|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100042g14.5656.mrna |
| Orig protein id | gnl|cribi|Naga_100042g14.5656 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:220549..223006 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1277 ID=rna1277|Name=rna1277|organism=Nannochloropsis gaditana|type=mRNA|length=2461bp
ATGAAAAATGCAGCCACACGCCAGTGCACGCATTGTCCAAGAAGCGACGG
CCTTCATGGCGTGGTTGCAGTCATTTTGACACCAGGGTATACACACGAAG
AAAGCCCCTCCCAGCTTGTCCGGGAACCGCTCCTCACGCAAATGGTTGTA
TCCCAAGATGTAACCAGACGCCGACGTCGACCACATTGGGGTGGTTTTGT
ATTTGTGCTAGGAATGACAGCTTCAGTGGCCACGGCATGGCAACCTTTAT
CCATGACAAAATCACAAGGCCTGCACGCCATGCCATTCGGGCCCCTGTCC
GCTTCATCCTTCACAGGCGTACGACACCAAAGCGCCTTTCCATCGGCAAG
TATAGCCATCTTGCCGATGACGAAGCAATATTCACGGTCTTGCGCCCTCA
AGATGCACATCGGGCCTCACAGCCATGGCCACGAGCCTCCTCACCAGCAC
CCCGACGGCCATCCCCCTTTGGCGCACATGACGGGCGTGAGAGGCTTTGT
CCTGTATATCATCTCCGTCTTGAAACAAAAAAAACAGACGATCGCAGGCG
TCTTGTTGGGAGCCGTGGCGGTGGTGGCGGTCAGGTCCTATCAAGGTGTA
CGCCGGTTCTCTGGTGCAGACGTGGGCATGCTGGGGTTGATCGCAACCTT
CGTGCTTGCCGTGGAAAGCACCAAGTCCTATCTGAACACACTCAGAGAAA
ACATCGCCCAGATCGCCGCCGCATGGCGCGCGCACCGTTCCCTGCGCTTG
CTGCACAGTGAACGGCCGCTGGCCACAGGTGGCCCCGCTGTCTCCCAATT
GGCAGCCGGGGCGGCGGAGAGCGACCGGGTCACCTGGCTGGGGATATACG
CGAACCTGGGCCTCTTCGCCATCAAAGCCACGGCGGGTGTGCTAGGTAGG
TCGGCCGCCATGGTTGCGGACGCCGGCCACACCCTCTCCGACCTGGTCTC
GGACATGGTCACCTTGTGGGCAGTCCGGATGAGCGCCCTGCCCCCCGACG
ACGACCATCCCTACGGCCACGGCCGCTTTGAAGCCGTCGGTTCCCTGGGC
GTGTCCGCCTTGCTCCTGCTCACCGCCTGGCACATCGCGGCGCACGCCTA
TGACAAGCTTCAGTGCACCCTGGCCCTCCCCTCCCTCGGGCCTTTGCCAT
TCTCCTCCTTCTCCCTCTCGGCACTCCGAAGCAGCGTGCCCTGGATGCAA
GGATTGCTTGCACGCGGGGGGCACATGGCTGCGAGCGTGGGAGCGTCCTG
CGAGGCTGCGCCTTCGGCTTTGGCGGTGGTGGCGGCCACGGCCTCCATCG
TGGTCAAAGAGCTTCTGTATCAGATCACAGCCAGCGTGGGCATCAAGCAC
AACAGTCAGGTGGTTCTTGCCAATGCCTGGCACCACCGATCGGACGCGAT
TTCCTCCATCATGGCACTGGGAGGGATCGTGGCCGCTCGGGCGGGATTGG
CAGCCTTGGACCCCATTGCCGGCATTCTCGTCACCGCCATGATAGGGCTC
ACGGGGATGCAGATCTTCCTGGACAGCATGAACCAACTCACCGACACGGT
GGAGAGCGACGCCATTCCCGGCATCCGCCGGGTGGCGGCGTCGGTGGAGG
GAGTCCGCGACACGTCGGACGTCCGGGCCCGTCGCATGGGCCCGCAGCTC
CTTGTCGACCTGCGTATCCTGGTCGACAGCCAGATTTCCGCCTCGGCGGC
GCAACAGGTGGCCGATCAAGTCCGCTGGCGGGTGCGGCGAGACTTTCCCA
ACGTGTCAGAGGTACTCGTCCACACGGTCACTGAGCCCTTGCCCTGTCCT
TTAGCGATGGAGCTTCGTCAGCCCTCCGACATCGAAGCTGACGTCCGGGC
TGCCTTGGGCCCAGATTGGGCCCAACAGGAGCCTTTGGTGCTGGCGGTTA
GGAAAGTGATGGTGCACTATGTGTCCATGGCGCCGACCGTGGACGTCTTG
TTGCAGATCGATCCGGACTTGAGCGTGCGAGAGGCGGGAGAGGTCGCTCG
AAGGGTGCAAAAATTGTTGGAAGGCATCAAAGACGTGACCAAGGCCGAGG
TTCACTTGGATCTGACAAGCACTGGCTCCCCCGCGACTGCAGTGCTGCAC
TCTCCGTCTCCAACGGGGGATTGAAACTACGAGACGTTGTCCTTTTCACG
ACTGCAGTATATCTTCGAGCATTTACTAGGAAATTTCTTTCTGTAATACC
TGATGTTTGTAAATTGGCTTTCTGGGGCATAGAACCAGCTTTTATCATTC
AAATTGAAACATGGAGAAATTATTGACTTTGTCCGTGCCATTTGCGGGAA
GCAAGGGGGCGAACATGGGAGAACCAAAATTGAAAGCGACATTGGCCTGG
GCCTTTTCCCTTGAAAAGTTAATTCATTTCTTCTTTCTTACATTTACATC
ATTTTGTGGTCTGTCTGCCATTCAAAGTGCCCTTCCCTTCTTTTCTTTGA
AGCTAAACTGA back to topprotein sequence of rna1277 >rna1277-protein ID=rna1277-protein|Name=rna1277|organism=Nannochloropsis gaditana|type=polypeptide|length=547bp
MGNDVSEDCALRKAMLADEDRFPSSPSSVPSTPSSPSSSYSLSSESEHET
EDARRERWDANRKTRKAHVFREARRECDEGVEEEEKEEDEWIQGTVASRT
GGRHGSGSKKKNRNSRKKGPKLGRGGAGVAIEHGCSSSQTKEEELASSLP
ACPADIPTSRLLHTGPLHPLPRIGQHGRNRSSDSCSLVDRSGKGVLSAAA
LAATATANGSIAVPLPSAAASSSSSSTEVAAKHKAAGKKRVEWGQVVVRR
YFRMPSPHSVPVRGAWPLGLGAEDGQPPSQVSVDAYERQRQKELERRWQE
LPKRLRKTVGCGEGGLESRQYDYKAPEERNPLFGPMEERRRKLTLLQALE
SMGEEGSGGGKEVSSDSLSSSPCGSPRKTTLAASLYLSRYQAWEEQEEAR
SRELDELRASRKQIGCSCHHTAKAPEKLSLKKLKEELHRRHLSAPGTDKA
MLLEMLKEALQKEKLCSGGEGPDACECFIAGVPCHADVCGCCAGKRGKGG
GSGGGKSHHDCRNPVGNFLYEEASVRGHRFEYLTAVPVGPRPRSSSI back to topmRNA from alignment at CM002457.1:220549..223006+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1277 ID=rna1277|Name=rna1277|organism=Nannochloropsis gaditana|type=mRNA|length=2458bp|location=Sequence derived from alignment at CM002457.1:220549..223006+ (Nannochloropsis gaditana)
ccccccGCCGATTTTTGACTTTGTATACTCTTTGCCTCTCGCTGTCCGCT
TAATGGGGCCTTCACGACGTCTTGCGTTACCACATTACACAGGCCACTCG
CTCACAAAGGAGTTCTTTTGCTCATTTTGTGGACGGAAATAAAGAGGCCA
AGATTGGGCTGTGACCGACGTACAACAACTGCCGCCCCCCGCTACTTCAT
TTACAACCACACCgctcccgtcccgccctccggaCCACCTCTCCACGCCG
TCGGCGCGCGGTATCGTCGTGCTTCGTGAGGAACGAGACGCGAACGTACG
CTTGATCCGAACAGCGTCGGGCCGCACACGGTGGGTGCATGGGAtactcc
atcgcctcccttcctcctttgccatCCCCACGTCAACAGTCAGCAACACG
GACGAGCaaaacaagaagaagaagagaggcggGTGCAGGAATATGGGTAA
TGACGTCTCGGAAGACTGCGCGCTGCGTAAGGCCATGTTAGCGGATGAAG
accgtttcccctcctcgccctcgtctgTGCCCTCAACGCCGTCTtcgccc
tcgtcgtcgtactctctctcctccgagaGCGAGCATGAAACGGAGGATGC
GCGGAGAGAGCGGTGGGATGCAAACAGGAAAACTAGGAAGGCTCATGTTT
TCAGAGAAGCGCGCAGAGAGTGCGATgagggtgtggaggaggaggagaag
gaggaggacgaatgGATCCAAGGGACCGTGGCGAGCAGGACTGGCGGCCG
GCATGGAAGCGGAAGCAAAAAGAAGAATCGAAAcagcaggaagaaagggc
ccaagctgggaagagggggcgcaGGCGTGGCCATTGAGCATGGCTGCAGC
AGCTCCCAgaccaaggaagaagagctggcCTCGTCATTGCCCGCGTGCCC
CGCGGATATCCCGACTTCTAGGCTACTCCACACCGgcccccttcatccct
tgCCCAGGATCGGACAGCACGGACGGAACAGGAGCAGCGACAGCTGTAGC
CTTGTCGACCGCAGTGGCAAGGGCGTGCTATCGGCGGCGGCGCtcgcggc
gacggcgacggcgaatGGGTCCATCGCCGTCCCCTTACCCagcgccgctg
cctcctcctcctcttcctcaaccgAAGTTGCTGCCAAGCACAAAGCCGCG
GGCAAGAAAAGGGTGGAATGGGGCCAGGTAGTAGTGCGTCGGTATTTCCG
GATGCCATCCCCCCACAGCGTCCCCGTCCGAGGAGCCTGGCCCCTGGGAC
TTGGCGCTGAGGACGGACAACCGCCCTCACAAGTCTCCGTGGACGCATAC
GAGCGACAAAGACAAAAGGAACTGGAGCGGCGGTGGCAGGAGCTCCCGAA
GCGGTTGCGGAAAACGGTGgggtgtggagagggagggttggaaaGCCGGC
AGTACGACTATAAGGCTCCGGAAGAGCGTAACCCGTTGTTTGGGCCCATG
GAGGAACGCAGGCGGAAACTTACCCTGCTCCAGGCTTTGGAAagcatggg
ggaggaagggtccggaggcgggaaagaggtcAGCTCGGACTCGTTGAGCA
GCAGTCCCTGCGGTTCCCCCAGGAAAACCACCCTGGCGGCATCCCTCTAT
CTCAGCCGGTACCAGGCAtgggaagagcaggaagaagcGCGGAGTCGGGA
ACTGGACGAATTGCGGGCGTCGCGGAAGCAGATTGGATGCAGCTGTCACC
ACACGGCCAAGGCGCCGGAGAAGCTGTCTTTGAAGAAactgaaggaggag
ctccaCCGCCGGCACCTGAGCGCCCCTGGGACCGATAAAGCCATGCTGTT
GGAGATGCTCAAAGAAGCGctgcagaaggagaagctgtGCAGCGGTGGGG
AAGGCCCAGATGCGTGTGAATGCTTCATAGCAGGCGTTCCTTGCCACGCG
GACGTCTGCGGGTGCTGtgctggaaaaagggggaaaggagggggaagcgg
gggcgggaaaagccACCACGATTGTCGAAACCCGGTGGGAAATTTCTTGT
ACGAGGAAGCCTCTGTCCGAGGCCATCGCTTTGAGTACTTGACGGCGGTG
CCGGTGGGCCCACGGCcgcgcagctcctccatctAGGCAAGAAATCCTCT
CGGATGTGCGGCACGGGGCCAGCTTGCAGGCGGATCGCTGCTGCGATGGA
GTCGACATATATGTTGGGGCAAAAGCGGTCAGGGGTTGGCATCAGCTCGG
AATGGGAGTATCAAGGCGAGATGCAGGGTTTTGGATGTGTGGGAGTTGAC
GGTAGCCAGTAGCAATGACTGGGCTCATGGAAGAGAAGTTTAAGGGAAGA
GAAGCGAAATCTGATTGAAATTGTTTAGGCGGGAAGCGAGTGGTCACGCG
TTAAAATCAAGAATGAACAGCACACTGTGAAAGTGCCTTCGCTGCTCGCA
CGGAAGCGTTGAGTGAGAGAAGTCGTTTAATGTCGCTTTCCAGTGGTCGT
GTCTCTCC back to topCoding sequence (CDS) from alignment at CM002457.1:220549..223006+ >rna1277 ID=rna1277|Name=rna1277|organism=Nannochloropsis gaditana|type=CDS|length=1644bp|location=Sequence derived from alignment at CM002457.1:220549..223006+ (Nannochloropsis gaditana)
ATGGGTAATGACGTCTCGGAAGACTGCGCGCTGCGTAAGGCCATGTTAGC
GGATGAAGaccgtttcccctcctcgccctcgtctgTGCCCTCAACGCCGT
CTtcgccctcgtcgtcgtactctctctcctccgagaGCGAGCATGAAACG
GAGGATGCGCGGAGAGAGCGGTGGGATGCAAACAGGAAAACTAGGAAGGC
TCATGTTTTCAGAGAAGCGCGCAGAGAGTGCGATgagggtgtggaggagg
aggagaaggaggaggacgaatgGATCCAAGGGACCGTGGCGAGCAGGACT
GGCGGCCGGCATGGAAGCGGAAGCAAAAAGAAGAATCGAAAcagcaggaa
gaaagggcccaagctgggaagagggggcgcaGGCGTGGCCATTGAGCATG
GCTGCAGCAGCTCCCAgaccaaggaagaagagctggcCTCGTCATTGCCC
GCGTGCCCCGCGGATATCCCGACTTCTAGGCTACTCCACACCGgccccct
tcatcccttgCCCAGGATCGGACAGCACGGACGGAACAGGAGCAGCGACA
GCTGTAGCCTTGTCGACCGCAGTGGCAAGGGCGTGCTATCGGCGGCGGCG
CtcgcggcgacggcgacggcgaatGGGTCCATCGCCGTCCCCTTACCCag
cgccgctgcctcctcctcctcttcctcaaccgAAGTTGCTGCCAAGCACA
AAGCCGCGGGCAAGAAAAGGGTGGAATGGGGCCAGGTAGTAGTGCGTCGG
TATTTCCGGATGCCATCCCCCCACAGCGTCCCCGTCCGAGGAGCCTGGCC
CCTGGGACTTGGCGCTGAGGACGGACAACCGCCCTCACAAGTCTCCGTGG
ACGCATACGAGCGACAAAGACAAAAGGAACTGGAGCGGCGGTGGCAGGAG
CTCCCGAAGCGGTTGCGGAAAACGGTGgggtgtggagagggagggttgga
aaGCCGGCAGTACGACTATAAGGCTCCGGAAGAGCGTAACCCGTTGTTTG
GGCCCATGGAGGAACGCAGGCGGAAACTTACCCTGCTCCAGGCTTTGGAA
agcatgggggaggaagggtccggaggcgggaaagaggtcAGCTCGGACTC
GTTGAGCAGCAGTCCCTGCGGTTCCCCCAGGAAAACCACCCTGGCGGCAT
CCCTCTATCTCAGCCGGTACCAGGCAtgggaagagcaggaagaagcGCGG
AGTCGGGAACTGGACGAATTGCGGGCGTCGCGGAAGCAGATTGGATGCAG
CTGTCACCACACGGCCAAGGCGCCGGAGAAGCTGTCTTTGAAGAAactga
aggaggagctccaCCGCCGGCACCTGAGCGCCCCTGGGACCGATAAAGCC
ATGCTGTTGGAGATGCTCAAAGAAGCGctgcagaaggagaagctgtGCAG
CGGTGGGGAAGGCCCAGATGCGTGTGAATGCTTCATAGCAGGCGTTCCTT
GCCACGCGGACGTCTGCGGGTGCTGtgctggaaaaagggggaaaggaggg
ggaagcgggggcgggaaaagccACCACGATTGTCGAAACCCGGTGGGAAA
TTTCTTGTACGAGGAAGCCTCTGTCCGAGGCCATCGCTTTGAGTACTTGA
CGGCGGTGCCGGTGGGCCCACGGCcgcgcagctcctccatctAG back to top
|