rna1269, rna1269 (mRNA) Nannochloropsis gaditana

Overview
Namerna1269
Unique Namerna1269
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1484
Alignment locationCM002457.1:198450..199643 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100042g22.5642.mrna
Orig protein idgnl|cribi|Naga_100042g22.5642
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:198450..199643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100042g22gene1223Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1269rna1269-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29395.1cds1267Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1269 ID=rna1269|Name=rna1269|organism=Nannochloropsis gaditana|type=mRNA|length=1484bp
GTGTTTGCAAGCTAGTAGCTGGCTTAGCGTGGCCTGATAATAACTCTCAC
CTGGTGCCTTACAATCCGTCAACAAGTGGTGAGCAGCCAGTTCTCGATGC
GATATGGCACCCGTCGGGACGGAAACCTCGTCGACCATAACGACGAGTCC
AGCTGGATCAGCAAAAGAATTACGCGACATCGGGCACGAGGCGGTGTGGT
CTCTCTCAACCGCAAAACCCGGCAATGGAGTCGAGCAAATCAGGGACGAC
GACATGGACACCTATTGGCAATCGGACGGGGCACAACCTCATTTAATCAA
CGTGCAATTTCACAAGAAAATGACCATCCTGGAGGTGTCTCTGTATCTTG
ATTATAGCTTGGACGAGTCGTACACACCGAAAAAAATAAGCATCAAAGCA
GGTACAACTTTCCATGACCTAGTGGAGATACAGACAGTGAATTTGAAGGA
ACCTCAGGGTTGGGTAAAAGTGCCGGTGCGCAATCCATACGCTGACAGAC
CGTCAGGGGTGGACACGGTTGGAGATGCGACTGCGGGCGATCCCGTGGGG
GGGGTGCTTCGGGCCTTCTTTTTGCAAATTAGTATCATTGCCATGCATCA
AAATGGCCGGGACACGCATGTCCGCCAAGTCAAAGTCTATGGTCCCCGGT
ACTCTCAGGCATCATTTTGTAGCCACAGTCGGGTAGAAGGCATCGCCAGC
CTGGATACATACGGTACAATGCCCGAATTTACCTCTGCAGAACTAGCGCA
ATTTTCGACTGTAAGATAAGCAAAGCTAGGTGAGCATAAAAGTGTTCGCA
AGTAGACAGGTCCATGGGCGGGAAAAAGACGACGCGTCCCATTTTTGTAG
GACCCGCTTCTTGTTTCCACAAAGGTTGTCCATGCGCTTGTGCTGCCGAG
CTCGAGCGCGCAATCTTGAAGGAAGATGAGGGCAAAGGGCTTTTCGGCTC
CACGTCTCTTCGGAAGAAGACTGGGGCTGTTCGCTCTCGAGCTCCGGAGC
TGTGGGACTCAAGAGATTCTTGACGTGATAGGAACCTCTTTTGCCCGAAC
TGTGCTCGACTGTCGTTCGAATCAAATCAATTATCGGGGTACACACGGAT
TTTTACGGCCCTCCCCCCCCTCTCTCCACCCGCGCGGGGAAGAAGATATG
ATCAGTGTCACAATAACTGTGGGGAGTTCGGTCGTCGTATTAGCATACTG
AATTGTTTTGTACAGAAATCGGGCCATAAGTTTATCCGCAGGCTGAAGTC
GGAGACCATGAGTGACAAAGCGATAAGGAAGAGGAGCATACATGGAACGG
TTCCAAAAAATTATCCGCGTTGGTTGGGTCCTCATCAATGGCTCCTTTTC
CCACCTCAATTCCAAGTGCTGGGTAGTTCTTTTCCCTCTTGTAATTCAAT
GCACTTCTTACGCAAACTGTTTAGCGAGGGCACTATCTCTGCTCTCTTGC
TTTCTTCCCACCGACTCACTCGTCACCGGTCAAG
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protein sequence of rna1269

>rna1269-protein ID=rna1269-protein|Name=rna1269|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MSTVPSDQTSAPPSQARRSFLQAPLHAPTTGSSLLYPPAALHPPATETWG
ENANAGKLEGGGGREGGQENEPRRGPGWEPRYNASLASELQESTLLTSRM
GGGMSTSMSLLGADSISLSMLQSAMGGMPSLYLGQSTAFGAGASTFLGTA
SFSGLNGSTIQGDPRESISLPGAPPFFTSPHLPPPLPRRGDETANAIPAT
IMEGSHITECDASALAESES
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mRNA from alignment at CM002457.1:198450..199643+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1269 ID=rna1269|Name=rna1269|organism=Nannochloropsis gaditana|type=mRNA|length=1194bp|location=Sequence derived from alignment at CM002457.1:198450..199643+ (Nannochloropsis gaditana)
CCTGGGTGCCGTCGTTAGCCGCCAgtgtcctcccccagccGATGCTCACG
GCCACCTTATGTTCCCTACACCACCTTGCTTGCAGACCAGGTTCCCTTGG
ACGGCGGGCCTGGGTCACCTGACGACCAagacccctccatctccgccttg
GGTGACGAGGTAGCTGCGTTCCTGCCCTTCAaacccccgccctcccccgc
gcaaAGCCGAAGCTTGtggccgtcccctccccaggcccatcacctccacc
atgcTTTTCTACGACATTCCCTCGATAGTAAttcagagggaggaaatgac
cGCGCAAACAGGCCCTCTCCTATTTTCACGCCCTTGGAGATGAGCACCGT
GCCCTCCGACCAAACCTCTGCGCCGCCCTCTCAAGCACGGCGCTCATTTC
TTCAAGCACCTTTACATGCCCCGACAACTGGATCCTCCCTTCTCTAtcct
cctgcagctcttCATCCCCCTGCTACAGAGACATGGGGAGAGAACGCCAA
TGCTGGaaagctggagggaggaggcggcagggagggaggccaagaaAATG
AGCCAAGACGAGGACCGGGTTGGGAGCCACGGTACAATGCCTCCCTAGCA
AGCGAATTGCAAGAAAGCACCCTTTTAACGTCGAGGATGGGCGGAGGcat
gtccacctccatgaGTTTGCTCGGTGCGGATAGCATCAGTCTCTCCATGT
TACAGTCGGCGATGGGgggcatgccctccctctatcTCGGTCAATCCACT
GCTTTTGGTGCAGGAGCCTCTACTTTCTTGGGAactgcttccttctccgg
ctTGAATGGAAGTACAATCCAGGGGGATCCTCGAGAATCGATCTCTCTTC
CTGGAGCCCCGCCATTTTTTACTTCGCCgcatcttcctccgcccttgcCT
AGGAGAGGAGATGAGACGGCGAATGCCATTCCGGCAACCATCATGGAGGG
CTCCCACATTACTGAGTGTGACGCCAGCGCTTTGGCAGAGTCAGAATCGT
GATCATCGTCAACATGAGTATCTTGCTCATGGATCTTTTGTGAAAAAGTG
TTCAAAGAAGGCGTTGAGAAATGATTAAATGTATCAAATGAAGACTTCAG
GATATTTTTGAAAATTACCCTACCCGCCACCATGTATTTGTGCATATACT
GGGAAAATCTCACATCAGTATACAAAATAGCCTGTAATTTTGCA
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Coding sequence (CDS) from alignment at CM002457.1:198450..199643+

>rna1269 ID=rna1269|Name=rna1269|organism=Nannochloropsis gaditana|type=CDS|length=663bp|location=Sequence derived from alignment at CM002457.1:198450..199643+ (Nannochloropsis gaditana)
ATGAGCACCGTGCCCTCCGACCAAACCTCTGCGCCGCCCTCTCAAGCACG
GCGCTCATTTCTTCAAGCACCTTTACATGCCCCGACAACTGGATCCTCCC
TTCTCTAtcctcctgcagctcttCATCCCCCTGCTACAGAGACATGGGGA
GAGAACGCCAATGCTGGaaagctggagggaggaggcggcagggagggagg
ccaagaaAATGAGCCAAGACGAGGACCGGGTTGGGAGCCACGGTACAATG
CCTCCCTAGCAAGCGAATTGCAAGAAAGCACCCTTTTAACGTCGAGGATG
GGCGGAGGcatgtccacctccatgaGTTTGCTCGGTGCGGATAGCATCAG
TCTCTCCATGTTACAGTCGGCGATGGGgggcatgccctccctctatcTCG
GTCAATCCACTGCTTTTGGTGCAGGAGCCTCTACTTTCTTGGGAactgct
tccttctccggctTGAATGGAAGTACAATCCAGGGGGATCCTCGAGAATC
GATCTCTCTTCCTGGAGCCCCGCCATTTTTTACTTCGCCgcatcttcctc
cgcccttgcCTAGGAGAGGAGATGAGACGGCGAATGCCATTCCGGCAACC
ATCATGGAGGGCTCCCACATTACTGAGTGTGACGCCAGCGCTTTGGCAGA
GTCAGAATCGTGA
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Synonyms
Publications