rna1287, rna1287 (mRNA) Nannochloropsis gaditana

Overview
Namerna1287
Unique Namerna1287
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1062
Alignment locationCM002457.1:242493..243751 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100042g2.5649.mrna
Orig protein idgnl|cribi|Naga_100042g2.5649
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:242493..243751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100042g2gene1241Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29402.1cds1285Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1287rna1287-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1287 ID=rna1287|Name=rna1287|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp
TGCACACAGGCACATCCCTTGAGTGGAGCCAGACGTGCAGCCTCGTCATC
GAACACGTCGAGGTCGAGAACCCCTGCCAATTTTGGGGCTCCCCCGATTG
GCTACTTCTTTTCGACGTCTCTTTTCTTCTTTTCCCCTCAGTGAAGACGC
CTTCTGTGGTTCCAAGTTTGGACAACTATGGGAACTCCAGGCAAGCTTAT
TGGCTCCGTTATCAGCCTTGTTTCGAACAAGGATATTCGGTACGAAGGTG
TCCTGTACGCAATTGACCAAGAAAAATCCAGCGTGACGCTTCAGTCCGTG
AAGTGCTTCGGAACTGAAGGCCGCACGGGCGCAGGACAAGAATACCTCCC
CGACGATAAAGTGTACGATTACATCCTGTTCGAGGCTTCGGATATCAAAG
ATTTGCACGTGCATGAAGCAGCCTCCGCTCCGGCCCCTGCCCCAAGTCCC
GCCAAGGACGTGCCGTCATCGACTCCGGCGCCGACACAGCAACCGTCGCA
GCAGCAACAACCCTTGACAAAGTCGGCTCCCCCCCAGCGACAACAGCAGC
AGCAAGCCCGCCCGGCGGCAGGAGGGCGGGGCGGCGCCTCGAGAGGGGGA
CGAGGAAGCTACGGGGGGGGCCGTGGGGGGGTGCGAGGTCGGGGGGGAAG
GGAGGGCGGAGGGGCCTTACCGGGCACTGGAGGGCATTTACTGGGTCGAC
GGGGCAAGACAGAGGGTGGGGCGTCGGGGGGACCGGAAAAGGGCCAAGGG
GAGTTTGACTTCGAGAGTGCGTTGCAAGGCTTCAACAAGGAGGAGGAGAT
GGCGAAGCTGAGCGTGAAGGAGGAGGCAGGCGGGGAGGGTGGGGCCGTGG
GCTCGGAGGGAACGGGGGGGGCAGGCGGGGGAGGGAACGATCCCGGAGGT
GAAGAAGTATGACAAGTCCTCGTTTTTCGACGATTTGAGCACGGGGCCAG
GGGCGGGGGGACGCCCGTCCATGGCGGAGGAGCGGAAGACCAATATGGAC
ACCTTTGGCGTCGCTGCCTTACACAACCCACAGCACCGGCGGTATGGAGG
GCGCGGGGGGGG
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protein sequence of rna1287

>rna1287-protein ID=rna1287-protein|Name=rna1287|organism=Nannochloropsis gaditana|type=polypeptide|length=205bp
MSFPLVLPSLFISPCPRVPPWLPSHSLSRRFFPHPTLSSQSLVPFPPPLS
PLDPHASYHSLPIETIFPSPPSPSFSFIPRSVSSGASLNFPLGLSDTLPP
HPAASPPPTRSPLFLRPPLSSSPSPPPVLSSFTRCFLRLTFFALNPSSPR
WLLPSSPFRLPPLLPSLLPVPSSPKPLSPSSLLPPPSFLPLPALKNLAGC
LSSSN
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mRNA from alignment at CM002457.1:242493..243751-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1287 ID=rna1287|Name=rna1287|organism=Nannochloropsis gaditana|type=mRNA|length=1259bp|location=Sequence derived from alignment at CM002457.1:242493..243751- (Nannochloropsis gaditana)
ATCGAGCTCCTCGAGAAGGTACAGCGGTACGTGTCCAAGGCTCGGGCTCA
GGGGGTCTCGGAGGAGAGCTTGGTCATCACCCTTGATACCCTGGGGGTCT
TTGCCTGCTCGTGAGGCAAAAGAAAGGCAGGGAAGGAAGGAGGGAGGGAG
GGAGGGAGGGGTCCTCATGAGGAAGGCGTGGTGCGGCTGGGAGGGCGGAA
GAAGGTTGGATGATCGCCATGGAGTCGGAGTCGGAGGCAGGACGTATGTA
AGATATTGTAGGATAGGGCACGATCCGATCTTCTCGCCCTGGCGGTGACG
TAGTAAGAGTGGGCGAGGGGAGGGGAGGGAGAGGGCATGCGGTGGTGACG
TGCGGAGCGAGGGGCGTCGACAAAACGTGTATAGAATGGAAGGGAGGGAG
GGTGGGTGGGAGGGAGGGAGGGAGGGAGGGAGGGGAAAGGAGAGCCTTGT
GTGTGGATTGTGGGTGCGAAGGGGGAAAGAAATTGCGCGCTGCTTCGCCT
CACCAAGGAACCGGTGAGAAGGCACACGCTGGCCACCTCGCGATCCCCGC
AAATGGCCACCCACCATGAGCTTTCCTCTCGTCCTCCCTTCGCTTTTTAT
CTCTCCTTGCCCACGCGTTCCTCCTTGGCTACCCAGTCACTCCCTCTCCC
GGCGCTTCTTCCCTCATCCAACTCTCTCTTCCCAGAGTCTTGTGCCTTTT
CCTCCCCCCCTTTCCCCTCTGGATCCCCACGCTTCCTACCATAGCCTCCC
TATCGAAACCATTTTCCCTTCCCCCCCTTCCCCCTCGTTCTCTTTTATCC
CTCGCTCTGTCTCCTCTGGCGCCTCCCTGAATTTCCCACTTGGTTTGTCA
GATACGTTACCTCCTCACCCCGCTGCTTCCCCCCCTCCCACCCGCAGCCC
TCTCTTCCTCCGACCCCCTCTCTCTTCCTCCCCCTCTCCCCCACCTGTCC
TTTCTTCCTTTACACGGTGTTTCCTCCGACTGACTTTCTTCGCCCTAAAC
CCCAGCTCTCCCAGGTGGCTCTTGCCATCTTCCCCCTTCAGGCTTCCTCC
CCTCCTTCCCTCCCTCCTTCCCGTTCCATCATCCCCCAAGCCCCTTTCTC
CCTCCTCCCTCCTCCCTCCTCCTTCCTTCCTCCCTCTCCCAGCACTGAAA
AATTTGGCCGGGTGCTTATCCTCGTCAAATTAAGGCCCGCTCCCTGCTGA
CCCCATCCCTTCAGCTCATCCCGCCTACCCTTCGTCTCCTCCACCCCTGC
CGATCCTCC
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Coding sequence (CDS) from alignment at CM002457.1:242493..243751-

>rna1287 ID=rna1287|Name=rna1287|organism=Nannochloropsis gaditana|type=CDS|length=618bp|location=Sequence derived from alignment at CM002457.1:242493..243751- (Nannochloropsis gaditana)
ATGAGCTTTCCTCTCGTCCTCCCTTCGCTTTTTATCTCTCCTTGCCCACG
CGTTCCTCCTTGGCTACCCAGTCACTCCCTCTCCCGGCGCTTCTTCCCTC
ATCCAACTCTCTCTTCCCAGAGTCTTGTGCCTTTTCCTCCCCCCCTTTCC
CCTCTGGATCCCCACGCTTCCTACCATAGCCTCCCTATCGAAACCATTTT
CCCTTCCCCCCCTTCCCCCTCGTTCTCTTTTATCCCTCGCTCTGTCTCCT
CTGGCGCCTCCCTGAATTTCCCACTTGGTTTGTCAGATACGTTACCTCCT
CACCCCGCTGCTTCCCCCCCTCCCACCCGCAGCCCTCTCTTCCTCCGACC
CCCTCTCTCTTCCTCCCCCTCTCCCCCACCTGTCCTTTCTTCCTTTACAC
GGTGTTTCCTCCGACTGACTTTCTTCGCCCTAAACCCCAGCTCTCCCAGG
TGGCTCTTGCCATCTTCCCCCTTCAGGCTTCCTCCCCTCCTTCCCTCCCT
CCTTCCCGTTCCATCATCCCCCAAGCCCCTTTCTCCCTCCTCCCTCCTCC
CTCCTCCTTCCTTCCTCCCTCTCCCAGCACTGAAAAATTTGGCCGGGTGC
TTATCCTCGTCAAATTAA
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Synonyms
Publications