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Properties
| Property Name | Value |
|---|
| Product | ion channel |
| Orig transcript id | gnl|cribi|Naga_100042g13.5655.mrna |
| Orig protein id | gnl|cribi|Naga_100042g13.5655 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:222884..225023 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1278 ID=rna1278|Name=rna1278|organism=Nannochloropsis gaditana|type=mRNA|length=2458bp
CCCCCCGCCGATTTTTGACTTTGTATACTCTTTGCCTCTCGCTGTCCGCT
TAATGGGGCCTTCACGACGTCTTGCGTTACCACATTACACAGGCCACTCG
CTCACAAAGGAGTTCTTTTGCTCATTTTGTGGACGGAAATAAAGAGGCCA
AGATTGGGCTGTGACCGACGTACAACAACTGCCGCCCCCCGCTACTTCAT
TTACAACCACACCGCTCCCGTCCCGCCCTCCGGACCACCTCTCCACGCCG
TCGGCGCGCGGTATCGTCGTGCTTCGTGAGGAACGAGACGCGAACGTACG
CTTGATCCGAACAGCGTCGGGCCGCACACGGTGGGTGCATGGGATACTCC
ATCGCCTCCCTTCCTCCTTTGCCATCCCCACGTCAACAGTCAGCAACACG
GACGAGCAAAACAAGAAGAAGAAGAGAGGCGGGTGCAGGAATATGGGTAA
TGACGTCTCGGAAGACTGCGCGCTGCGTAAGGCCATGTTAGCGGATGAAG
ACCGTTTCCCCTCCTCGCCCTCGTCTGTGCCCTCAACGCCGTCTTCGCCC
TCGTCGTCGTACTCTCTCTCCTCCGAGAGCGAGCATGAAACGGAGGATGC
GCGGAGAGAGCGGTGGGATGCAAACAGGAAAACTAGGAAGGCTCATGTTT
TCAGAGAAGCGCGCAGAGAGTGCGATGAGGGTGTGGAGGAGGAGGAGAAG
GAGGAGGACGAATGGATCCAAGGGACCGTGGCGAGCAGGACTGGCGGCCG
GCATGGAAGCGGAAGCAAAAAGAAGAATCGAAACAGCAGGAAGAAAGGGC
CCAAGCTGGGAAGAGGGGGCGCAGGCGTGGCCATTGAGCATGGCTGCAGC
AGCTCCCAGACCAAGGAAGAAGAGCTGGCCTCGTCATTGCCCGCGTGCCC
CGCGGATATCCCGACTTCTAGGCTACTCCACACCGGCCCCCTTCATCCCT
TGCCCAGGATCGGACAGCACGGACGGAACAGGAGCAGCGACAGCTGTAGC
CTTGTCGACCGCAGTGGCAAGGGCGTGCTATCGGCGGCGGCGCTCGCGGC
GACGGCGACGGCGAATGGGTCCATCGCCGTCCCCTTACCCAGCGCCGCTG
CCTCCTCCTCCTCTTCCTCAACCGAAGTTGCTGCCAAGCACAAAGCCGCG
GGCAAGAAAAGGGTGGAATGGGGCCAGGTAGTAGTGCGTCGGTATTTCCG
GATGCCATCCCCCCACAGCGTCCCCGTCCGAGGAGCCTGGCCCCTGGGAC
TTGGCGCTGAGGACGGACAACCGCCCTCACAAGTCTCCGTGGACGCATAC
GAGCGACAAAGACAAAAGGAACTGGAGCGGCGGTGGCAGGAGCTCCCGAA
GCGGTTGCGGAAAACGGTGGGGTGTGGAGAGGGAGGGTTGGAAAGCCGGC
AGTACGACTATAAGGCTCCGGAAGAGCGTAACCCGTTGTTTGGGCCCATG
GAGGAACGCAGGCGGAAACTTACCCTGCTCCAGGCTTTGGAAAGCATGGG
GGAGGAAGGGTCCGGAGGCGGGAAAGAGGTCAGCTCGGACTCGTTGAGCA
GCAGTCCCTGCGGTTCCCCCAGGAAAACCACCCTGGCGGCATCCCTCTAT
CTCAGCCGGTACCAGGCATGGGAAGAGCAGGAAGAAGCGCGGAGTCGGGA
ACTGGACGAATTGCGGGCGTCGCGGAAGCAGATTGGATGCAGCTGTCACC
ACACGGCCAAGGCGCCGGAGAAGCTGTCTTTGAAGAAACTGAAGGAGGAG
CTCCACCGCCGGCACCTGAGCGCCCCTGGGACCGATAAAGCCATGCTGTT
GGAGATGCTCAAAGAAGCGCTGCAGAAGGAGAAGCTGTGCAGCGGTGGGG
AAGGCCCAGATGCGTGTGAATGCTTCATAGCAGGCGTTCCTTGCCACGCG
GACGTCTGCGGGTGCTGTGCTGGAAAAAGGGGGAAAGGAGGGGGAAGCGG
GGGCGGGAAAAGCCACCACGATTGTCGAAACCCGGTGGGAAATTTCTTGT
ACGAGGAAGCCTCTGTCCGAGGCCATCGCTTTGAGTACTTGACGGCGGTG
CCGGTGGGCCCACGGCCGCGCAGCTCCTCCATCTAGGCAAGAAATCCTCT
CGGATGTGCGGCACGGGGCCAGCTTGCAGGCGGATCGCTGCTGCGATGGA
GTCGACATATATGTTGGGGCAAAAGCGGTCAGGGGTTGGCATCAGCTCGG
AATGGGAGTATCAAGGCGAGATGCAGGGTTTTGGATGTGTGGGAGTTGAC
GGTAGCCAGTAGCAATGACTGGGCTCATGGAAGAGAAGTTTAAGGGAAGA
GAAGCGAAATCTGATTGAAATTGTTTAGGCGGGAAGCGAGTGGTCACGCG
TTAAAATCAAGAATGAACAGCACACTGTGAAAGTGCCTTCGCTGCTCGCA
CGGAAGCGTTGAGTGAGAGAAGTCGTTTAATGTCGCTTTCCAGTGGTCGT
GTCTCTCC back to topprotein sequence of rna1278 >rna1278-protein ID=rna1278-protein|Name=rna1278|organism=Nannochloropsis gaditana|type=polypeptide|length=518bp
MGDDEVSTVKTAAQWKDEGNELYKKGDYRAAIDAYSLAIAMSPDEASFYG
NRAAAHMMILAYEAAIDDCNKALALSPNMVKAYFRKGKALATLGKFDEAM
TAYHQGLQQDPNNAQGHAEKAEVEAVMKAGAKATELLQETRGPGSSTLQN
GQNGGAVHKRNFVRANALVDQCLSLASASPQVRLLKLECQVGLGQYEEAF
AGSNHLLRLSPSLAPLLYLRAVCLYHLGNFEGALKHLQQAVRSDPDNHAY
VSLLKKVRALDAKKKEGDTCFTQGQYQPAIDAWTEALAVDPSQKAVNAKM
FNNRATAYAKMRKHTEAVADCKRALALDPQYLKALKRKAESLYALGGEEN
LEQCLRDYEAAARLAPASEEREYARKMHQVKVALKRAKRKDLYRILGLST
DATEDEIRKAYRKLALKHHPDRHTNSSEEAKAAAEKAFKDVAEAYEVLSD
KEKRSRYDSGTDVEDLDNPQAQAGSHAGGFGGFGGRGGIDPNVLFQMFMQ
QQAMGGGRGGGGRGGFHF back to topmRNA from alignment at CM002457.1:222884..225023- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1278 ID=rna1278|Name=rna1278|organism=Nannochloropsis gaditana|type=mRNA|length=2140bp|location=Sequence derived from alignment at CM002457.1:222884..225023- (Nannochloropsis gaditana)
CCATCACTAGTAGGAACTCGCGTTGTCATGGGGGATGACGAGGTATCCAC
AGTCAAAACAGCAGCTCAATGGTACGTCGATCACCTGCATACTGTTGGCG
GTGCCCTTTCCTCCCTCCTCGGTGTACACCCTCTCCTGCGTCTGCCACTG
GGTCCCTCTTTTTCACGACAACCCTGCAAGTTTATCCTGAGGATGGTGTC
GATGTGTCACAAGGAAATATGCATTTCTTGCAAAGTGGTCAGGAGGCATT
TCCTGCTCTCAGCTACCTCCTCGCACACAATTCTGCGTCTACTTCTGACT
CTCTTTCCCCGCTACCGATTTACAGGAAAGACGAAGGCAATGAACTCTAT
AAAAAGGGGGATTATCGTGCTGCCATCGATGCATACAGTCTTGCTATCGC
AATGTCACCTGACGAAGCGTCTTTTTACGGCAATCGGGCAGCGGCGCACA
TGATGATATTGGCATATGAAGCTGCTATTGACGACTGCAACAAAGCCTTG
GCATTGAGCCCAAATATGGTCAAAGCCTATTTTAGGAAAGGAAAAGCTCT
GGCAACGCTAGGTGAGAAGCGGAGGGTTAAAATGAAATGCAAAGAGGCGG
ACTTTGACCTTCCTTCTCTGCCGGCGCCTATGGCTACGTCTCCTCTTCAT
CCTTTTCCTGCCTGTCTCATGTTTCTCCAGGCAAATTCGACGAGGCAATG
ACCGCCTACCATCAAGGGCTGCAACAGGACCCGAACAACGCGCAGGGGCA
CGCTGAAAAAGCCGAGGTGGAGGCTGTCATGAAAGCGGGCGCCAAGGCTA
CCGAGCTCCTGCAGGAAACCCGAGGACCTGGCAGCTCCACCCTCCAAAAC
GGCCAGAATGGTGGAGCGGTCCACAAGCGTAACTTTGTTCGGGCGAACGC
CTTGGTGGATCAATGTTTGAGCCTGGCCTCTGCCTCCCCGCAGGTCCGTC
TCCTCAAATTGGAGTGCCAAGTAGGTCTTGGCCAGTACGAGGAAGCCTTC
GCGGGCAGTAACCACCTCCTTCGCCTGTCGCCCTCCCTCGCCCCCTTGCT
GTACCTGCGGGCGGTGTGCCTCTACCATCTGGGCAATTTCGAGGGCGCCC
TCAAACATCTGCAGCAGGCGGTGCGGTCCGACCCCGACAACCACGCCTAC
GTATCGCTCTTGAAAAAAGTCCGGGCCTTGGACGCGAAAAAGAAAGAGGG
GGACACCTGCTTCACCCAAGGCCAGTACCAGCCGGCCATCGACGCCTGGA
CGGAGGCCTTGGCGGTGGACCCTAGCCAGAAAGCAGTGAATGCCAAAATG
TTCAACAACCGGGCGACGGCCTACGCGAAGATGAGGAAGCACACGGAAGC
GGTGGCGGACTGCAAACGGGCCTTGGCCCTGGACCCTCAGTATTTGAAAG
CCCTGAAACGAAAGGCGGAGTCCTTGTATGCCCTGGGGGGGGAGGAGAAC
CTGGAGCAGTGCCTAAGAGACTACGAGGCTGCGGCACGTTTGGCCCCCGC
GTCGGAGGAGCGGGAATACGCCCGGAAAATGCACCAGGTGAAAGTAGCCT
TAAAGCGAGCAAAACGCAAGGACTTGTATAGGATCCTGGGCCTGAGCACG
GATGCGACCGAGGACGAGATCCGCAAGGCGTACCGAAAATTGGCGTTGAA
ACACCATCCAGACCGGCACACGAACAGCAGCGAAGAGGCCAAGGCGGCGG
CCGAGAAAGCGTTCAAGGACGTGGCGGAGGCCTACGAGGTGTTGAGCGAC
AAGGAGAAGAGGTCGCGGTACGACAGTGGGACGGACGTGGAGGATTTGGA
CAACCCGCAGGCCCAGGCCGGGTCGCACGCCGGCGGCTTCGGGGGGTTTG
GGGGCCGAGGGGGGATCGACCCTAACGTGCTCTTTCAAATGTTCATGCAG
CAGCAGGCGATGGGGGGAGGGAGAGGGGGGGGAGGGCGAGGAGGTTTTCA
TTTCTAGGAGCGAGAAAAGGCCTCGGGGTTTCCGCCACTGGGAATGGAGG
TGGGGGTGGGGACTGTAGGAGAGACACGACCACTGGAAAGCGACATTAAA
CGACTTCTCTCACTCAACGCTTCCGTGCGAGCAGCGAAGGCACTTTCACA
GTGTGCTGTTCATTCTTGATTTTAACGCGTGACCACTCGC back to topCoding sequence (CDS) from alignment at CM002457.1:222884..225023- >rna1278 ID=rna1278|Name=rna1278|organism=Nannochloropsis gaditana|type=CDS|length=4671bp|location=Sequence derived from alignment at CM002457.1:222884..225023- (Nannochloropsis gaditana)
GCAAATTCGACGAGGCAATGACCGCCTACCATCAAGGGCTGCAACAGGAC
CCGAACAACGCGCAGGGGCACGCTGAAAAAGCCGAGGTGGAGGCTGTCAT
GAAAGCGGGCGCCAAGGCTACCGAGCTCCTGCAGGAAACCCGAGGACCTG
GCAGCTCCACCCTCCAAAACGGCCAGAATGGTGGAGCGGTCCACAAGCGT
AACTTTGTTCGGGCGAACGCCTTGGTGGATCAATGTTTGAGCCTGGCCTC
TGCCTCCCCGCAGGTCCGTCTCCTCAAATTGGAGTGCCAAGTAGGTCTTG
GCCAGTACGAGGAAGCCTTCGCGGGCAGTAACCACCTCCTTCGCCTGTCG
CCCTCCCTCGCCCCCTTGCTGTACCTGCGGGCGGTGTGCCTCTACCATCT
GGGCAATTTCGAGGGCGCCCTCAAACATCTGCAGCAGGCGGTGCGGTCCG
ACCCCGACAACCACGCCTACGTATCGCTCTTGAAAAAAGTCCGGGCCTTG
GACGCGAAAAAGAAAGAGGGGGACACCTGCTTCACCCAAGGCCAGTACCA
GCCGGCCATCGACGCCTGGACGGAGGCCTTGGCGGTGGACCCTAGCCAGA
AAGCAGTGAATGCCAAAATGTTCAACAACCGGGCGACGGCCTACGCGAAG
ATGAGGAAGCACACGGAAGCGGTGGCGGACTGCAAACGGGCCTTGGCCCT
GGACCCTCAGTATTTGAAAGCCCTGAAACGAAAGGCGGAGTCCTTGTATG
CCCTGGGGGGGGAGGAGAACCTGGAGCAGTGCCTAAGAGACTACGAGGCT
GCGGCACGTTTGGCCCCCGCGTCGGAGGAGCGGGAATACGCCCGGAAAAT
GCACCAGGTGAAAGTAGCCTTAAAGCGAGCAAAACGCAAGGACTTGTATA
GGATCCTGGGCCTGAGCACGGATGCGACCGAGGACGAGATCCGCAAGGCG
TACCGAAAATTGGCGTTGAAACACCATCCAGACCGGCACACGAACAGCAG
CGAAGAGGCCAAGGCGGCGGCCGAGAAAGCGTTCAAGGACGTGGCGGAGG
CCTACGAGGTGTTGAGCGACAAGGAGAAGAGGTCGCGGTACGACAGTGGG
ACGGACGTGGAGGATTTGGACAACCCGCAGGCCCAGGCCGGGTCGCACGC
CGGCGGCTTCGGGGGGTTTGGGGGCCGAGGGGGGATCGACCCTAACGTGC
TCTTTCAAATGTTCATGCAGCAGCAGGCGATGGGGGGAGGGAGAGGGGGG
GGAGGGCGAGGAGGTTTTCATTTCTAGGAAAGACGAAGGCAATGAACTCT
ATAAAAAGGGGGATTATCGTGCTGCCATCGATGCATACAGTCTTGCTATC
GCAATGTCACCTGACGAAGCGTCTTTTTACGGCAATCGGGCAGCGGCGCA
CATGATGATATTGGCATATGAAGCTGCTATTGACGACTGCAACAAAGCCT
TGGCATTGAGCCCAAATATGGTCAAAGCCTATTTTAGGAAAGGAAAAGCT
CTGGCAACGCTAGATGGGGGATGACGAGGTATCCACAGTCAAAACAGCAG
CTCAATGGCAAATTCGACGAGGCAATGACCGCCTACCATCAAGGGCTGCA
ACAGGACCCGAACAACGCGCAGGGGCACGCTGAAAAAGCCGAGGTGGAGG
CTGTCATGAAAGCGGGCGCCAAGGCTACCGAGCTCCTGCAGGAAACCCGA
GGACCTGGCAGCTCCACCCTCCAAAACGGCCAGAATGGTGGAGCGGTCCA
CAAGCGTAACTTTGTTCGGGCGAACGCCTTGGTGGATCAATGTTTGAGCC
TGGCCTCTGCCTCCCCGCAGGTCCGTCTCCTCAAATTGGAGTGCCAAGTA
GGTCTTGGCCAGTACGAGGAAGCCTTCGCGGGCAGTAACCACCTCCTTCG
CCTGTCGCCCTCCCTCGCCCCCTTGCTGTACCTGCGGGCGGTGTGCCTCT
ACCATCTGGGCAATTTCGAGGGCGCCCTCAAACATCTGCAGCAGGCGGTG
CGGTCCGACCCCGACAACCACGCCTACGTATCGCTCTTGAAAAAAGTCCG
GGCCTTGGACGCGAAAAAGAAAGAGGGGGACACCTGCTTCACCCAAGGCC
AGTACCAGCCGGCCATCGACGCCTGGACGGAGGCCTTGGCGGTGGACCCT
AGCCAGAAAGCAGTGAATGCCAAAATGTTCAACAACCGGGCGACGGCCTA
CGCGAAGATGAGGAAGCACACGGAAGCGGTGGCGGACTGCAAACGGGCCT
TGGCCCTGGACCCTCAGTATTTGAAAGCCCTGAAACGAAAGGCGGAGTCC
TTGTATGCCCTGGGGGGGGAGGAGAACCTGGAGCAGTGCCTAAGAGACTA
CGAGGCTGCGGCACGTTTGGCCCCCGCGTCGGAGGAGCGGGAATACGCCC
GGAAAATGCACCAGGTGAAAGTAGCCTTAAAGCGAGCAAAACGCAAGGAC
TTGTATAGGATCCTGGGCCTGAGCACGGATGCGACCGAGGACGAGATCCG
CAAGGCGTACCGAAAATTGGCGTTGAAACACCATCCAGACCGGCACACGA
ACAGCAGCGAAGAGGCCAAGGCGGCGGCCGAGAAAGCGTTCAAGGACGTG
GCGGAGGCCTACGAGGTGTTGAGCGACAAGGAGAAGAGGTCGCGGTACGA
CAGTGGGACGGACGTGGAGGATTTGGACAACCCGCAGGCCCAGGCCGGGT
CGCACGCCGGCGGCTTCGGGGGGTTTGGGGGCCGAGGGGGGATCGACCCT
AACGTGCTCTTTCAAATGTTCATGCAGCAGCAGGCGATGGGGGGAGGGAG
AGGGGGGGGAGGGCGAGGAGGTTTTCATTTCTAGGAAAGACGAAGGCAAT
GAACTCTATAAAAAGGGGGATTATCGTGCTGCCATCGATGCATACAGTCT
TGCTATCGCAATGTCACCTGACGAAGCGTCTTTTTACGGCAATCGGGCAG
CGGCGCACATGATGATATTGGCATATGAAGCTGCTATTGACGACTGCAAC
AAAGCCTTGGCATTGAGCCCAAATATGGTCAAAGCCTATTTTAGGAAAGG
AAAAGCTCTGGCAACGCTAGATGGGGGATGACGAGGTATCCACAGTCAAA
ACAGCAGCTCAATGGCAAATTCGACGAGGCAATGACCGCCTACCATCAAG
GGCTGCAACAGGACCCGAACAACGCGCAGGGGCACGCTGAAAAAGCCGAG
GTGGAGGCTGTCATGAAAGCGGGCGCCAAGGCTACCGAGCTCCTGCAGGA
AACCCGAGGACCTGGCAGCTCCACCCTCCAAAACGGCCAGAATGGTGGAG
CGGTCCACAAGCGTAACTTTGTTCGGGCGAACGCCTTGGTGGATCAATGT
TTGAGCCTGGCCTCTGCCTCCCCGCAGGTCCGTCTCCTCAAATTGGAGTG
CCAAGTAGGTCTTGGCCAGTACGAGGAAGCCTTCGCGGGCAGTAACCACC
TCCTTCGCCTGTCGCCCTCCCTCGCCCCCTTGCTGTACCTGCGGGCGGTG
TGCCTCTACCATCTGGGCAATTTCGAGGGCGCCCTCAAACATCTGCAGCA
GGCGGTGCGGTCCGACCCCGACAACCACGCCTACGTATCGCTCTTGAAAA
AAGTCCGGGCCTTGGACGCGAAAAAGAAAGAGGGGGACACCTGCTTCACC
CAAGGCCAGTACCAGCCGGCCATCGACGCCTGGACGGAGGCCTTGGCGGT
GGACCCTAGCCAGAAAGCAGTGAATGCCAAAATGTTCAACAACCGGGCGA
CGGCCTACGCGAAGATGAGGAAGCACACGGAAGCGGTGGCGGACTGCAAA
CGGGCCTTGGCCCTGGACCCTCAGTATTTGAAAGCCCTGAAACGAAAGGC
GGAGTCCTTGTATGCCCTGGGGGGGGAGGAGAACCTGGAGCAGTGCCTAA
GAGACTACGAGGCTGCGGCACGTTTGGCCCCCGCGTCGGAGGAGCGGGAA
TACGCCCGGAAAATGCACCAGGTGAAAGTAGCCTTAAAGCGAGCAAAACG
CAAGGACTTGTATAGGATCCTGGGCCTGAGCACGGATGCGACCGAGGACG
AGATCCGCAAGGCGTACCGAAAATTGGCGTTGAAACACCATCCAGACCGG
CACACGAACAGCAGCGAAGAGGCCAAGGCGGCGGCCGAGAAAGCGTTCAA
GGACGTGGCGGAGGCCTACGAGGTGTTGAGCGACAAGGAGAAGAGGTCGC
GGTACGACAGTGGGACGGACGTGGAGGATTTGGACAACCCGCAGGCCCAG
GCCGGGTCGCACGCCGGCGGCTTCGGGGGGTTTGGGGGCCGAGGGGGGAT
CGACCCTAACGTGCTCTTTCAAATGTTCATGCAGCAGCAGGCGATGGGGG
GAGGGAGAGGGGGGGGAGGGCGAGGAGGTTTTCATTTCTAGGAAAGACGA
AGGCAATGAACTCTATAAAAAGGGGGATTATCGTGCTGCCATCGATGCAT
ACAGTCTTGCTATCGCAATGTCACCTGACGAAGCGTCTTTTTACGGCAAT
CGGGCAGCGGCGCACATGATGATATTGGCATATGAAGCTGCTATTGACGA
CTGCAACAAAGCCTTGGCATTGAGCCCAAATATGGTCAAAGCCTATTTTA
GGAAAGGAAAAGCTCTGGCAACGCTAGATGGGGGATGACGAGGTATCCAC
AGTCAAAACAGCAGCTCAATG back to top
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