rna1283, rna1283 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1283
Unique Name	rna1283
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1878
Alignment location	CM002457.1:234827..237540 +

Link to JBrowse

Properties


Property Name	Value
Product	glutathione reductase
Orig transcript id	gnl\|cribi\|Naga_100042g7.5658.mrna
Orig protein id	gnl\|cribi\|Naga_100042g7.5658
Gene	GSR
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:234827..237540 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
GSR	gene1237	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1283	rna1283-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29411.1	cds1281	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:234827..237540+
coding sequence from alignment at CM002457.1:234827..237540+

mRNA sequence

>rna1283 ID=rna1283|Name=rna1283|organism=Nannochloropsis gaditana|type=mRNA|length=1878bp
CGACCGAGCGTCGCATTAACAACGGAGTAACCTAAGACATAACGGGCTAC
GAACGTCGCTGAGGAGAGGGAAGGACGCATGTGCGGGCAAGCCACATATC
TGTGATATGTTGGTTGCCTCCTTCATCCCAGCTGTACAGTGGACACAGGC
ATGGGCTGCTGATGTCAACGATGCCGTGGACAATGGTGCCGTGTGGGTGC
GGAGGACCTTGTCAACTGGCTTTCCAACTTGCAGCACGGTGCCAGGAGGA
ACGCGGCGCCTCTGCCCTCTTTGACAAAAGTTCTTCAACATGCGTTTTCT
TTTGGGAAGCCTGTTTGCAGTGCTCCTGTTTGAAAGCGTCATCTTATCGT
CCATATCTACTCGCATCCATGACATGATGGCTTAGTCTTCTTTGTTCTTT
TTACCAGTTCATGAAGTCTCATTTTATGGCCTTCCTCAGCCTTGCCACAG
CTAGAAGACGGGCTCTTCAGGAGAGGCACCATCAATATGTCTGCCTCATC
TTTTGCTGCCCGTAAGGGACTTTTCATTGTCGGTGCTAAACGCACGCCGT
TCGGCGCTTTTGGAGGTAAACTTAAGAACTTTTCCGCCACCGAACTTGCC
TATTTGGCCTCTAAAGCGGCTCTGTGCCAAGCAAAGCTTGATCCTAGCGC
GGTCAATGTCGTGTACGCAGGGAACGTTATTCAGTCTTCCAATGACGCAT
GTTACCTTGCCAGGCACATGGGCTTGAAAGCCGGCGTCCCCCAACATGTC
CCTGCATTGACGATCAACCGCTTGTGTGGCAGTGGCTTTGAAACGGTCAT
CATGGGTTGTGAAGCCATGGAGCTCGGCCAAGCCTCGGTTGCCCTGGCGG
CAGGCACGGAGAACATGTCGGCCGCACCCTTTGTAGTCGACGGGAACAGT
GTGCGCTGGGGGGTACCCTTGGGGAAAGGACCCGAAATGAAGGATTCCCT
GTGGGCTGGTCTCACGGATTCGTTGGCTGGCACGCCCATGGGAATCACGG
CGGAGAACCTGGGTGCCAAGTACGGAATTACCCGGCAGGAATGCGACGAA
TTTGGCCTTCGCTCTCAGCACTTATGGGCCAAGGCCCAAGAAAGGGGCGC
CCTCCAGGCGGAGATCGTGCCAGTGGAGGTAAAGACGAAGAAGGGCATCG
ACTTGGTCACCGTGGACGAGCACCCGCGGCCGCAGGTGGAGCTGGCCAAG
ATGTCCAAACTCAACCCGGTGTTTAAAAAAGACGGGCTGGTGACAGCGGC
CAACGCCAGTGGGATCGCCGACGGGGCCGGGGCCCTGGTCCTTGCCACGG
AGGACACCGTGCACGCCCACAAGCTGGAGCCTTTGGCCAGGGTGGTTGCC
TGGTCGCGGGTGGGCTGCGATCCCAGCATCATGGGGATCGGACCTGTGGA
GGCGATCCGTGGGGCCCTCTCTGTCTCGGGCGTGGCCTTGGCGGACCTGG
ATCGGATCGAGATCAACGAGGCCTTTGCCGCCCAGTTCCTCGCCTGCGCC
AAGGAGTTGGGGCTGGACATGAGCAAGACGAACGTGCACGGAGGGGCGAT
CGCCTTGGGCCACCCCTTGGCCGCCTCTGGCTCGAGGATTGTAGCCCACT
TGGCGAATGGGTTGAAGGGCCAGCAGGGGGGAAAGAAAGGCTATGTGATG
GGAAGCGCCTGCATCGGGGGCGGCCAGGGCATCGCCGTCTTGCTCCAAGC
GGTGTGAGAGGCGAGCAGAGGGGGGAGGGGTTAAGAGGGAGGAGGGGGAG
GGCAGGCATGAAGGATGGTTACAGGAGGGGGAGGAATGGACAGGGAGGGT
GGAGACAGGGGGAGGGAGGCTTCCCGGATACCAATTTTGCAAAGAAAGAA
GAAACTGAGCGTCCCTGTAGATCAAGAA

protein sequence of rna1283

>rna1283-protein ID=rna1283-protein|Name=rna1283|organism=Nannochloropsis gaditana|type=polypeptide|length=525bp
MLPFVRGGSVLFLALVLSVLLEHVAHAFLPLPNCVKRQTSRLSGLRSRHS
FLKALASSSDSTHFDFLVIGAGSGGIASARRAASYGVKVAVVEKKALGGT
CVNVGCVPKKVMWNAAHVREIMLGAKNFGFDVDGHDVGFDWPMLKKARDD
YVSRLNGIYAKNLAASEVALLEGAASFSGPKSLRIGSKEYTAEHILIAVG
GQPRMLDIPGAQEHAITSDGFFELAEQPKRVGVVGGGYIAVELAGVLHEL
GSQTTIICRGDGVLRGFDELISTTLVEEMKKAGMAFKHDATPKAIRKEAE
GLIVELEEGGTVGPFDTVLLATGRVTAIDSLGLAEAGVETDKRGNVLVDE
YQNTNVGGVYALGDVCGRVQLTPMAIAAGRRLADRLFGSLPEAKADYDDV
PTVVFSHPPIGTVGLTEAQAKEEYGEGNVRVYSSKFVNLFYGPWRLAPEE
KPKTAMKMVCVGEEERVVGLHVIGMGADEMLQGFAVAVKMGATKADFDAC
VALHPTAAEELVTLSPWGLRGKRSR

mRNA from alignment at CM002457.1:234827..237540+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1283 ID=rna1283|Name=rna1283|organism=Nannochloropsis gaditana|type=mRNA|length=2714bp|location=Sequence derived from alignment at CM002457.1:234827..237540+ (Nannochloropsis gaditana)
ACAAGGTCCTCCGCACCCACACGGCACCATTGTCCACGGCATCGTTGACA
TCAGCAGCCCATGCCTGTGTCCACTGTACAGCtgggatgaaggaggcaaC
CAACATATCACAGATATGTGGCTTGCCCGCACatgcgtccttccctctcc
tcagcGACGTTCGTAGCCCGTTATGTCTTAGGTTACTCCGTTGTTAATGC
GACGCTCGGTCGGGCAGGACAAAGTCACAATATTCACTCGCAGAGGGGCC
AAGATACGAGCGTGTCGCTGGCTATGGCCACTCGTCAGCAGCGTTTTGTA
ATGATGGGCAACCCAAATGCCCAAGAAGGAATATATTACTACTGGCGTTA
TTTGAACTGGGTGTATGATACTCCATCGCCCTACCACCTGAGCTAATTTT
ATGCCGTATATCACCTCTCTACATGGCGGGACATACGTGCCCGGCTCGAG
ATTCTTACAAGTATTCCTATATATGAGGTTGTTGCGTGCAGATTACTACA
TCTCAAGTGCTATATTGGCtttatttttccttcttctcttgtGTCACAGG
ACCTGGAAAGCCACCTAGGAGGTCTAAATAGCTTCAACTTCTTTTAATTT
TTCCGAATTCTGTTCGACCGCTTTCACTAGCATGTTACCATTCGTGCGTG
GCGGTAgcgttctcttcctcgctctgGTGTTGAGCGTGCTTCTCGAGCAT
GTAGCACATGCATTCCTGCCTCTGCCGAACTGTGTCAAGGTACGTCGCcg
aagggggaaagtgtGCCCCGGCTCAACTCGCCTCAACGGGACAATTTTCT
CATTTCATGCCTCACCAGCTCTTGCGAATTTCGATATGAGCACAACACTT
TGTCTACGCTCGTCCTCATCTATCCCTCTTTTGTGGGGCGCTTTCCCCAG
CGGCAGACCTCCCGACTCTCCGGTCTTCGATCCCGCCACTCCTTCCTGAA
AGCTTTAGCCTCTTCCTCTGACTCGACACATTTCGACTTCCTGGTGATCG
GTGCCGGGAGTGGTGGCATTGCCTCAGCCCGGCGTGCGGCCTCATACGGT
GTCAAAGTCGCCGtcgtggaaaaaaaagcCCTGGGGGGCACCTGTGTGAA
TGTGGGCTGCGTCCCGAAGAAAGTCATGTGGAACGCCGCGCACGTCCGGG
AGATCATGCTGGGCGCCAAGAACTTTGGGTTTGACGTGGACGGGCATGAC
GTGGGCTTCGATTGGCCCATGCTGAAGAAGGTATGGGTGGCCGGatggcc
cgggggggggtagaCGGTAGCGGAAACGCATGTAAGGAATGCCGTGCCTT
TCCATCGCCTCGCCAGCATGGCATATAATTCAAGACGTTAACATCTTATC
CCATGCGTAGAACTCATTGCAAGGTCGTGTACTtgccccgtccctccctc
gctcgctccctccctccctccctccctccttccctccctccttccgcagG
CGCGTGACGACTACGTCTCTCGGCTCAACGGGATCTATGCCAAGAACCTG
GCTGCCTCAGAAGTCGCTCTGTTGGAAGGTGCCGCCTCCTTTTCAGGCCC
CAAAAGCTTGCGGATCGGATCGAAGGAGTACACAGCGGAGCACATCCTGA
TTGCCGTCGGGGGGCAGCCGCGGATGCTCGACATCCCCGGAGCGCAGGAG
CATGCGATTACCAGCGACGGCTTCTTCGAGCTCGCCGAGCAGCCGAAGcg
ggtgggggtggtggggggtggCTACATCGCCGTGGAGTTGGCCGGTGTCC
TCCATGAGCTTGGGAGCCAGACGACCATCATTTGCCGCGGGGACGGCGTC
CTCCGGGGCTTCGACGAGCTGATCTCCAccacgctggtggaggagatgaa
gaaagcGGGGATGGCCTTCAAACACGACGCCACCCCCAAGGCGATCcgga
aggaggcggaaggctTGATcgtggagctggaggaggggggcacagTGGGT
CCCTTTGATACGGTCCTACTCGCCACGGGGCGGGTCACCGCCATCGATTC
CTTGGGCTTGGcagaggcgggggtggagacGGACAAGCGGGGAAACGTGC
TGGTGGATGAATACCAGAACACGAACGTGGGGGGGGTATACGCCCTGGGG
GACGTGTGCGGGCGCGTGCAATTGACGCCCATGGCCATCGCAGCCGGACG
TCGACTGGCTGATCGGCTTTTCGGTTCCCTCCCTGAGGCGAAGGCGGACT
ACGACGATGTGCCCACGGTGGTCTTCTCGCACCCGCCCATCGGTACCGTG
GGCCTGACGGAGGcgcaggccaaggaggagtacggggaaggaaacgtgCG
GGTATACAGCAGCAAGTTTGTGAACCTCTTCTACGGCCCCTGGCGCCTGG
CCCCGGAGGAGAAACCCAAGACCGCGATGAAGATGGTgtgcgtgggggag
gaggagcgggtaGTGGGCCTTCATGTGATCGGGATGGGTGCGGACGAGAT
GCTACAGGGCTTTGCCGTGGCCGTCAAAATGGGGGCTACCAAGGCAGATT
TCGACGCCTGCGTCGCCTTGCACCCCACagccgcggaggagctggtcaCC
CTGAGCCCGTGGGGcctgagggggaagagaagtcGATAGAGAGGTTGTGG
AGGACGGCTGCGTGCATAAGATGAGAGTGGAACGGGAAGTGAGATGGGGC
CACTAGGTGGCATCTAGCCGTCGGGTTGActtgaaagaaaaaaacTTTGA
TGAGGGCTTCGGAT

Coding sequence (CDS) from alignment at CM002457.1:234827..237540+

>rna1283 ID=rna1283|Name=rna1283|organism=Nannochloropsis gaditana|type=CDS|length=4734bp|location=Sequence derived from alignment at CM002457.1:234827..237540+ (Nannochloropsis gaditana)
ATGTTACCATTCGTGCGTGGCGGTAgcgttctcttcctcgctctgGTGTT
GAGCGTGCTTCTCGAGCATGTAGCACATGCATTCCTGCCTCTGCCGAACT
GTGTCAAGCGGCAGACCTCCCGACTCTCCGGTCTTCGATCCCGCCACTCC
TTCCTGAAAGCTTTAGCCTCTTCCTCTGACTCGACACATTTCGACTTCCT
GGTGATCGGTGCCGGGAGTGGTGGCATTGCCTCAGCCCGGCGTGCGGCCT
CATACGGTGTCAAAGTCGCCGtcgtggaaaaaaaagcCCTGGGGGGCACC
TGTGTGAATGTGGGCTGCGTCCCGAAGAAAGTCATGTGGAACGCCGCGCA
CGTCCGGGAGATCATGCTGGGCGCCAAGAACTTTGGGTTTGACGTGGACG
GGCATGACGTGGGCTTCGATTGGCCCATGCTGAAGAAGGCGCGTGACGAC
TACGTCTCTCGGCTCAACGGGATCTATGCCAAGAACCTGGCTGCCTCAGA
AGTCGCTCTGTTGGAAGGTGCCGCCTCCTTTTCAGGCCCCAAAAGCTTGC
GGATCGGATCGAAGGAGTACACAGCGGAGCACATCCTGATTGCCGTCGGG
GGGCAGCCGCGGATGCTCGACATCCCCGGAGCGCAGGAGCATGCGATTAC
CAGCGACGGCTTCTTCGAGCTCGCCGAGCAGCCGAAGcgggtgggggtgg
tggggggtggCTACATCGCCGTGGAGTTGGCCGGTGTCCTCCATGAGCTT
GGGAGCCAGACGACCATCATTTGCCGCGGGGACGGCGTCCTCCGGGGCTT
CGACGAGCTGATCTCCAccacgctggtggaggagatgaagaaagcGGGGA
TGGCCTTCAAACACGACGCCACCCCCAAGGCGATCcggaaggaggcggaa
ggctTGATcgtggagctggaggaggggggcacagTGGGTCCCTTTGATAC
GGTCCTACTCGCCACGGGGCGGGTCACCGCCATCGATTCCTTGGGCTTGG
cagaggcgggggtggagacGGACAAGCGGGGAAACGTGCTGGTGGATGAA
TACCAGAACACGAACGTGGGGGGGGTATACGCCCTGGGGGACGTGTGCGG
GCGCGTGCAATTGACGCCCATGGCCATCGCAGCCGGACGTCGACTGGCTG
ATCGGCTTTTCGGTTCCCTCCCTGAGGCGAAGGCGGACTACGACGATGTG
CCCACGGTGGTCTTCTCGCACCCGCCCATCGGTACCGTGGGCCTGACGGA
GGcgcaggccaaggaggagtacggggaaggaaacgtgCGGGTATACAGCA
GCAAGTTTGTGAACCTCTTCTACGGCCCCTGGCGCCTGGCCCCGGAGGAG
AAACCCAAGACCGCGATGAAGATGGTgtgcgtgggggaggaggagcgggt
aGTGGGCCTTCATGTGATCGGGATGGGTGCGGACGAGATGCTACAGGGCT
TTGCCGTGGCCGTCAAAATGGGGGCTACCAAGGCAGATTTCGACGCCTGC
GTCGCCTTGCACCCCACagccgcggaggagctggtcaCCCTGAGCCCGTG
GGGcctgagggggaagagaagtcGATAGATGTTACCATTCGTGCGTGGCG
GTAgcgttctcttcctcgctctgGTGTTGAGCGTGCTTCTCGAGCATGTA
GCACATGCATTCCTGCCTCTGCCGAACTGTGTCAAGCGGCAGACCTCCCG
ACTCTCCGGTCTTCGATCCCGCCACTCCTTCCTGAAAGCTTTAGCCTCTT
CCTCTGACTCGACACATTTCGACTTCCTGGTGATCGGTGCCGGGAGTGGT
GGCATTGCCTCAGCCCGGCGTGCGGCCTCATACGGTGTCAAAGTCGCCGt
cgtggaaaaaaaagcCCTGGGGGGCACCTGTGTGAATGTGGGCTGCGTCC
CGAAGAAAGTCATGTGGAACGCCGCGCACGTCCGGGAGATCATGCTGGGC
GCCAAGAACTTTGGGTTTGACGTGGACGGGCATGACGTGGGCTTCGATTG
GCCCATGCTGAAGAAGGCGCGTGACGACTACGTCTCTCGGCTCAACGGGA
TCTATGCCAAGAACCTGGCTGCCTCAGAAGTCGCTCTGTTGGAAGGTGCC
GCCTCCTTTTCAGGCCCCAAAAGCTTGCGGATCGGATCGAAGGAGTACAC
AGCGGAGCACATCCTGATTGCCGTCGGGGGGCAGCCGCGGATGCTCGACA
TCCCCGGAGCGCAGGAGCATGCGATTACCAGCGACGGCTTCTTCGAGCTC
GCCGAGCAGCCGAAGcgggtgggggtggtggggggtggCTACATCGCCGT
GGAGTTGGCCGGTGTCCTCCATGAGCTTGGGAGCCAGACGACCATCATTT
GCCGCGGGGACGGCGTCCTCCGGGGCTTCGACGAGCTGATCTCCAccacg
ctggtggaggagatgaagaaagcGGGGATGGCCTTCAAACACGACGCCAC
CCCCAAGGCGATCcggaaggaggcggaaggctTGATcgtggagctggagg
aggggggcacagTGGGTCCCTTTGATACGGTCCTACTCGCCACGGGGCGG
GTCACCGCCATCGATTCCTTGGGCTTGGcagaggcgggggtggagacGGA
CAAGCGGGGAAACGTGCTGGTGGATGAATACCAGAACACGAACGTGGGGG
GGGTATACGCCCTGGGGGACGTGTGCGGGCGCGTGCAATTGACGCCCATG
GCCATCGCAGCCGGACGTCGACTGGCTGATCGGCTTTTCGGTTCCCTCCC
TGAGGCGAAGGCGGACTACGACGATGTGCCCACGGTGGTCTTCTCGCACC
CGCCCATCGGTACCGTGGGCCTGACGGAGGcgcaggccaaggaggagtac
ggggaaggaaacgtgCGGGTATACAGCAGCAAGTTTGTGAACCTCTTCTA
CGGCCCCTGGCGCCTGGCCCCGGAGGAGAAACCCAAGACCGCGATGAAGA
TGGTgtgcgtgggggaggaggagcgggtaGTGGGCCTTCATGTGATCGGG
ATGGGTGCGGACGAGATGCTACAGGGCTTTGCCGTGGCCGTCAAAATGGG
GGCTACCAAGGCAGATTTCGACGCCTGCGTCGCCTTGCACCCCACagccg
cggaggagctggtcaCCCTGAGCCCGTGGGGcctgagggggaagagaagt
cGATAGATGTTACCATTCGTGCGTGGCGGTAgcgttctcttcctcgctct
gGTGTTGAGCGTGCTTCTCGAGCATGTAGCACATGCATTCCTGCCTCTGC
CGAACTGTGTCAAGCGGCAGACCTCCCGACTCTCCGGTCTTCGATCCCGC
CACTCCTTCCTGAAAGCTTTAGCCTCTTCCTCTGACTCGACACATTTCGA
CTTCCTGGTGATCGGTGCCGGGAGTGGTGGCATTGCCTCAGCCCGGCGTG
CGGCCTCATACGGTGTCAAAGTCGCCGtcgtggaaaaaaaagcCCTGGGG
GGCACCTGTGTGAATGTGGGCTGCGTCCCGAAGAAAGTCATGTGGAACGC
CGCGCACGTCCGGGAGATCATGCTGGGCGCCAAGAACTTTGGGTTTGACG
TGGACGGGCATGACGTGGGCTTCGATTGGCCCATGCTGAAGAAGGCGCGT
GACGACTACGTCTCTCGGCTCAACGGGATCTATGCCAAGAACCTGGCTGC
CTCAGAAGTCGCTCTGTTGGAAGGTGCCGCCTCCTTTTCAGGCCCCAAAA
GCTTGCGGATCGGATCGAAGGAGTACACAGCGGAGCACATCCTGATTGCC
GTCGGGGGGCAGCCGCGGATGCTCGACATCCCCGGAGCGCAGGAGCATGC
GATTACCAGCGACGGCTTCTTCGAGCTCGCCGAGCAGCCGAAGcgggtgg
gggtggtggggggtggCTACATCGCCGTGGAGTTGGCCGGTGTCCTCCAT
GAGCTTGGGAGCCAGACGACCATCATTTGCCGCGGGGACGGCGTCCTCCG
GGGCTTCGACGAGCTGATCTCCAccacgctggtggaggagatgaagaaag
cGGGGATGGCCTTCAAACACGACGCCACCCCCAAGGCGATCcggaaggag
gcggaaggctTGATcgtggagctggaggaggggggcacagTGGGTCCCTT
TGATACGGTCCTACTCGCCACGGGGCGGGTCACCGCCATCGATTCCTTGG
GCTTGGcagaggcgggggtggagacGGACAAGCGGGGAAACGTGCTGGTG
GATGAATACCAGAACACGAACGTGGGGGGGGTATACGCCCTGGGGGACGT
GTGCGGGCGCGTGCAATTGACGCCCATGGCCATCGCAGCCGGACGTCGAC
TGGCTGATCGGCTTTTCGGTTCCCTCCCTGAGGCGAAGGCGGACTACGAC
GATGTGCCCACGGTGGTCTTCTCGCACCCGCCCATCGGTACCGTGGGCCT
GACGGAGGcgcaggccaaggaggagtacggggaaggaaacgtgCGGGTAT
ACAGCAGCAAGTTTGTGAACCTCTTCTACGGCCCCTGGCGCCTGGCCCCG
GAGGAGAAACCCAAGACCGCGATGAAGATGGTgtgcgtgggggaggagga
gcgggtaGTGGGCCTTCATGTGATCGGGATGGGTGCGGACGAGATGCTAC
AGGGCTTTGCCGTGGCCGTCAAAATGGGGGCTACCAAGGCAGATTTCGAC
GCCTGCGTCGCCTTGCACCCCACagccgcggaggagctggtcaCCCTGAG
CCCGTGGGGcctgagggggaagagaagtcGATAG

Synonyms

Publications