rna1273, rna1273 (mRNA) Nannochloropsis gaditana

Overview
Namerna1273
Unique Namerna1273
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1984
Alignment locationCM002457.1:208327..209522 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100042g18.5636.mrna
Orig protein idgnl|cribi|Naga_100042g18.5636
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:208327..209522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100042g18gene1227Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1273rna1273-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29389.1cds1271Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1273 ID=rna1273|Name=rna1273|organism=Nannochloropsis gaditana|type=mRNA|length=1984bp
ACACCACAAGGCCATATCCACGTGTTAGAACGACCCTTGCTTGCATGCCA
TGAATTGACTACTCTTTGTTTTCCAACGCAACATCTTTTGATGTCGAATG
GACGACGTGGGACGATGGAATTGGTGACTTGGTGGAGGAAAAGGTTGCTT
CGGGAAAAGATATCTTCCGATCCGATGATGAGAGAGATATCATGCAGCAC
ACAACATTCGGGCACACGCGATGTTAGCGCGGCTTTCACGCGCAAAGGGA
TTGCGTCAGGACACGTGCCATGCATACTGCAAAGTCAATGAGCTTTTAAG
ATGACGCTTCCAGGACAAAGCTTTTTCAGTGCATGGTGTTGTGGAATTTT
CAATGCATCAAACTACAAGATCAAGCAGAACAGCCCTGCTTCATCAAGTT
GGTCACCTCCCTTTTTCTAAAAAAATCCCTACATTCTCACCATTCAGGGC
ACGGTTACTACGAGATAGGCCAACCATGCATCGCAACACTCATGTGGTTC
TTGGGAGAGTGTTTTGTGTCGTTGCATTGCTGACTTCGTCCACGGGCGCG
CAGCCTCTCTCTGGATGTGGGTTGGGCGAAACCCGGCTATATATCCAAGT
GCACGGCACTGATAAATTGACAGCATGCACGGACTATTTCGACAATGTGG
ATCCTTACGCAATTGTTAGTGTCGGTCAAGACCGCCTCGCTGTCTCCAAA
GTGACAAGGACCGTTGACAACGAAGCTTCTCCCAGCTGGAACCAAGTTCT
AGAGTTCGGGTGCGTAGAGTCTAACACCAAACTCACCTTCCGAGTGCGCG
ATCAAGACTACTTCGGGGACGAGGCATGTCTGGGGCCTTTGCGCCTGATG
GGGCCGTGGCCGCCCTCCGGTCGTCGACAGGTCTTGTGCGAAAGCCCCGC
CATGGACCCCGTCGTGGCCGGGACGCCTGGCACGGGTTGTATCTCCTTTA
CCCTCTACTACGGCTTGGGTCTGCCTTCCACCATCGTCTCGGGGGACGGG
ACCCGGACCAGCACCGCCAACACCACGTCCTCCCTCCGCCCCTCGACCAC
GCCCTCCCTCCCGTCCACCTTGCCCTCCCGCCCTGACACCCCATCGTCGC
CCCTTCCCTCCGTAGTCACGCCCCAGGCCAACGTCAGCACCTCCCCTGCC
GAGAACAGCGACCCTCACGTTCCACCCCCTCCACGCGCTCCCAGCCTCCC
TCCCTCCTCCCAGTCCTCCCCCTCTCCCTCCTCCACCTCACCCCGCCCCC
CGCTCGTGCCATCGGCTCCGGGCATGGACCATCCGTCGGTGGCAGTGCGT
GCCCCGGCGCCCATGGGCCCGGAGGCGAGCAAAAACACAAGGCATCGCTC
CCCCAAGGCAGCCCTTCTAGCGGGAGGAATCATCTCGCTCGTGGCCCTGG
TGGGGATTGCCGCCGCGGTGGCGGTGACGCGCCGGCGGCGTCGACGGGCA
GCGGTGCACAACCAAGGGCTGGAGGTGGATGGGACGGAGAGTGGCGTCCG
CGGGGCAGGGGGAAGCTCTGCCTTGGGGTCGGCCGAAGTGCTGTGAGCCC
AACGGGGCTGCTTGCTGATTGGGAAGAAGGGAAGAGTAGAGAGGAAAAGG
CAACGCTGAAAGGCATAGGGCAAGAAGAACGTTGATTTTGACGTGTAGAA
CGGGAGACAGGGGCCCATATTGCGTCCGAGCGATGGATGTGGAGGGGAAA
TGGTGCCGGAGGCATCACTGCATGGGCGTCAAAGGACTAGATGCGGCGAC
CTGCAACGAGAAGAGGGAGGCGAAGGGAGTAAGGGGACGGAGGCAGGTGT
GAAAATTTTACAAGTACAAAGACTAGCGGCGAGAGAACACGGTACCATGT
GGGCAAGACGGGCATTGTGATGTGGGGACGGGTGGGTGTGAGAAAGCAAC
AGACACACGGGCGCCAAGAGGGGAGATGCTGCGAGAGAGGAGCAACGTTC
ACCAACAAAGAAGAATCTGGTGCATGTCATGTCT
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protein sequence of rna1273

>rna1273-protein ID=rna1273-protein|Name=rna1273|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MNTVQSVNAGWAAFAFATLSGAYMGWRRFLKEDAERKVEWERIQVLENEK
LRREAEALAKLASERKAARQREQSAKPIKSRPSRKPLSETVGISASSTPA
PAAPVPLSTSLRHRITAKILQSEEEEVHGAEDDMTTARNPSFHAKLVEND
ASGWGEARVVTITEQPPAAFIVNQGTGGSDKIEP
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mRNA from alignment at CM002457.1:208327..209522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1273 ID=rna1273|Name=rna1273|organism=Nannochloropsis gaditana|type=mRNA|length=1196bp|location=Sequence derived from alignment at CM002457.1:208327..209522- (Nannochloropsis gaditana)
GTGCAACGAGAAGGGGAAACGAGCTTTATCTTTACTACGTCAGCATTTTA
TGCCATTTGCTTCCATAAATGTGATAGTAAAGAGCTCGTTGTTATTTTTC
CAAAGCCATGTACATTTATTAGCACTGCTTTTGTGGGAAGGGTTGAATGC
GAGGGTAGCTGCGCTCGTCACAACAGCCAAGGCTCTTACTGACTACGAGA
TGGATTGTGCCGATTGAAACTTGTGCACAAGTACACGCTTCTTCGTGGTG
GATGATACATTATATGCGAATCTGCAGGGTTGCAAGTAGATTAAGGAAGA
ACGTGTGATAATCATAACCTTCCTATTTTTTTTAATGCTTTTAAAATGTT
GTCAAAGAGCAAGTTGAAGGTAATCAACCCCGGACACCCCATCAACTGAT
CAAACCACGATCAACCACGCACACACAGTGTGTTGAACGCTACACAGTTA
ATGAACACCGTGCAAAGGTACGTGACCCTTTGTGCGTCTTGTCTCCCGGT
TGTTTTCTAATTCAAAGCTGTCCAAACCCGTCATTGCCGGCCTCTGTCAT
CCAACCTCCCATATACTCTCCTTAGTGTCAATGCCGGGTGGGCGGCTTTC
GCCTTTGCAACATTAAGTGGGGCCTATATGGGATGGCGACGGTTCTTGAA
GGAAGATGCTGAGCGGAAAGTGGAGTGGGAGCGTATCCAGGTTCTCGAAA
ACGAAAAGCTTCGAAGGGAGGCCGAAGCCCTTGCAAAACTGGCGTCAGAA
CGAAAAGCAGCACGGCAACGGGAGCAAAGTGCCAAGCCAATAAAAAGCCG
GCCTTCACGAAAGCCTTTATCAGAAACCGTGGGTATTTCCGCATCGAGTA
CTCCAGCACCAGCTGCCCCTGTCCCCCTTTCCACGTCTCTCCGGCACCGG
ATCACGGCGAAGATCCTCCAAAGTGAGGAGGAGGAGGTTCATGGGGCAGA
GGATGATATGACAACCGCGCGCAACCCGTCTTTCCATGCGAAACTGGTCG
AAAATGATGCCAGTGGCTGGGGAGAGGCCAGAGTTGTCACGATCACGGAG
CAACCGCCAGCTGCATTTATTGTAAATCAAGGTACAGGGGGAAGCGATAA
AATCGAACCATAAAAATGAAAGGAAGCGCTCGCCGCGGCCAATAACAAAA
GCAAGACATGACATGCACCAGATTCTTCTTTGTTGGTGAACGTTGC
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Coding sequence (CDS) from alignment at CM002457.1:208327..209522-

>rna1273 ID=rna1273|Name=rna1273|organism=Nannochloropsis gaditana|type=CDS|length=1110bp|location=Sequence derived from alignment at CM002457.1:208327..209522- (Nannochloropsis gaditana)
TGTCAATGCCGGGTGGGCGGCTTTCGCCTTTGCAACATTAAGTGGGGCCT
ATATGGGATGGCGACGGTTCTTGAAGGAAGATGCTGAGCGGAAAGTGGAG
TGGGAGCGTATCCAGGTTCTCGAAAACGAAAAGCTTCGAAGGGAGGCCGA
AGCCCTTGCAAAACTGGCGTCAGAACGAAAAGCAGCACGGCAACGGGAGC
AAAGTGCCAAGCCAATAAAAAGCCGGCCTTCACGAAAGCCTTTATCAGAA
ACCGTGGGTATTTCCGCATCGAGTACTCCAGCACCAGCTGCCCCTGTCCC
CCTTTCCACGTCTCTCCGGCACCGGATCACGGCGAAGATCCTCCAAAGTG
AGGAGGAGGAGGTTCATGGGGCAGAGGATGATATGACAACCGCGCGCAAC
CCGTCTTTCCATGCGAAACTGGTCGAAAATGATGCCAGTGGCTGGGGAGA
GGCCAGAGTTGTCACGATCACGGAGCAACCGCCAGCTGCATTTATTGTAA
ATCAAGGTACAGGGGGAAGCGATAAAATCGAACCATAAATGAACACCGTG
CAAAGTGTCAATGCCGGGTGGGCGGCTTTCGCCTTTGCAACATTAAGTGG
GGCCTATATGGGATGGCGACGGTTCTTGAAGGAAGATGCTGAGCGGAAAG
TGGAGTGGGAGCGTATCCAGGTTCTCGAAAACGAAAAGCTTCGAAGGGAG
GCCGAAGCCCTTGCAAAACTGGCGTCAGAACGAAAAGCAGCACGGCAACG
GGAGCAAAGTGCCAAGCCAATAAAAAGCCGGCCTTCACGAAAGCCTTTAT
CAGAAACCGTGGGTATTTCCGCATCGAGTACTCCAGCACCAGCTGCCCCT
GTCCCCCTTTCCACGTCTCTCCGGCACCGGATCACGGCGAAGATCCTCCA
AAGTGAGGAGGAGGAGGTTCATGGGGCAGAGGATGATATGACAACCGCGC
GCAACCCGTCTTTCCATGCGAAACTGGTCGAAAATGATGCCAGTGGCTGG
GGAGAGGCCAGAGTTGTCACGATCACGGAGCAACCGCCAGCTGCATTTAT
TGTAAATCAAGGTACAGGGGGAAGCGATAAAATCGAACCATAAATGAACA
CCGTGCAAAG
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Synonyms
Publications