTGctaaaagaaggagagggtcaTG
TGGTCACGGCAGAACTAAAATCCGGGGAGGTCTATCGAGGATTGTTGATG
GAATCTGAAGACACAATGAACGTCCACCTCTCGGACGTCACACACACCGC
ACGGAACGGCAAAGTCCGTAAATTGGAACAAGTGTACTTGAGAGGGAGCC
ATCTCAAATTCATCGTGCTACCAGAGATCCTCAAGCACGCTCCTGTGTTC
AAGAAGGTGCAGGgcatgaaaaagaaggagagcagcaAGACGGCGGGCAG
AGGCCGCGGGGGAGCTTTtcgggggaagaagaggaaggccgggAACTAAT
GCACATGTATCGACGTGATtgaccccgccttcccttgTGCGATTGCCCAC
ACGTCGAccagatggagaagaaaagtTATGCGGTCGATCATGAAAGGAGG
AGTTCGGCGCCCGCTGGGGCCTCCCACAATAAGCAGCCGTTCTCGAGACC
AATCCTCGTCAATGCCAGCGCTGCAGACGTGCGTGATAAGGTCCATGGAC
AGCGACCTACCCGAAATACGTTTTCTGTCCCATTTAAAAGAAAAAACAAG
ATCTGTGTAACA back to topCoding sequence (CDS) from alignment at CM002457.1:289488..290699+ >rna1305 ID=rna1305|Name=rna1305|organism=Nannochloropsis gaditana|type=CDS|length=720bp|location=Sequence derived from alignment at CM002457.1:289488..290699+ (Nannochloropsis gaditana)
ATGGCCACCATGAAAGCGCTCAGCGTGCCAGTTAAGCTGctaaaagaagg
agagggtcaTGTGGTCACGGCAGAACTAAAATCCGGGGAGGTCTATCGAG
GATTGTTGATGGAATCTGAAGACACAATGAACGTCCACCTCTCGGACGTC
ACACACACCGCACGGAACGGCAAAGTCCGTAAATTGGAACAAGTGTACTT
GAGAGGGAGCCATCTCAAATTCATCGTGCTACCAGAGATCCTCAAGCACG
CTCCTGTGTTCAAGAAGGTGCAGGgcatgaaaaagaaggagagcagcaAG
ACGGCGGGCAGAGGCCGCGGGGGAGCTTTtcgggggaagaagaggaaggc
cgggAACTAAATGGCCACCATGAAAGCGCTCAGCGTGCCAGTTAAGCTGc
taaaagaaggagagggtcaTGTGGTCACGGCAGAACTAAAATCCGGGGAG
GTCTATCGAGGATTGTTGATGGAATCTGAAGACACAATGAACGTCCACCT
CTCGGACGTCACACACACCGCACGGAACGGCAAAGTCCGTAAATTGGAAC
AAGTGTACTTGAGAGGGAGCCATCTCAAATTCATCGTGCTACCAGAGATC
CTCAAGCACGCTCCTGTGTTCAAGAAGGTGCAGGgcatgaaaaagaagga
gagcagcaAGACGGCGGGCAGAGGCCGCGGGGGAGCTTTtcgggggaaga
agaggaaggccgggAACTAA back to top
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