rna130, rna130 (mRNA) Nannochloropsis gaditana

Overview
Namerna130
Unique Namerna130
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2183
Alignment locationCM002455.1:344660..346498 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100013g94.9771.mrna
Orig protein idgnl|cribi|Naga_100013g94.9771
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:344660..346498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g94gene124Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna130rna130-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30483.1cds130Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna130 ID=rna130|Name=rna130|organism=Nannochloropsis gaditana|type=mRNA|length=2183bp
AGATGAAGCAGCCTGTAGGGCCTCTAGAACTACTTGAGGAAGGGGATGAA
GCTTGAAAGTCGATTCCATCTGGACGGTAGGAAAGAGCTCAGTGGCTGGT
ACGACAACTGTTGCTGTACGTCTATAGAAAGAGGAATTATTTCGTGAATC
AAAAACCGCACTGGTAGCAACCCTCAGGGCAACCGTGCCAACGACATATT
CAGGGTCGCACGCGTGCGCCTGCCTTTAGAAGGCAGATGGGGGGACGATG
TGCTCCTTGAGGCTCCCAGACTCGCCGCGCCTCTCGCCCTTGTTCTTCAA
CAGCACCCTGGGCCAGAGGGGGGAAAAACACCTTAGAAGTCCTTGACAAT
ATTATTGCCTTGCACATACTACGTCGTTACGCACATTTTCACGATCTGTT
GTACACAGGGTAGAGCAGGGCGATAGCCTTGCTGCATCCGCGCAGCGGGC
GGTGACCAACTATCTTCTTCACTCCCCATTTCCCAGCGCCAAGATACTTG
TCCATGCCCCCCCTCTCCTCCACGCCGTTGATCTTAATAATGTTTTTATG
CTATGGCTCCGCACCACGACGAGTTTTGGGTTTTAGAATTATTTGGAACT
CCCCCTTGCACTATGCCACACCACATTTGGGCGCGCGAACGTCAGGTTTT
CCTCCCAGCCAGACAGCGCTGTCGACGTGGAGCTGCTGCCCTCCGCTGGT
TCAGTCATCCCGCCGCTCACCCTTCCAGTCGTCCACCCTGCGTTTCGCCA
TTCCTGCTGCTTCGTTTAGCGCAGGGAAGGGTAATGAACGGAAAGTGAAG
GACCACAAAAGGAGGACACCGAAAAATAAACACGTCGACGAAGACGAAAC
CAATGACGTTCAAGAAATGACAGAGACAGAGCTGCTCAAAATAATGCAGA
GTGGAGAGGCAATGGATGCTGTATGGCAGCGAATGATGAGCCAAATGGAG
GGGATGGAGGCCTTGGATAGCGAGGATGATGAAGATGAGGAGGATTGGGA
GGAATTCGACAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGAAGGAGGAGGTCGCTGTGGGAAGGAGGGTCCACAGCTCC
TTTCAATCTCCCTTCCCTGAAGACAAGCCTCTTGGGACGATTCAAATTCG
CAACTCGCAGCGCACCATCGCTCTTGACCTAGACCTCTTGCACGCTCAAG
TCCGGACGATCCTTGAGATAGTCGGGAAATCCGATCACGACGTTTCTTTA
TGGCTGACGAACGATCGGAGCATTCGAGAGTACAATGACCGTTACCGAGG
CAAACGAACGGCCACAGATATACTGTCTTTCCCCTTCCACGAATACGAGG
CCCCGGGTATCCCGACCTCGGAGTCTTGGGCCCTGACGGGGGAGGTCAAG
GATTTGGGGGATATGATCGTTTCCGTCCCATACGTGCAGCGTCAGTGCCA
GCGGGATCAGGCAGATTGGTTGGAGAAAGGGGAGAATTTGTGGTCGGGCG
AGCGGGGGGCTTCGGGTGCGATGGCGCGGGTCTTCGGCGTGCAGGATCGT
CTTCCCTTTTTGGTCATTCATGGCGTCTTGCATCTGCTGGGCTTCGACCA
TGAGACGGACAAGGACTACAACGAGATGGTCAAGGAGGAGGATCGGGTGC
TCGCGGAGTTTAAAAAGAAGTTTGCGTCCACGGGTTTGTCGGAGGCGGCA
CCGGAAATGAACAGAGGCGACGCCGGAGGCCAACGAAGAGGGTTTCACAA
GCCGAACCGCACAATCAGTGGTACCATCTAGCGCTTTGAAGCGGGCAAAG
AGACCACGACCTGCACGGTCCACAGAAAGATAAGCATGAGCCATGGGTGA
ACCTGGAATTAGAAAAGTGAAGAAGACTGTACGTCGGGTGCCAGGGGCAG
AAGCATTTGAATTTACTCTCAAAACATGATGTAAAAAGACCCTCTCCTCC
GTTCTGCGTAATTAAACGCCGATAATGTACCATAAGAAATGAACAAGGAA
TTAACGAGTAAATTGATAGGCGTGAATCATGTGGGCCTTAGGCGGCTTTA
GGCTTGCCTTCTGACATTACGTTGGTTGGTGCTTAGAAAGGAGCTTGGCA
TAATCCCCAATTTTTAATCTGGCTGCAAGTCCTTCCACGCAAAACACTAG
TGATAGATTCCATGTCCCTAGCCCGCTACAGCT
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protein sequence of rna130

>rna130-protein ID=rna130-protein|Name=rna130|organism=Nannochloropsis gaditana|type=polypeptide|length=322bp
MTRWLSLFRYLKSLHYNHTFNFVFLLLVDQGEASIAFSCMMKTSRSEVGE
ITPEEDINQESKTLMDGPAMRPEAKDGIARVPASTASTVPAIPAGQAASA
HNCRVISSQNVGVNGQTSSTWQAYRQSRLSTLAKWIYILMISLFLVALYC
GDFSSQQRTHQVLPRITKKVALMLETYSQQLDALGLPRIDMTQFWNGLAD
KAPARFSVLQPLECPALARGTVMHAGDYIYACVEEGGNAGKECNPTFFHL
KDDGSLLLARGTTPKRAIRTIWKSKAGPVKHGKYVATYGENGALEVYLGE
KRIWRARKFFQPRVLRPWPLTK
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mRNA from alignment at CM002455.1:344660..346498+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna130 ID=rna130|Name=rna130|organism=Nannochloropsis gaditana|type=mRNA|length=1839bp|location=Sequence derived from alignment at CM002455.1:344660..346498+ (Nannochloropsis gaditana)
CGGCGCTATCCCTAAAAAGCTTGAAGCTACGGTCGATCCTAAGACCCAGA
CACTTAATCGCATTGACTTGGTTTTTAATTGTTCGCGGGGCAATGTCTTG
GGTTTGCGACAAAAAATGCGGTCAGACCGCGCGCAccattttcctctcct
tgcgaGGCACACGATGTCTTTCGCTTCTCATgacctcgctcctcctcctc
cctttctgttCTGAGACGGTATTGGATGGAACGCTGTGATAATGAATGAC
CGCAACTAATGCACAATATGTTTGTCCGAATACCATAAGGCGTCGATACC
ACACGTACGGTTGTCAATTCTTTTGACGCTGTAGGCGCATCACAAGGTGT
GAACAAGTCTCTTTGAGGAGGCCCATGCCTCTCTCTACTGTGATCCATGG
GCATGAACCGTCGCAAAATGTGCGAAATTAATCACTATTTTGTGATGACA
ACTGAGAAAATTTGTGGTAAATGACACGATGGCTCTCATTATTCAGGTAT
CTGAAATCGCTACATTACAATCATACATTCAATTTCGTCTTCTTGCTACT
CGTCGATCAAGGTGAGGCAAGCATCGCTTTCAGTTGCATGATGAAGACAA
GTCGGAGCGAGGTTGGTGAGATCACCCCCGAAGAGGATATCAACCAGGAA
AGCAAGACACTAATGGACGGCCCCGCGATGCGTCCTGAAGCGAAGGACGG
TATTGCCCGAGTCCCGGCCTCAACTGCCTCCACGGTACCCGCCATACCCG
CCGGTCAGGCCGCCTCTGCGCATAACTGTAGGGTAATTTCCAGCCAAAAT
GTCGGTGTGAATGGCCAGACATCCAGCACATGGCAGGCGTACCGACAGTC
GCGTCTCTCTACTTTAGCGAAGTGGATTTATATCTTGATGATATCCCTGT
TTTTGGTTGCGCTCTACTGCGGGGACTTTTCTTCCCAGCAGCGCACCCAT
CAGGTTTTACCTCGAATCACCAAAAAAGTGGCACTCATGCTGGAGACCTA
CTCGCAGCAATTGGACGCTCTTGGCTTACCGCGCATCGACATGACTCAAT
TCTGGAACGGACTGGCAGACAAGGCACCGGCGCGCTTTTCAGTGCTGCAA
CCACTTGAGTGTCCAGCACTGGCCCGAGGCACGGTTATGCACGCAGGAGA
CTACATCTATGCatgcgtggaagaaggaggaaatgctgGAAAGGAATGCA
ATCCTACATTCTTCCATCTGAAAGATGACGGCTCATTGCTTTTGGCGCGC
GGGACCACGCCGAAGAGAGCCATCCGCACGATCTGGAAGAGTAAAGCAGG
GCCGGTCAAGCACGGGAAGTATGTGGCTACGTATGGAGAGAATGGCGCGC
TGGAGGTCTActtgggagagaaaaggattTGGAGGGCTCGCAAGTTCTTC
CAGCCCCGAGTGCTGCGTCCATGGCCCTTGACCAAGTAGACAGGAGCGTC
TGGGTAGCGTGAGGGCGCATGGAGGGGTAACGAAGGTCAAGGCTGGAGAA
ATTCGGGACATGATTTGTGTTGTAAAACTTCTTGGGACCAATACGGACGC
CACAGGGACGATTACCTCTGGGGCGGCATTTTTACTTCAGGCGCAAGACG
ATGAACTTTTGTTGTATGGTATCCGGTTTGAGCAGTTGCGACGGGAGGGT
CAAATTAGGGTCACTTTTTTACGGAGGATACATTCGGAAAGATAGGATAA
GGAGATACCTAAAGCAAAGCTCGCGCAATTCAGCGGATTGAATTATGGGT
GTTACTCGCCTGTACACCGTCATTTTCGAAACGATAAATTACTTCCACAT
ACTCGTTCGATACAGAGTGTCGTCACAATTTATTTCACT
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Coding sequence (CDS) from alignment at CM002455.1:344660..346498+

>rna130 ID=rna130|Name=rna130|organism=Nannochloropsis gaditana|type=CDS|length=969bp|location=Sequence derived from alignment at CM002455.1:344660..346498+ (Nannochloropsis gaditana)
ATGACACGATGGCTCTCATTATTCAGGTATCTGAAATCGCTACATTACAA
TCATACATTCAATTTCGTCTTCTTGCTACTCGTCGATCAAGGTGAGGCAA
GCATCGCTTTCAGTTGCATGATGAAGACAAGTCGGAGCGAGGTTGGTGAG
ATCACCCCCGAAGAGGATATCAACCAGGAAAGCAAGACACTAATGGACGG
CCCCGCGATGCGTCCTGAAGCGAAGGACGGTATTGCCCGAGTCCCGGCCT
CAACTGCCTCCACGGTACCCGCCATACCCGCCGGTCAGGCCGCCTCTGCG
CATAACTGTAGGGTAATTTCCAGCCAAAATGTCGGTGTGAATGGCCAGAC
ATCCAGCACATGGCAGGCGTACCGACAGTCGCGTCTCTCTACTTTAGCGA
AGTGGATTTATATCTTGATGATATCCCTGTTTTTGGTTGCGCTCTACTGC
GGGGACTTTTCTTCCCAGCAGCGCACCCATCAGGTTTTACCTCGAATCAC
CAAAAAAGTGGCACTCATGCTGGAGACCTACTCGCAGCAATTGGACGCTC
TTGGCTTACCGCGCATCGACATGACTCAATTCTGGAACGGACTGGCAGAC
AAGGCACCGGCGCGCTTTTCAGTGCTGCAACCACTTGAGTGTCCAGCACT
GGCCCGAGGCACGGTTATGCACGCAGGAGACTACATCTATGCatgcgtgg
aagaaggaggaaatgctgGAAAGGAATGCAATCCTACATTCTTCCATCTG
AAAGATGACGGCTCATTGCTTTTGGCGCGCGGGACCACGCCGAAGAGAGC
CATCCGCACGATCTGGAAGAGTAAAGCAGGGCCGGTCAAGCACGGGAAGT
ATGTGGCTACGTATGGAGAGAATGGCGCGCTGGAGGTCTActtgggagag
aaaaggattTGGAGGGCTCGCAAGTTCTTCCAGCCCCGAGTGCTGCGTCC
ATGGCCCTTGACCAAGTAG
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Synonyms
Publications