rna1298, rna1298 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1298
Unique Name	rna1298
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1961
Alignment location	CM002457.1:272639..275288 +

Link to JBrowse

Properties


Property Name	Value
Product	nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30
Orig transcript id	gnl\|cribi\|Naga_100028g12.3283.mrna
Orig protein id	gnl\|cribi\|Naga_100028g12.3283
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:272639..275288 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100028g12	gene1252	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1298	rna1298-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29347.1	cds1296	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:272639..275288+
coding sequence from alignment at CM002457.1:272639..275288+

mRNA sequence

>rna1298 ID=rna1298|Name=rna1298|organism=Nannochloropsis gaditana|type=mRNA|length=1961bp
ATCCGAGGACACAACCTGCTCAGGGGCACAGCACGTTTTTGGTTTGTTGC
CCGCCCGTGGGCACATGGTGGAGCCCCGATCTTGATCCCCGCCAAGTCAG
CGAGGCTGGGGTGGCATGGTCATTTCTTTGGAGGTGTTTGAAGTCACATC
TAATCACGTCGAAACGACCACACTTTCACGGCATTCACAGGTTTAAAGCA
TGCGAGGACGAGGCCTGGACGTGGGAGTGTTGGCGGTGTTTTGTTTGTGC
CTAGGGGCTGTGCGGGCATTTGTTGTCCCTGTGACGCCCGGACTTCACCA
TCTCAGCCGGAGCAGCAGCATAGGACCCAGCACTTGTCTTCCTTTACCTT
CCTGCGTTCCACCTGCCCGTACATCATGTGTATCTCGCCGGTGGGTGAAG
ACGCAGGCCAAGGACGAGGAGATTGCAAACGCGAAAGAGCACCGTTCCTT
TGCGCCTGTCACCTCTTTGGAGACCCTCTCTGAGCATGACGCGGCCGACA
CACCCCGTTCGCTACAGGAGCGGGTGCGTTTGTTCGCAGCCACGAAGGGA
GTGGATTCTCGCCAGCTGAATTTTTTGCTGAACGTGGGCCTGATATCCGC
TGTCGCGGCGCTCGTGTTGGCGAAGGTGGTCACCGTGGATCTGGACGTGT
GGCGCGGCTGGACTCCCGCCGAAATCTTCACACGCATTCCCCTAGACAAC
TGGGACGGGTACATGAACGTGCTGAGCCTGCATCCTGTCTTCGTCAAGGC
CGTGACCAGCGGCTCCGTCTACACCCTGGGGGATGGGGTCGCCCAGCTCT
ACGAGGGCAAGACGTTGGGGGAAATCGACCGCGGCCGCGTGGCTCGTTCC
GGTATCGCGGGCTTCGTCGGGCACGGGCCCCTCTCTCACTGGTGGTACGG
AGTGTCGGAGGATTTTTTCGGGTGGCTGGGCTGGGAAGGATGGTGGACGA
CCTTCCCGAAAATCACCGTGGACCAGCTCGTGTGGTCCCCGATCTGGAAC
GGGTGCTACATCTTCCTCCTGGGGGCCATGAAACGGGAGGCGCTGGGCGA
GATCGTGAACACGGTCAAATCTACCTCCTTCTCGCTCATCACCTCCGGTC
TGAAGCTCTGGCCGTTGGCGCATGTGGTCACCTACGGCGTCATTCCCGTG
GAGAACCGGTTGCTGTGGGTAGACCTGGTGGAGATCTTGTGGGTGACGAT
TTTGTCGCGGGAGGCGGCCAACGCGGACGCGGAGAAAGCGGAGGCGATAG
GAGACGTGGCGGTAGAGGAAGCCTCCTCCAAGACGTTGGCCGTGGTGGAC
AGTGAGACGATGCAGGCGCCGAGTGCCCGTGCCGCGGGTGACGACATGGA
GCCTGTGATTTTCATGCCGCTCGCGTCGAATGTCTCTGACCTGGAAACTG
AAGACGGCCAACTACGAGACCATGCAGAACACCACCCCGAGCAGGAGCAA
CAGAGGGCAGTGTCTGTGCACAGAGAGGATGAGTTCGTGTAAGAGGGGGA
GGGGGGGTGCATCGGGATCTTCACGTCCACTGTGTGTGGAGCGTAAGGAT
AGCCTGGTCGCATTTTTGTATAGTCTGATGATATTCTTTAGGGCGGCAAG
AGCGTAGACATATGTAGATAGCATGAAACCTCCGGTAAGCCTCTTTCTTG
AAGGAGCTGATACCGACAGGGGTAGGCCGTGAGAACCAGCCAGGGACCAC
TCTGTCCTCCTATCCTTTTGCGCAATGTGAAAGGCAGTCGTGGTAGGTAG
AAGGAGGCGGAGAGTGTAATATTTTGTTGGTGTGGTATGTGAGGCCGTAA
CAAATTTTAAATTGCATAGGAAGCGACCCTCGGGGTCCAACTTCGCGCGT
AATGGCTGTCTCGATTTAAAGTCGACCGGGAGGTTTGACACACTTAGCGT
CGCGTAAGAGTTAATTAAAAAAATTAAGGAAAAAATAACGGGCGACATAA
AAATATCATCG

protein sequence of rna1298

>rna1298-protein ID=rna1298-protein|Name=rna1298|organism=Nannochloropsis gaditana|type=polypeptide|length=598bp
MGCKMMAQAFIVCLLTLATSHLLPCTAFMRPFPQPSHAARGLGGGRPRQG
SMVMQESSSSKKGWPVGRALRTFLSFNGPRFLSGRRKKKTSGGVGLATAT
TVTPQLGADLPVGHGIVLVTGATGGVGRRVVSLLLEKGIRVRALARNEQK
ALAMLNGGQKPEPGALLEIVNADIRDPAALTPELMEGVTAVIGCTAAIVQ
PKSGDSEDRAKYYQGIVFYEPETLDSPEETDFVGVKNVLAAASKYADVKG
CKKLYNCAPAFIDRWQDFASLDDVVMGGTSDSKFTLVPGAGEAGNEDSPS
RIAGVFEGMVTTERGFASGGFTSVRTRNLEPPLDLTGYEGLRLRVLGDGN
TYKIILRDSDQWDGPSWSTMVPTQAGEWADLDVPFTSLIPVARTRSIPAD
QRQAFRLDQIFAIQIMLSKFAYDGEVNPTYKDGPFKLVIQSIEAYMGPSA
PRTPRFVHISSAGVERPGRPGVVLEEEPPAVRMNDMLGGILTYKLKGEEA
IRASGLPYTIIRPCALTEEPANMPLEVDVGDTIKGKVSRDDVARLAVYAL
ACPEATDLTFEVKSSLAFSQQWTAEDAARAPVTDMTQVFAQVKSLSQK

mRNA from alignment at CM002457.1:272639..275288+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1298 ID=rna1298|Name=rna1298|organism=Nannochloropsis gaditana|type=mRNA|length=2650bp|location=Sequence derived from alignment at CM002457.1:272639..275288+ (Nannochloropsis gaditana)
ACAGCCCGACGGACTGTCTCGTAATTTCCTCCCGAAAAAGAACATATCGC
TACGCGTTCTAGTCGAAAAACGCGGCAAGCTGCCCATGGCCCTGTGCCCT
TGACGAACCGAGGTGCGCCTTGTTGTTGGAATGGACGAATGTTTGTTACG
AGATCTTTTTCTAATTTGAGTCCATATTCACGCACAACACGGTACCAGGC
TCTGCCGCATCAATTTTACCTCCCCGTACCGTCAGGAGCCACTTCCTCAG
GCTCCATGGGGTGCAAAATGATGGCGCAAGCTTTCATCGTCTGCCTTCTC
ACCTTGGCAACGTCCCATTTGCTACCATGCACTGCATTTATGCGCCCTTT
TCCACAGCCGTCGCATGCTGCACGGGGTTTGGGTGGGGGCCGGCCACGTC
AAGGCAGTATGGTCATGCAAGAAAGCTCGTCCTCCAAAAAAGGATGGGTA
AGTGGGGTGTACATGCGTTCTTACGACGGCGTATCACGTGCGTGTCCTTC
AAGCATACCGTACAGGCGTGTATGGACTTGTGTAGCGTTTACACCGGACG
ATATGTTGTCCCAGAGCGTGCCACCAGGCCCGTCGCATTGGTACGCCCCT
CACTGTAAACCCCCACGCCTTGCATCTTCGCACCACAGCCCGTGGGCCGT
GCCCTCCGGACATTTCTCTCCTTCAACGGCCCACGTTTCCTGAGCGGGCg
acggaagaagaagacgagcGGGGGAGTTGGACTTGCCACGGCTACGACGG
TCACCCCGCAATTAGGCGCTGATTTGCCCGTAGGGCACGGGATCGTTCTG
GTCACGGGAGCCACGGGTGGGGTCGGCCGCCGCGTGGTCAGCCTTCTGTT
GGAAAAGGGGATACGTGTCCGGGCCCTGGCCCGGAATGAACAGAAGGCCT
TGGCCATGTTGAATGGAGGGCAAAAGCCAGAGCCGGGGGCTTTGTTAGAA
ATTGTCAATGCCGACATCCGCGACCCCGCAGCCCTGACGCCCGAGTTaat
ggagggcgtgaccGCCGTAATCGGATGCACGGCGGCAATCGTGCAACCCA
AGTCCGGCGACTCGGAGGACCGGGCGAAGTACTACCAAGGCATTGTCTTC
TACGAACCGGAGACGTTGGACTCGCCCGAGGAGACCGATTTTGTCGGCGT
GAAGAAtgtcttggccgccgccagcaagTACGCGGATGTGAAGGGTTGCA
AGAAATTGTACAATTGTGCGCCGGCATTCATAGACCGCTGGCAAGACTTC
GCGTCCCTCGACGACGTGGTGATGGGGGGCACCTCGGATTCGAAATTCAC
TTTGGTaccgggggcgggagaggccGGGAACGAGGACAGCCCGAGCCGAA
TCGCTGGGGTGTTTGAAGGGATGGTGACTACTGAGAGGGGCTTTGCCAGC
GGGGGGTTCACGTCCGTGCGGACCCGGAATTTGGAGCCGCCCTTGGATTT
GACGGGCTATGAGGGCCTGCGCCTGCGAGTCTTGGGGGACGGGAATACCT
ATAAGATCATTCTGCGCGACTCAGACCAGTGGGACGGACCTTCCTGGAGC
ACCATGGTGCCCACTCAGGCGGGGGAATGGGCAGATTTGGACGTGCCGTT
CACGTCCTTGATACCTGTGGCCCGGACACGGAGCATCCCGGCGGACCAAC
GTCAAGCCTTTCGCTTGGATCAAATCTTTGCCATCCAGATCATGCTGAGT
AAGTTTGCCTACGACGGAGAGGTGAACCCGACGTACAAGGACGGACCTTT
CAAGCTCGTCATCCAGTCGATCGAGGCCTACATGGGCCCCAGTGCCCCTC
GGACTCCTCGATTCGTCCACATCTCctcggcgggggtggagcgACCCGGG
CGGCCGGGGGtcgtcttggaggaggaaccgCCCGCCGTGCGCATGAATGA
CATGCTGGGTGGGATCCTCACCTACAAGCtcaagggggaagaggcgatTC
GCGCCAGTGGTCTGCCGTACACGATCATTCGGCCTTGCGCCCTGACCGAA
GAGCCGGCCAACATGCccttggaggtggacgtAGGGGATACCATCAAAGG
GAAGGTGAGCCGTGATGACGTGGCACGTCTGGCGGTGTACGCCTTGGCGT
GTCCGGAGGCGACCGATTTGACGTTCGAGGTGAAGAGTTCCCTGGCTTTT
TCGCAGCAGTGGACGGCGGAAGATGCGGCCCGGGCCCCTGTGACGGACAT
GACTCAAGTGTTTGCTCAAGTCAAAAGCCTGAGCCAAAAATAGCTTGGGG
AGGCACGTTTGGTTCGGCATACACACACAGGACGGTTTTTTATTTTTTGA
TCGAGTAGCACTGGGCGTATTTCGTTTGACCGTCCCCGAAGATGTTTGAC
TAAGGCGCGGCGACAAAACTGTCATGTATGCGTTCGGGCAAAAGCCCGCC
TCAGTACGGCTTTTCCCACCTATCTTTTTCTTTACAGTTCGCTTTTAATG
ACTTATACACATGTGTACTGGCACCATTTTGGCGCGACAAGACAGTGTCT
CATGACTTGGAGCTTCCGCAAGTTTGCTTTTACTCGCTTTCATTCGTCTC
CCTGTTCCTCATTGCGTAGAAAAGTTGACGTATTCGTGCACAGCTGTTCC
CTTGATATTCTGGAACCTACGGCCcccttctgtccctcctccgatTATCT

Coding sequence (CDS) from alignment at CM002457.1:272639..275288+

>rna1298 ID=rna1298|Name=rna1298|organism=Nannochloropsis gaditana|type=CDS|length=3594bp|location=Sequence derived from alignment at CM002457.1:272639..275288+ (Nannochloropsis gaditana)
ATGGGGTGCAAAATGATGGCGCAAGCTTTCATCGTCTGCCTTCTCACCTT
GGCAACGTCCCATTTGCTACCATGCACTGCATTTATGCGCCCTTTTCCAC
AGCCGTCGCATGCTGCACGGGGTTTGGGTGGGGGCCGGCCACGTCAAGGC
AGTATGGTCATGCAAGAAAGCTCGTCCTCCAAAAAAGGATGGCCCGTGGG
CCGTGCCCTCCGGACATTTCTCTCCTTCAACGGCCCACGTTTCCTGAGCG
GGCgacggaagaagaagacgagcGGGGGAGTTGGACTTGCCACGGCTACG
ACGGTCACCCCGCAATTAGGCGCTGATTTGCCCGTAGGGCACGGGATCGT
TCTGGTCACGGGAGCCACGGGTGGGGTCGGCCGCCGCGTGGTCAGCCTTC
TGTTGGAAAAGGGGATACGTGTCCGGGCCCTGGCCCGGAATGAACAGAAG
GCCTTGGCCATGTTGAATGGAGGGCAAAAGCCAGAGCCGGGGGCTTTGTT
AGAAATTGTCAATGCCGACATCCGCGACCCCGCAGCCCTGACGCCCGAGT
TaatggagggcgtgaccGCCGTAATCGGATGCACGGCGGCAATCGTGCAA
CCCAAGTCCGGCGACTCGGAGGACCGGGCGAAGTACTACCAAGGCATTGT
CTTCTACGAACCGGAGACGTTGGACTCGCCCGAGGAGACCGATTTTGTCG
GCGTGAAGAAtgtcttggccgccgccagcaagTACGCGGATGTGAAGGGT
TGCAAGAAATTGTACAATTGTGCGCCGGCATTCATAGACCGCTGGCAAGA
CTTCGCGTCCCTCGACGACGTGGTGATGGGGGGCACCTCGGATTCGAAAT
TCACTTTGGTaccgggggcgggagaggccGGGAACGAGGACAGCCCGAGC
CGAATCGCTGGGGTGTTTGAAGGGATGGTGACTACTGAGAGGGGCTTTGC
CAGCGGGGGGTTCACGTCCGTGCGGACCCGGAATTTGGAGCCGCCCTTGG
ATTTGACGGGCTATGAGGGCCTGCGCCTGCGAGTCTTGGGGGACGGGAAT
ACCTATAAGATCATTCTGCGCGACTCAGACCAGTGGGACGGACCTTCCTG
GAGCACCATGGTGCCCACTCAGGCGGGGGAATGGGCAGATTTGGACGTGC
CGTTCACGTCCTTGATACCTGTGGCCCGGACACGGAGCATCCCGGCGGAC
CAACGTCAAGCCTTTCGCTTGGATCAAATCTTTGCCATCCAGATCATGCT
GAGTAAGTTTGCCTACGACGGAGAGGTGAACCCGACGTACAAGGACGGAC
CTTTCAAGCTCGTCATCCAGTCGATCGAGGCCTACATGGGCCCCAGTGCC
CCTCGGACTCCTCGATTCGTCCACATCTCctcggcgggggtggagcgACC
CGGGCGGCCGGGGGtcgtcttggaggaggaaccgCCCGCCGTGCGCATGA
ATGACATGCTGGGTGGGATCCTCACCTACAAGCtcaagggggaagaggcg
atTCGCGCCAGTGGTCTGCCGTACACGATCATTCGGCCTTGCGCCCTGAC
CGAAGAGCCGGCCAACATGCccttggaggtggacgtAGGGGATACCATCA
AAGGGAAGGTGAGCCGTGATGACGTGGCACGTCTGGCGGTGTACGCCTTG
GCGTGTCCGGAGGCGACCGATTTGACGTTCGAGGTGAAGAGTTCCCTGGC
TTTTTCGCAGCAGTGGACGGCGGAAGATGCGGCCCGGGCCCCTGTGACGG
ACATGACTCAAGTGTTTGCTCAAGTCAAAAGCCTGAGCCAAAAATAGATG
GGGTGCAAAATGATGGCGCAAGCTTTCATCGTCTGCCTTCTCACCTTGGC
AACGTCCCATTTGCTACCATGCACTGCATTTATGCGCCCTTTTCCACAGC
CGTCGCATGCTGCACGGGGTTTGGGTGGGGGCCGGCCACGTCAAGGCAGT
ATGGTCATGCAAGAAAGCTCGTCCTCCAAAAAAGGATGGCCCGTGGGCCG
TGCCCTCCGGACATTTCTCTCCTTCAACGGCCCACGTTTCCTGAGCGGGC
gacggaagaagaagacgagcGGGGGAGTTGGACTTGCCACGGCTACGACG
GTCACCCCGCAATTAGGCGCTGATTTGCCCGTAGGGCACGGGATCGTTCT
GGTCACGGGAGCCACGGGTGGGGTCGGCCGCCGCGTGGTCAGCCTTCTGT
TGGAAAAGGGGATACGTGTCCGGGCCCTGGCCCGGAATGAACAGAAGGCC
TTGGCCATGTTGAATGGAGGGCAAAAGCCAGAGCCGGGGGCTTTGTTAGA
AATTGTCAATGCCGACATCCGCGACCCCGCAGCCCTGACGCCCGAGTTaa
tggagggcgtgaccGCCGTAATCGGATGCACGGCGGCAATCGTGCAACCC
AAGTCCGGCGACTCGGAGGACCGGGCGAAGTACTACCAAGGCATTGTCTT
CTACGAACCGGAGACGTTGGACTCGCCCGAGGAGACCGATTTTGTCGGCG
TGAAGAAtgtcttggccgccgccagcaagTACGCGGATGTGAAGGGTTGC
AAGAAATTGTACAATTGTGCGCCGGCATTCATAGACCGCTGGCAAGACTT
CGCGTCCCTCGACGACGTGGTGATGGGGGGCACCTCGGATTCGAAATTCA
CTTTGGTaccgggggcgggagaggccGGGAACGAGGACAGCCCGAGCCGA
ATCGCTGGGGTGTTTGAAGGGATGGTGACTACTGAGAGGGGCTTTGCCAG
CGGGGGGTTCACGTCCGTGCGGACCCGGAATTTGGAGCCGCCCTTGGATT
TGACGGGCTATGAGGGCCTGCGCCTGCGAGTCTTGGGGGACGGGAATACC
TATAAGATCATTCTGCGCGACTCAGACCAGTGGGACGGACCTTCCTGGAG
CACCATGGTGCCCACTCAGGCGGGGGAATGGGCAGATTTGGACGTGCCGT
TCACGTCCTTGATACCTGTGGCCCGGACACGGAGCATCCCGGCGGACCAA
CGTCAAGCCTTTCGCTTGGATCAAATCTTTGCCATCCAGATCATGCTGAG
TAAGTTTGCCTACGACGGAGAGGTGAACCCGACGTACAAGGACGGACCTT
TCAAGCTCGTCATCCAGTCGATCGAGGCCTACATGGGCCCCAGTGCCCCT
CGGACTCCTCGATTCGTCCACATCTCctcggcgggggtggagcgACCCGG
GCGGCCGGGGGtcgtcttggaggaggaaccgCCCGCCGTGCGCATGAATG
ACATGCTGGGTGGGATCCTCACCTACAAGCtcaagggggaagaggcgatT
CGCGCCAGTGGTCTGCCGTACACGATCATTCGGCCTTGCGCCCTGACCGA
AGAGCCGGCCAACATGCccttggaggtggacgtAGGGGATACCATCAAAG
GGAAGGTGAGCCGTGATGACGTGGCACGTCTGGCGGTGTACGCCTTGGCG
TGTCCGGAGGCGACCGATTTGACGTTCGAGGTGAAGAGTTCCCTGGCTTT
TTCGCAGCAGTGGACGGCGGAAGATGCGGCCCGGGCCCCTGTGACGGACA
TGACTCAAGTGTTTGCTCAAGTCAAAAGCCTGAGCCAAAAATAG

Synonyms

Publications