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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100042g35.5665.mrna |
| Orig protein id | gnl|cribi|Naga_100042g35.5665 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:172938..175014 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1261 ID=rna1261|Name=rna1261|organism=Nannochloropsis gaditana|type=mRNA|length=1842bp
TGTTCATTTCTACTCTTTTCGACTTTGCTGCTTCCCAGGACTCCGACTAC
ACGCACAAGCTCCCGGCTCCGTTATCGTCTTCAACACCACGTGCATCTTA
GCTAAGCAACTCAGCATCGTCACGATGAAACGCGACTGTTGCATCGTACT
AGTTCTTGTATCGATTCTGAGCCTTATCCCTGCAGATGCTTTTCTGGTGC
CTGCGTCTCCGTTACGGGCGCAAGCTTCTAGCCTACTGACCATGGAAGCG
ACAAAGGACCCTCAAACCCCCGGTAGCCCGTGGATCAACCTCCCTCGGAA
AATCCTCGCTCCTGCTACGTTGGCCTTTGCAACCTGGCAGTCAACCTTTT
CCTTCCAACCGGGCATCCTGGGGGCTTCCTCTTCCGTCTTCCCCGGCTTT
GAAACAGTCCAATCGGCGCACGCGGCCCGGCCTTCCAACGCGCCCTCGTC
AGCAGGCAGTCGGGTGAACAAGGACGCGGAGTCCCTCCTCAGGTATGGCC
TGCCCATTAACAGCAAGGAGGCCCGTGAGCTGCAAGAAGCCGTTGAAGGT
GTCAAGGAGAACATCCGGGGAAAGCGGCTGAACGAAGGGAAAAAAGACGT
GCAGCGAGCCAAGTCCATCCTGGCGTCCAAGAGGGAGAAGCTCCTCAAAG
CCGTCCGACCGGACGGAAAGGAACGGGCACAGGAACTGTTGAAAGAACTG
GAGGGGAATCTAGACGAGCTGACAGCGACTTTTGCGGAGGACGCCGGGAG
AGGTTCGGAGCAGGAACGTGCCAAGCTGGACTTGGCCTACAAACAGCAAT
TGGACGCCTCTCGAGCTGTCACTGAGGTGGAGGAGTTGATGGTCCCAGCT
GGGTATACTGTTTCGGTGCCTGAAGAATTTAGCAACCTTCCTCAGTTGCA
AGGACGGGCGGAAGTAGACATGGTGTTGAAGAAAGGAGAGGCGGGGGAGA
AATTTGAAATCAAAGGGAAGCTCTATGATTCCATCCAGGTGAAAATGGTC
ATCGATGGATTCAATGCCCCCGTGACGGCGGGAAATTTCGTAGACCTGGT
GCAGAAAGGTTTCTACAACAACAGGCCTATCACGCGAAGCGATGGATTCG
TGGTTCAATACGGCGATCCGGATCCTCAGGGGGAGGTGCATGGTTATGTC
CCCTTCGGGTCTAAGGACGTTCGCACCATCCCATTGGAAATTTTTGTGGC
ACAAGACGAGTCGCCCATGTACGGTATGACGACGGAGGACGATGGACGCG
GCTACAGTGCCACCCGTTTGCCGTTCCAGGCATACGGGGCGATTGGCATG
GCCCGCGAGGAATATGTGGCAGATTCCGCGAGCAGCCAGGTTTTTTGGTT
GCTGTTTGAGAGCGACTTGACTCCCGCAGGCAAAAATTTGCTGGACGGTC
GTTACACTTGCTTTGGCTATACCACGGAAAATGCCGATTTGCTTGCTGGC
GTGAAGGAGGGCGACGTGATTGTATCGGCCAAGGTGGTAAAAGGAGGGGA
GAATCTCGTGAAAAAATAGACGAAGGAGAGATGTGAGGAAGGGGAGCAGA
TAGGATTTGAGGGTGGTAGGAGGCAGGACAGGAAAGTTGATGATTGACTG
ACTTAGTTTTAGCTGTCTGTGGGGCGCTTTATGTGTGGTGAGCAGCGTCA
CAGGCTACACAGAAACAGTGTTTGCTTTCGCAAAGAGATAATTGAAACCA
ATGCAAATGCTTCAGGATTTTCCGAAACCACATGAAAGAAAATAGAAAAA
AGCATTCGTACCAGCATCGGCGGGAACGCCCGCAAAGAAAGAGGTTTCAG
GACGTTTTTTACGGTGTTATAGCCCCCTGAATTACTGCCACA back to topprotein sequence of rna1261 >rna1261-protein ID=rna1261-protein|Name=rna1261|organism=Nannochloropsis gaditana|type=polypeptide|length=618bp
MLHQRGRATPALMCLLFLLLFAQPAASAMASEAFIQPAASSCGSSFQASA
PGKISSAFLCGPTSSQIASPLANFLERPVSQEAGRTRQQTMALPSIGRIL
TAVPRFVGRKIMDGGDAIYVKKSLFLPPGSRSSGTSSPQEDTSSQPPTSV
EADMVLVLFPGIGMGPAAYRETALAIQDALAANYDVKAYVVVAKFFNNLG
YLPQEPERRLASILTEVSLRGVSARAPVAVAGHSAGAFLAYEAALTRSQA
FVHLGSTLNSRGVLPWKPRSVLAFPKPILQLLGEMDGYIRFTGGALEYAE
VESLMAKKGFEDALLDKPVVLLPGVSHQQFGDGSQSKAARMSGRRDLPPY
VALQEAHRMTGKIVASFLAYHLFPLNGRARVAGASVLRQAFEATGRMVRP
YLDESTPQAEDDFIRWAQAEVASVEGVGRNSVRALLYESEGEFVYSKPFL
DTESEYLQVCVRKVQEAAIRIGFTKQISPALDFKMKRQEAVVQALRRYPS
KKAPTAAELNHRTFQKALEKVSEEARRRYDRYGRKLEFIADDEITAERGG
GPAWVATPLEVKARVEDPMRVTVRSPVLYTPIDTLPRFAGMCYMKLLTPA
QAVEWICHDAYVPWGTPK back to topmRNA from alignment at CM002457.1:172938..175014+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1261 ID=rna1261|Name=rna1261|organism=Nannochloropsis gaditana|type=mRNA|length=2077bp|location=Sequence derived from alignment at CM002457.1:172938..175014+ (Nannochloropsis gaditana)
CATCCAATAAAGTTTCCGGTGAGATCAGGGATTGGAAACCTCATATTTTC
GTTGATTTCCGTACAAGGACAGGGGGATTATATCATGCTTCATCAGAGGG
GACGGGCCACACCAGCACTCATGTGCTtgcttttcctgcttttgtTTGCA
CAGCCTGCGGCAAGTGCCATGGCGTCGGAAGCATTCATTCAAccagctgc
ttcttcctgtGGCTCATCATTCCAGGCCAGCGCCCCGGGCAAAATCTCAT
CCGCTTTCCTCTGTggcccgacctcctcccaaatagcctctcccctcgct
aATTTTCTCGAGCGGCCTGTATCACAAGAAGCGGGACGCACAAGACAGCA
GACCATGGCACTACCAAGTATTGGAAGGATTTTGACGGCCGTACCCCGGT
TTGTTGGCCGCAAAATAATGGATGGTGGGGATGCGATTTATGTCAAGAAa
agtctctttcttcccccggGTAGCCGGAGCAGCGGAACATCGAGCCCTCA
GGAGGACACCTCTTCCCAGCCTCCAACTTCTGTTGAGGCAGACATGGTGC
TTGTTTTATTTCCCGGCATTGGCATGGGTCCCGCTGCTTACCGGGAGACC
GCGCTGGCCATCCAGGATGCTCTGGCTGCAAATTATGACGTGAAGGCCTA
CGTGGTTGTGGCCAAATTCTTCAACAACCTCGGCTACCTGCCTCAAGAAC
CTGAACGCCGTCTAGCGTCCATTCTGACGGAAGTGAGCTTGCGAGGGGTT
TCGGCCCGGGCCCCTGTGGCCGTCGCAGGGCACAGTGCGGGGGCTTTCCT
TGCGTACGAGGCCGCGCTCACACGATCCCAAGCTTTCGTGCACTTGGGGT
CCACACTAAACAGTCGGGGCGTTCTACCATGGAAACCCAGGAGTGTGCTT
GCTTTCCCCAAACCCATCCTCCAACTGCtgggggagatggacggCTACAT
TCGTTTCACCGGCGGGGCCTTGGAGTACGCGGAGGTGGAATCCTTGATGG
CCAAGAAAGGCTTCGAagacgccctcctcgacaaacccgtcgtccttctc
cccggtGTCTCCCACCAACAATTTGGTGACGGCTCTCAGTCCAAAGCCGC
GCGCATGTCGGGCCGGCGGGACCTACCGCCCTACGTCGCTCTCCAAGAAG
CCCACAGGATGACGGGCAAGATCGTCGCCTCTTTTCTGGCCTACCATCTC
TTCCCTTTGAACGGACGGGCCCGTGTGGCAGGTGCCAGTGTCCTCCGCCA
AGCTTtcgaggcgacggggaggatggtgcGCCCTTATTTGGACGAGAGCA
CGCCTCAGGCGGAAGACGATTTTATCCGGTGGGcccaggcggaggtggcT
TCCGTGGAAGGCGTGGGAAGGAACAGCGTGCGTGCCTTGCTCTATGAAAG
TGAGGGGGAATTCGTTTACTCGAAGCCTTTTTTGGACACGGAAAGCGAGT
ATTTGCAGGTGTGCGTTCGGAAAGtccaggaggcggccatTCGGATCGGC
TTTACCAAACAGATCTCTCCAGCGTTGGACTTCAAAATGAAACGGCAAGA
AGCCGTCGTCCAAGCCCTGAGGCGATATCCGTCCAAGAAAGCGCCCACAG
CCGCCGAGCTCAACCATCGAACCTTCCAGAAGGCCTTGGAAAAGGTGAGC
GAGGAAGCCCGGAGGCGCTACGACCGGTACGGACGAAAATTGGAGTTTAT
AGCCGATGACGAGATCACAGccgaacgaggagggggtcCGGCTTGGGTCG
CCACGCCTCTGGAAGTGAAAGCGCGCGTGGAGGATCCGATGCGGGTGACA
GTTCGATCCCCGGTCTTGTACACGCCGATCGACACCCTGCCTCGCTTTGC
GGGTATGTGTTATATGAAGCTTTTGACCCCCGCACAGGCAGTGGAGTGGA
TTTGTCACGATGCATATGTCCCCTGGGGGACACCAAAGTGATAGACCCTT
GTCGATGCTCTTGACCACGGTCTCTGGGTCACTCTCGAACCATGTACAGA
TATTTCGCCTTGACAAAAGCACAGCCCCGCAACCCACCGCATTTGATAAG
AAACCGGATTCTATAAGCGGAACATCT back to topCoding sequence (CDS) from alignment at CM002457.1:172938..175014+ >rna1261 ID=rna1261|Name=rna1261|organism=Nannochloropsis gaditana|type=CDS|length=1857bp|location=Sequence derived from alignment at CM002457.1:172938..175014+ (Nannochloropsis gaditana)
ATGCTTCATCAGAGGGGACGGGCCACACCAGCACTCATGTGCTtgctttt
cctgcttttgtTTGCACAGCCTGCGGCAAGTGCCATGGCGTCGGAAGCAT
TCATTCAAccagctgcttcttcctgtGGCTCATCATTCCAGGCCAGCGCC
CCGGGCAAAATCTCATCCGCTTTCCTCTGTggcccgacctcctcccaaat
agcctctcccctcgctaATTTTCTCGAGCGGCCTGTATCACAAGAAGCGG
GACGCACAAGACAGCAGACCATGGCACTACCAAGTATTGGAAGGATTTTG
ACGGCCGTACCCCGGTTTGTTGGCCGCAAAATAATGGATGGTGGGGATGC
GATTTATGTCAAGAAaagtctctttcttcccccggGTAGCCGGAGCAGCG
GAACATCGAGCCCTCAGGAGGACACCTCTTCCCAGCCTCCAACTTCTGTT
GAGGCAGACATGGTGCTTGTTTTATTTCCCGGCATTGGCATGGGTCCCGC
TGCTTACCGGGAGACCGCGCTGGCCATCCAGGATGCTCTGGCTGCAAATT
ATGACGTGAAGGCCTACGTGGTTGTGGCCAAATTCTTCAACAACCTCGGC
TACCTGCCTCAAGAACCTGAACGCCGTCTAGCGTCCATTCTGACGGAAGT
GAGCTTGCGAGGGGTTTCGGCCCGGGCCCCTGTGGCCGTCGCAGGGCACA
GTGCGGGGGCTTTCCTTGCGTACGAGGCCGCGCTCACACGATCCCAAGCT
TTCGTGCACTTGGGGTCCACACTAAACAGTCGGGGCGTTCTACCATGGAA
ACCCAGGAGTGTGCTTGCTTTCCCCAAACCCATCCTCCAACTGCtggggg
agatggacggCTACATTCGTTTCACCGGCGGGGCCTTGGAGTACGCGGAG
GTGGAATCCTTGATGGCCAAGAAAGGCTTCGAagacgccctcctcgacaa
acccgtcgtccttctccccggtGTCTCCCACCAACAATTTGGTGACGGCT
CTCAGTCCAAAGCCGCGCGCATGTCGGGCCGGCGGGACCTACCGCCCTAC
GTCGCTCTCCAAGAAGCCCACAGGATGACGGGCAAGATCGTCGCCTCTTT
TCTGGCCTACCATCTCTTCCCTTTGAACGGACGGGCCCGTGTGGCAGGTG
CCAGTGTCCTCCGCCAAGCTTtcgaggcgacggggaggatggtgcGCCCT
TATTTGGACGAGAGCACGCCTCAGGCGGAAGACGATTTTATCCGGTGGGc
ccaggcggaggtggcTTCCGTGGAAGGCGTGGGAAGGAACAGCGTGCGTG
CCTTGCTCTATGAAAGTGAGGGGGAATTCGTTTACTCGAAGCCTTTTTTG
GACACGGAAAGCGAGTATTTGCAGGTGTGCGTTCGGAAAGtccaggaggc
ggccatTCGGATCGGCTTTACCAAACAGATCTCTCCAGCGTTGGACTTCA
AAATGAAACGGCAAGAAGCCGTCGTCCAAGCCCTGAGGCGATATCCGTCC
AAGAAAGCGCCCACAGCCGCCGAGCTCAACCATCGAACCTTCCAGAAGGC
CTTGGAAAAGGTGAGCGAGGAAGCCCGGAGGCGCTACGACCGGTACGGAC
GAAAATTGGAGTTTATAGCCGATGACGAGATCACAGccgaacgaggaggg
ggtcCGGCTTGGGTCGCCACGCCTCTGGAAGTGAAAGCGCGCGTGGAGGA
TCCGATGCGGGTGACAGTTCGATCCCCGGTCTTGTACACGCCGATCGACA
CCCTGCCTCGCTTTGCGGGTATGTGTTATATGAAGCTTTTGACCCCCGCA
CAGGCAGTGGAGTGGATTTGTCACGATGCATATGTCCCCTGGGGGACACC
AAAGTGA back to top
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