rna1293, rna1293 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1293
Unique Name	rna1293
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1192
Alignment location	CM002457.1:262307..262800 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100028g7.3300.mrna
Orig protein id	gnl\|cribi\|Naga_100028g7.3300
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:262307..262800 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100028g7	gene1247	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29364.1	cds1291	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1293	rna1293-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:262307..262800-
coding sequence from alignment at CM002457.1:262307..262800-

mRNA sequence

>rna1293 ID=rna1293|Name=rna1293|organism=Nannochloropsis gaditana|type=mRNA|length=1192bp
TGTGCGCGTTTCCATCCCAGAAACATTAGTGTGATCATATGTATTCTACG
GTAATCACATTCGAGTATTGCTGAGGACTGATTTCGAGCGTTCATGTTTC
GGCAAAAATGTTTTCTTGTCATGCAGTCTCACGCTGGGTCGAACCAAACA
TCTATTTCGACAGAAAATGACCACACACACGAGAAGAGACGCTCATTTGT
TGAGGATGGCGGCCGTCCTTCTTCTACTCTTTGGCGGCAGCCAGGCGTTT
TTCACGCCTGCTCGTCAGAGTTTGCGTCCTGTGATTCGACGATCAAGTCG
CAGTCGGGGAGCGCTGTCGGCTGTGGACGCGAACGACCTTTTTCAAGGCT
ACATGGGGCTTATCCACACACACCCTTTGATTACGAAATGTGCAACAAGT
GCTATGATTGTACCATTAGGTGATCTCTCGGCTCAAGCAATCGAGACATA
CAAGGCCAAGCAGACCGGGGCAAAAGGAAACGACGAGGAAGAGGACTTAG
GAATCGACTGGAAGCGCGTGCTGCGCTTCCTCATTTTCGGAGCGACACTG
CAGCCCATTTGGAACCATTACTACTTCCAGTGGTTCGACCATCTGATTCC
CCCGCCCTCCGACCCCATCAGCCTGACGAACGTGCTCAAGGTTGCCCTCG
ATCAAGGTATCCAAGCCCCGATCTTCACAGTGGTCATTTTCGCCTATTTG
GACTTGTTAGAAGGGAAAAACCTGGAGGAAACTAAGGCACAAATCAAGCG
GGATTTCTGGCCGTGCATTACAACCAACTGGTGGGTATGGATTCCCATTA
CTTGCGCGAATTATGCCTTTGTCCCCCCCGACCTCAGGGTCTTGTTCGTG
AACGTCGCCTTCCTGGGGTGGTGTGTCTTTTTGTCCCTGCTGGTCAATAA
AAAGGATGGAGAGCCTACGTCACAAACAAGGCCATCGGAATCGTAAGATT
GCTGTGAGGGATGTATTTTACTTTTTCGTGCAGGGGTGTACAAGTAGAGG
TGTTCGTGTGCGTGTCTTGGAATATAACCGAAACAAGCGACCATCAAGGG
TCGGCGCGCGCCGCCGAGTGACACATACAAAGGTTGATTTATTCAAATTG
TCAGAGTAAGCTTAGCTATGGCGTTGGCAGATGGTGATCCGAAGACGGGG
TCACGGTAGCAAAAAAAGAAGAAAAAATCTTGGCGATTGACC

protein sequence of rna1293

>rna1293-protein ID=rna1293-protein|Name=rna1293|organism=Nannochloropsis gaditana|type=polypeptide|length=99bp
MAPASAIAVLDRTTLGQKAVLYREPIDSACLKDKHQNWRGDAHIPVPLLH
EVKDTLSTSTDLPKAMTQPPMIEWPCLRTANKGRLQKRLTCVRRPKWRA

mRNA from alignment at CM002457.1:262307..262800-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1293 ID=rna1293|Name=rna1293|organism=Nannochloropsis gaditana|type=mRNA|length=494bp|location=Sequence derived from alignment at CM002457.1:262307..262800- (Nannochloropsis gaditana)
TCACGAATTTCTCAGGAGATCCACCATGGCCCCAGCTAGTGCTATTGCTG
TATTAGATAGAACGACCCTTGGACAGAAGGCCGTCTTGTACCGTGAACCT
ATCGACTCTGCCTGTTTGAAGGACAAGCACCAAAATTGGCGCGGTGACGC
GCACATTCCCGTGCCCCTCCTGCATGAGGTGAAGGACACTCTATCCACGT
CAACAGACTTGCCCAAGGCTATGACTCAGCCGCCTATGATTGAATGGCCG
TGTCTTCGCACTGCAAATAAAGGCAGACTACAAAAACGACTTACTTGTGT
GCGAAGGCCAAAGTGGAGAGCATGAGCGCCTTCACTAGTGCGTACTATGT
GCTACCTGGGAGATCGCGTGCTTCTCGAGCTTAGCCTCGAGCTTGACCAG
ACCTACAATGCCCGTCTGGTCCCCTATATTTTGTGATGCATCGATCCCCA
TTCCCATCACTCACCACTCCCCGAGCCATTCCGAGTTTCAAACA

Coding sequence (CDS) from alignment at CM002457.1:262307..262800-

>rna1293 ID=rna1293|Name=rna1293|organism=Nannochloropsis gaditana|type=CDS|length=300bp|location=Sequence derived from alignment at CM002457.1:262307..262800- (Nannochloropsis gaditana)
ATGGCCCCAGCTAGTGCTATTGCTGTATTAGATAGAACGACCCTTGGACA
GAAGGCCGTCTTGTACCGTGAACCTATCGACTCTGCCTGTTTGAAGGACA
AGCACCAAAATTGGCGCGGTGACGCGCACATTCCCGTGCCCCTCCTGCAT
GAGGTGAAGGACACTCTATCCACGTCAACAGACTTGCCCAAGGCTATGAC
TCAGCCGCCTATGATTGAATGGCCGTGTCTTCGCACTGCAAATAAAGGCA
GACTACAAAAACGACTTACTTGTGTGCGAAGGCCAAAGTGGAGAGCATGA

Synonyms

Publications