rna1304, rna1304 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1304
Unique Name	rna1304
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1455
Alignment location	CM002457.1:287274..289130 -

Link to JBrowse

Properties


Property Name	Value
Product	glycine oxidase
Orig transcript id	gnl\|cribi\|Naga_100028g21.3305.mrna
Orig protein id	gnl\|cribi\|Naga_100028g21.3305
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:287274..289130 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100028g21	gene1258	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29369.1	cds1302	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1304	rna1304-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:287274..289130-
coding sequence from alignment at CM002457.1:287274..289130-

mRNA sequence

>rna1304 ID=rna1304|Name=rna1304|organism=Nannochloropsis gaditana|type=mRNA|length=1455bp
ATGGCGCGTCATGGCTACGAATATGAAAATCCGCGGGAAGCGAGAGCGAG
AGAGAAAGAGATGCGACGCCAGATGACTCAAATGGGCATGGTCCCTCCCC
CCCCAACATCAGAAGCACTCGGTGGGAAAGGGAAAAGGGAGACAGAAGGG
GACGCGTACGAGGAATACTACAGCTCCGAGGAGCGGGAACAGGTGGGATG
GGAGGTGGTGCGGCAGATGGAGAAGGAGGAGGAGAAGCGATGCGAGCACG
GTCTCGTGAAAGCACAGGGTACCCACCGTAACGACCCGTACGCGGACTAT
GCTCAGTTGAAGGCGGCGGGCAACGTAGAGGACACGGAGGCGATCATTCG
GGAGGCGCGGCGGGTGAATCGGGAGGGTCTGGTGGGGTACGGCCTGGGGG
AGGACGCGGTGGGGAGGGAGACGGCGAGTAAGTTCAACGTGCCGAGTGCG
GGCATGGGCCAGGAATGGTCGGCGTTTGAGGCGGCGGCGGCGCAAGGGAT
CCAGGATATGGGCCGCTATCAAGACATTGGGGGTGGAGCTTCCTCTCAAA
AAGGCAGCGGGAGCACCCTGGAGGCGGAGGAGGAAATGGGCATCGAGGAG
TTCATGGCTCGCCTGGGGTACGAGTATGCGGACCCTCGGGTGGCTAAATC
GCAGGGCGAGGTCGAGTCGCGCCCCGTCGATGACCCTACGTCTTCTTCCA
CCGAGTCCAGCTTTCAATCGCTCGCGGCCCCCTCCACATCTGTTGGCAAC
GCGTTCCCCCGACCTCAGACAATCGCACCCCCTGCGGCCTCGCCCGACGC
CTCGCCAAGTCCATTCAACACCATCCAGCCTTTACCACCGCGGGCGGACC
AATCGCCCCCACCTTGGGCGCATGAAATCGAGGCTCTCTACGACCGTGTG
CGTGCCAATCAAGCGGCGGCCCGGCGTCGGCAAGGCCTACCTCCCCTGCC
CGGCGATGCGGATGTGATGCTTCCTTTCATACACCCTCCAGGAGACCAGC
CCCTCGACCCGCAGGGACGCCCTCGGCAGTTGACAACCGAAGAGGTGCTG
AGCAAGTTGGAGATGGTGCGTGTGAATCCGGACGGGTCTTTCACCAAAGT
GGAAGCCGGTCAAGGCGTGCCAACTGTCACCAAGCTTAAACCGTCGAGAG
GTGGGCAGCAGGGAAGGGATACGTTCTCCCTACGGATGGCAGGGGATCCG
GCGAAGGAAGCGAAAGAGAAAGTAGACGAGGACCTGGTATCACGTTTGGC
ACGTTGGAGCACAGAGTGGGCAACGGGGGGGAGGGACGTTGCTGTGTATA
GCGGCAGCAAGTTAGGAACATCGCGCAGGCACAGTTACCATAGCGTTTCA
AACATTAGCGACGGCGGCAGTGACTGTTGCCGAAATCATCAGCACCCTGA
CAGCATGGGCCGTCATACGAGAGAGGGACTGACGTGGGGCTCTGAGGACA
TGTAA

protein sequence of rna1304

>rna1304-protein ID=rna1304-protein|Name=rna1304|organism=Nannochloropsis gaditana|type=polypeptide|length=618bp
MKRRLRGSSQDPPYALSRNASATAAVVVVALSCLWSTTRAFHMPSTSRPF
SRSLHRSVARIRPQGSSLMAKRDAPGGGDVLVIGGGLAGLSTALELSQRG
AKVVVVSRDEAESASMAAGGMLAPQAERLEAGPYLDLCLQSRDMYSEWAA
DLEQWSGGISTGFAAAGGFLAPAFTGDQVDGWVPPPGAGPAYRLDGPQIR
GMEPALSPHVTGGWWYPEDMQVDARRLFRALREACLRAGVSVLEGSEWAV
EALVFHPALPAVQAVKMSDGRRLSFAQVVVANGAWMNRLLPVPVGPVKGQ
MLSLRPKKGEPNPLTRVIFAENCYLIPKADGRLIVGATVEAGQWDRGVTA
KGIHDLTQRALQICPALGNLELEETWAGLRPTTPDTLPVLGSTPWENLFV
AGGYWRNGVLLAPRTGQLVADCVEGKVGADDAALLSHFAWSRFLPSRVGE
ARQGSKKSAATVAADATVGDKRSAESMSLSKPPRGATSPAADTSAGGPTP
SSPTAPADTVTHHDDPYVDYAQLKAAGNVEDTEAIIREARRVNREGLVGY
GLGEDAVGRETASKFNVPSAGMGQEWSAFEAAAEQGVHDMGRFDVDYLKD
DSTLESGCPVHRARCSAP

mRNA from alignment at CM002457.1:287274..289130-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1304 ID=rna1304|Name=rna1304|organism=Nannochloropsis gaditana|type=mRNA|length=1857bp|location=Sequence derived from alignment at CM002457.1:287274..289130- (Nannochloropsis gaditana)
ATGAAGCGGAGGCTGCGTGGGAGCAGCCAAGATCCTCCTTATGCCTTGTC
TCGGAATGCCTCTGCCACCGCAGCCGTCGTGGTGGTGGCCCTCTCATGTT
TGTGGAGCACGACCCGGGCGTTCCACATGCCATCAACCTCTAGGCCGTTC
TCCCGGTCGCTTCATCGCAGCGTCGCTCGCATCAGACCGCAAGGTTCCAG
CCTGATGGCAAAGAGAGATGCACCGGGAGGCGGCGATGTTTTGGTCATTG
GAGGGGGCCTGGCGGGCTTGTCGACTGCACTGGAGCTTTCCCAACGCGGA
GCCAAGGTAGTGGTCGTGAGTAGGGACGAAGCTGAATCGGCCAGTATGGC
AGCGGGGGGCATGCTGGCTCCTCAGGCGGAACGCCTAGAAGCCGGTCCGT
ACCTGGATTTGTGCTTGCAAAGCCGCGACATGTACAGCGAGTGGGCCGCA
GATCTGGAGCAATGGTCGGGTGGGATCTCCACTGGGTTCGCCGCCGCAGG
GGGGTTTTTAGCACCTGCCTTCACGGGCGATCAGGTGGATGGTTGGGTGC
CCCCCCCGGGGGCAGGGCCGGCCTACCGTTTAGATGGGCCGCAAATCCGA
GGCATGGAGCCAGCCTTGTCGCCGCACGTGACCGGGGGCTGGTGGTACCC
CGAGGACATGCAAGTGGACGCCCGTCGTCTCTTTCGCGCACTCCGGGAGG
CGTGCCTGCGGGCGGGCGTCAGTGTCTTGGAGGGGTCCGAATGGGCGGTG
GAGGCCCTGGTCTTCCATCCCGCCTTGCCAGCCGTCCAGGCGGTCAAAAT
GAGCGACGGGCGCCGGCTTTCGTTCGCACAGGTCGTGGTTGCGAACGGTG
CGTGGATGAACCGCCTGTTGCCCGTGCCGGTGGGCCCTGTGAAAGGGCAA
ATGCTCTCATTGCGCCCGAAAAAGGGCGAACCCAACCCCTTGACCCGGGT
CATCTTCGCGGAGAATTGCTACTTGATTCCCAAGGCGGATGGCCGCCTCA
TCGTAGGCGCCACCGTGGAGGCAGGGCAGTGGGATCGGGGGGTAACGGCG
AAGGGTATCCACGACTTGACCCAACGGGCCTTGCAAATCTGCCCGGCGTT
GGGGAACTTGGAACTGGAAGAGACATGGGCCGGTCTGCGCCCTACCACCC
CCGACACCCTCCCTGTGCTGGGAAGCACGCCCTGGGAGAACCTCTTCGTG
GCTGGAGGGTATTGGCGGAACGGCGTCTTGCTGGCGCCCCGTACGGGCCA
GCTGGTGGCTGATTGTGTGGAGGGGAAGGTGGGTGCCGACGATGCGGCCC
TCCTTTCCCACTTTGCATGGAGCCGGTTTTTGCCTTCCCGAGTCGGAGAA
GCCCGGCAAGGAAGCAAAAAGTCAGCTGCGACCGTGGCCGCCGACGCGAC
AGTGGGGGATAAAAGGAGCGCTGAATCCATGTCTCTTTCGAAGCCGCCTC
GTGGAGCGACAAGTCCTGCGGCAGACACCAGCGCCGGGGGACCAACGCCG
TCTTCTCCTACCGCCCCCGCAGATACAGTCACTCACCATGACGACCCGTA
CGTGGACTATGCTCAGTTGAAGGCGGCGGGCAACGTAGAGGACACGGAGG
CGATCATTCGGGAGGCGCGGCGGGTGAACCGGGAGGGTCTGGTGGGGTAC
GGGCTGGGGGAGGACGCGGTGGGGAGGGAGACGGCGAGTAAGTTCAACGT
GCCGAGTGCGGGCATGGGCCAGGAATGGTCGGCATTTGAGGCGGCGGCGG
AGCAAGGAGTCCATGACATGGGCCGCTTTGACGTGGACTACTTGAAAGAC
GACTCTACACTTGAATCGGGATGCCCTGTCCACAGGGCCAGATGCAGTGC
ACCATGA

Coding sequence (CDS) from alignment at CM002457.1:287274..289130-

>rna1304 ID=rna1304|Name=rna1304|organism=Nannochloropsis gaditana|type=CDS|length=1857bp|location=Sequence derived from alignment at CM002457.1:287274..289130- (Nannochloropsis gaditana)
ATGAAGCGGAGGCTGCGTGGGAGCAGCCAAGATCCTCCTTATGCCTTGTC
TCGGAATGCCTCTGCCACCGCAGCCGTCGTGGTGGTGGCCCTCTCATGTT
TGTGGAGCACGACCCGGGCGTTCCACATGCCATCAACCTCTAGGCCGTTC
TCCCGGTCGCTTCATCGCAGCGTCGCTCGCATCAGACCGCAAGGTTCCAG
CCTGATGGCAAAGAGAGATGCACCGGGAGGCGGCGATGTTTTGGTCATTG
GAGGGGGCCTGGCGGGCTTGTCGACTGCACTGGAGCTTTCCCAACGCGGA
GCCAAGGTAGTGGTCGTGAGTAGGGACGAAGCTGAATCGGCCAGTATGGC
AGCGGGGGGCATGCTGGCTCCTCAGGCGGAACGCCTAGAAGCCGGTCCGT
ACCTGGATTTGTGCTTGCAAAGCCGCGACATGTACAGCGAGTGGGCCGCA
GATCTGGAGCAATGGTCGGGTGGGATCTCCACTGGGTTCGCCGCCGCAGG
GGGGTTTTTAGCACCTGCCTTCACGGGCGATCAGGTGGATGGTTGGGTGC
CCCCCCCGGGGGCAGGGCCGGCCTACCGTTTAGATGGGCCGCAAATCCGA
GGCATGGAGCCAGCCTTGTCGCCGCACGTGACCGGGGGCTGGTGGTACCC
CGAGGACATGCAAGTGGACGCCCGTCGTCTCTTTCGCGCACTCCGGGAGG
CGTGCCTGCGGGCGGGCGTCAGTGTCTTGGAGGGGTCCGAATGGGCGGTG
GAGGCCCTGGTCTTCCATCCCGCCTTGCCAGCCGTCCAGGCGGTCAAAAT
GAGCGACGGGCGCCGGCTTTCGTTCGCACAGGTCGTGGTTGCGAACGGTG
CGTGGATGAACCGCCTGTTGCCCGTGCCGGTGGGCCCTGTGAAAGGGCAA
ATGCTCTCATTGCGCCCGAAAAAGGGCGAACCCAACCCCTTGACCCGGGT
CATCTTCGCGGAGAATTGCTACTTGATTCCCAAGGCGGATGGCCGCCTCA
TCGTAGGCGCCACCGTGGAGGCAGGGCAGTGGGATCGGGGGGTAACGGCG
AAGGGTATCCACGACTTGACCCAACGGGCCTTGCAAATCTGCCCGGCGTT
GGGGAACTTGGAACTGGAAGAGACATGGGCCGGTCTGCGCCCTACCACCC
CCGACACCCTCCCTGTGCTGGGAAGCACGCCCTGGGAGAACCTCTTCGTG
GCTGGAGGGTATTGGCGGAACGGCGTCTTGCTGGCGCCCCGTACGGGCCA
GCTGGTGGCTGATTGTGTGGAGGGGAAGGTGGGTGCCGACGATGCGGCCC
TCCTTTCCCACTTTGCATGGAGCCGGTTTTTGCCTTCCCGAGTCGGAGAA
GCCCGGCAAGGAAGCAAAAAGTCAGCTGCGACCGTGGCCGCCGACGCGAC
AGTGGGGGATAAAAGGAGCGCTGAATCCATGTCTCTTTCGAAGCCGCCTC
GTGGAGCGACAAGTCCTGCGGCAGACACCAGCGCCGGGGGACCAACGCCG
TCTTCTCCTACCGCCCCCGCAGATACAGTCACTCACCATGACGACCCGTA
CGTGGACTATGCTCAGTTGAAGGCGGCGGGCAACGTAGAGGACACGGAGG
CGATCATTCGGGAGGCGCGGCGGGTGAACCGGGAGGGTCTGGTGGGGTAC
GGGCTGGGGGAGGACGCGGTGGGGAGGGAGACGGCGAGTAAGTTCAACGT
GCCGAGTGCGGGCATGGGCCAGGAATGGTCGGCATTTGAGGCGGCGGCGG
AGCAAGGAGTCCATGACATGGGCCGCTTTGACGTGGACTACTTGAAAGAC
GACTCTACACTTGAATCGGGATGCCCTGTCCACAGGGCCAGATGCAGTGC
ACCATGA

Synonyms

Publications