rna1260, rna1260 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1260
Unique Name	rna1260
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1736
Alignment location	CM002457.1:170439..172488 -

Link to JBrowse

Properties


Property Name	Value
Product	peptidyl-prolyl cis-trans isomerase
Orig transcript id	gnl\|cribi\|Naga_100042g36.5657.mrna
Orig protein id	gnl\|cribi\|Naga_100042g36.5657
Gene	CYN
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:170439..172488 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CYN	gene1214	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1260	rna1260-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29410.1	cds1258	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:170439..172488-
coding sequence from alignment at CM002457.1:170439..172488-

mRNA sequence

>rna1260 ID=rna1260|Name=rna1260|organism=Nannochloropsis gaditana|type=mRNA|length=1736bp
CATCCATACCCTCCATACGCCCAATGAGCCGACCATTTATTGGTACAGCT
GCTCTGGAGAAGTGTTGACACATTGGGTGCGACGCTTGTGTATCTCAGGC
CCTATTTCATCATATCTCGTCATATATATTGCAGGTGTCGACGCAACTCA
TGCCAATAATAAAGCGTAAATAATAGAATAGCGTACGGTATCGACAACAG
AATTGTCATGATTAGGACGGTCACGACTTCTTTGGAAACTTCATTGTCCG
TCCTTTGCTTGGGTTCGGATGGTCTTGTTTTAGATGAGTCGCTGACCTCT
GCCCCGAGTATGTCTTCCAGCGCCTTCAACCAAGAAGAAATCTGCCTCTC
AAATCTGGGAGCCATTCGAAGTAATCCCGGACAGTACCTATGGAATCTAC
GTCTTCCCTCAGCAGATGAAATGCTGCGCGAACTCGAGGCTGTCTTGGAA
CTACCCGAGTCTCTCTCATCCAGCACTTCTTGCAAGGTGGTCATACACTC
CTCCTGTCCTACCTCTCGCGACCGTGAGCCCTTGAGTCGGCTGGCCGCCA
GGCTTGAAAAAAAGAATATTATGGTTGTGACAGGTGTCCTGCCATCCGAC
TGCCAAGGCTCCTCCACTCCCGAAACTATGGCCACGGACCTGGTTCATAA
GCTCAAATTTGGCGTCGAAGTCTCATCCCCAGGGCCAACCAGCGGGACCT
TACCTGGGTTGCCAGGGCCGACGAGCGCCCTCGTTCCTTTGAAAATGGAG
CGGATCGGGATGGGATTCTTGGGCCTGGTAGATTTGCCTGCCTTACGAGG
AGGAATCTCGGAAGAAGAGGGCAAGAGACTAGAGGGCGTCCTCCTCAAGG
CCATGGGCATGGCCTCCCGCCTCTGTCAGGGCGTTCCGATCTTCCTGACC
ACCCACGACGTCTGGGGGCAGGAAGCATTTTCGGAAAGCAGGGCGCTAAG
CATTATTGATGGTGTGCACGCGGGTGGCGCCAAGCACGCCCCCATAGTCT
TTTGCCGTTGCCCGTGTCACGTGCATCTTCTCCGGTCCTACGCGGCTATT
TTAAAGTATGACGACCAAGTCCATCTCTCCTTCTCCTTCCATGGTAATGC
TTTCTATGCGTCCCCTACTGCCGCTCTGGCCTCCGAGGTTGCCTCGGACG
AGGAAGGCGCCCGGCTTGTAAGCCTCCTGTGCGAGGAGGGCTTCGCCTCC
CGGATTCTCCTCTCCCACACCATCACTTGCCGTCTGAAACTCCAAAAATA
CGGAGGGTTCGGATACACGCACCTTCCCCAGCACATTCTCCCCCGTCTTC
TTCGTCTTGGCGTGTCTCCTTCAGACCTCGCGAGAGTTGGGGGTGGGAAC
ATGCGACGCCTGTTGGCATGGTGGCGCCCCCCTCCCCCAGTGGAGAAGCC
GGTGGAGATTGGAACATGTTCCTGGTGCAAAGCCGCCTTCGAGGTCCGGG
AAAATGCGTATTTCAGCAAATTTGCCTACGTCTACTGCACAAGTCGGTGT
TTGTCCGCCCATGGGGATACGGGCTGGAAGGCATTGGATGACTCGGAGCG
CAAGCCGCCAGGCTGAAAGGGAGAGAGGGCGTAAGCAGAACACGGGAAAA
AGGGATCAGGGTAACAAAGTGGCGAAAAATGTAAGAATACATAACAAGGT
GACATGAGTGCAATGGTGGTTACCGTGTGTGGCAGTAATTCAGGGGGCTA
TAACACCGTAAAAAACGTCCTGAAACCTCTTTCTTT

protein sequence of rna1260

>rna1260-protein ID=rna1260-protein|Name=rna1260|organism=Nannochloropsis gaditana|type=polypeptide|length=464bp
MKRDCCIVLVLVSILSLIPADAFLVPASPLRAQASSLLTMEATKDPQTPG
SPWINLPRKILAPATLAFATWQSTFSFQPGILGASSSVFPGFETVQSAHA
ARPSNAPSSAGSRVNKDAESLLRYGLPINSKEARELQEAVEGVKENIRGK
RLNEGKKDVQRAKSILASKREKLLKAVRPDGKERAQELLKELEGNLDELT
ATFAEDAGRGSEQERAKLDLAYKQQLDASRAVTEVEELMVPAGYTVSVPE
EFSNLPQLQGRAEVDMVLKKGEAGEKFEIKGKLYDSIQVKMVIDGFNAPV
TAGNFVDLVQKGFYNNRPITRSDGFVVQYGDPDPQGEVHGYVPFGSKDVR
TIPLEIFVAQDESPMYGMTTEDDGRGYSATRLPFQAYGAIGMAREEYVAD
SASSQVFWLLFESDLTPAGKNLLDGRYTCFGYTTENADLLAGVKEGDVIV
SAKVVKGGENLVKK

mRNA from alignment at CM002457.1:170439..172488-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1260 ID=rna1260|Name=rna1260|organism=Nannochloropsis gaditana|type=mRNA|length=2050bp|location=Sequence derived from alignment at CM002457.1:170439..172488- (Nannochloropsis gaditana)
TGTTCATTTCTACTCTTTTCGACTTTGCTGCTTCCCAGGACTCCGACTAC
ACGCACAAGCTCCCGGCTCCGTTATCGTCTTCAACACCACGTGCATCTTA
GCTAAGCAACTCAGCATCGTCACGATGAAACGCGACTGTTGCATCGTACT
AGTTCTTGTATCGATTCTGAGCCTTATCCCTGCAGATGCTTTTCTGGTGC
CTGCGTCTCCGTTACGGGCGCAAGCTTCTAGCCTACTGACCATGGAAGCG
ACAAAGGTAACGAAGCTATATGATTTTCCATTGCGTGCACCTACTTCTCA
GTTCGAGGCATCCATTTTTGCATCTCGAGACTTCATAGTAAATGATGACT
TGGCGAAGAATTTCTATGTAAATAAGTATTTCGACGCTGTGTTGTCCTTG
GTATGCCGTAGTCGGTCGTTCTTCGTCTTACCGTCGTCATTTCCCGGGTT
CTAATTCGTCGCAGGACCCTCAAACCCCCGGTAGCCCGTGGATCAACCTC
CCTCGGAAAATCCTCGCTCCTGCTACGTTGGCCTTTGCAACCTGGCAGTC
AACCTTTTCCTTCCAACCGGGCATCCTGGGGGCTTCCTCTTCCGTCTTCC
CCGGCTTTGAAACAGTCCAATCGGCGCACGCGGCCCGGCCTTCCAACGCG
CCCTCGTCAGCAGGCAGTCGGGTGAACAAGGACGCGGAGTCCCTCCTCAG
GTATGGCCTGCCCATTAACAGCAAGGAGGCCCGTGAGCTGCAAGAAGCCG
TTGAAGGTGTCAAGGAGAACATCCGGGGAAAGCGGCTGAACGAAGGGAAA
AAAGACGTGCAGCGAGCCAAGTCCATCCTGGCGTCCAAGAGGGAGAAGCT
CCTCAAAGCCGTCCGACCGGACGGAAAGGAACGGGCACAGGAACTGTTGA
AAGAACTGGAGGGGAATCTAGACGAGCTGACAGCGACTTTTGCGGAGGAC
GCCGGGAGAGGTTCGGAGCAGGAACGTGCCAAGCTGGACTTGGCCTACAA
ACAGCAATTGGACGCCTCTCGAGCTGTCACTGAGGTGGAGGAGTTGATGG
TCCCAGCTGGGTATACTGTTTCGGTGCCTGAAGAATTTAGCAACCTTCCT
CAGTTGCAAGGACGGGCGGAAGTAGACATGGTGTTGAAGAAAGGAGAGGC
GGGGGAGAAATTTGAAATCAAAGGGAAGCTCTATGATTCCATCCAGGTGA
AAATGGTCATCGATGGATTCAATGCCCCCGTGACGGCGGGAAATTTCGTA
GACCTGGTGCAGAAAGGTTTCTACAACAACAGGCCTATCACGCGAAGCGA
TGGATTCGTGGTTCAATACGGCGATCCGGATCCTCAGGGGGAGGTGCATG
GTTATGTCCCCTTCGGGTCTAAGGACGTTCGCACCATCCCATTGGAAATT
TTTGTGGCACAAGACGAGTCGCCCATGTACGGTATGACGACGGAGGACGA
TGGACGCGGCTACAGTGCCACCCGTTTGCCGTTCCAGGCATACGGGGCGA
TTGGCATGGCCCGCGAGGAATATGTGGCAGATTCCGCGAGCAGCCAGGTT
TTTTGGTTGCTGTTTGAGAGCGACTTGACTCCCGCAGGCAAAAATTTGCT
GGACGGTCGTTACACTTGCTTTGGCTATACCACGGAAAATGCCGATTTGC
TTGCTGGCGTGAAGGAGGGCGACGTGATTGTATCGGCCAAGGTGGTAAAA
GGAGGGGAGAATCTCGTGAAAAAATAGACGAAGGAGAGATGTGAGGAAGG
GGAGCAGATAGGATTTGAGGGTGGTAGGAGGCAGGACAGGAAAGTTGATG
ATTGACTGACTTAGTTTTAGCTGTCTGTGGGGCGCTTTATGTGTGGTGAG
CAGCGTCACAGGCTACACAGAAACAGTGTTTGCTTTCGCAAAGAGATAAT
TGAAACCAATGCAAATGCTTCAGGATTTTCCGAAACCACATGAAAGAAAA
TAGAAAAAAGCATTCGTACCAGCATCGGCGGGAACGCCCGCAAAGAAAGA
GGTTTCAGGACGTTTTTTACGGTGTTATAGCCCCCTGAATTACTGCCACA

Coding sequence (CDS) from alignment at CM002457.1:170439..172488-

>rna1260 ID=rna1260|Name=rna1260|organism=Nannochloropsis gaditana|type=CDS|length=2790bp|location=Sequence derived from alignment at CM002457.1:170439..172488- (Nannochloropsis gaditana)
GACCCTCAAACCCCCGGTAGCCCGTGGATCAACCTCCCTCGGAAAATCCT
CGCTCCTGCTACGTTGGCCTTTGCAACCTGGCAGTCAACCTTTTCCTTCC
AACCGGGCATCCTGGGGGCTTCCTCTTCCGTCTTCCCCGGCTTTGAAACA
GTCCAATCGGCGCACGCGGCCCGGCCTTCCAACGCGCCCTCGTCAGCAGG
CAGTCGGGTGAACAAGGACGCGGAGTCCCTCCTCAGGTATGGCCTGCCCA
TTAACAGCAAGGAGGCCCGTGAGCTGCAAGAAGCCGTTGAAGGTGTCAAG
GAGAACATCCGGGGAAAGCGGCTGAACGAAGGGAAAAAAGACGTGCAGCG
AGCCAAGTCCATCCTGGCGTCCAAGAGGGAGAAGCTCCTCAAAGCCGTCC
GACCGGACGGAAAGGAACGGGCACAGGAACTGTTGAAAGAACTGGAGGGG
AATCTAGACGAGCTGACAGCGACTTTTGCGGAGGACGCCGGGAGAGGTTC
GGAGCAGGAACGTGCCAAGCTGGACTTGGCCTACAAACAGCAATTGGACG
CCTCTCGAGCTGTCACTGAGGTGGAGGAGTTGATGGTCCCAGCTGGGTAT
ACTGTTTCGGTGCCTGAAGAATTTAGCAACCTTCCTCAGTTGCAAGGACG
GGCGGAAGTAGACATGGTGTTGAAGAAAGGAGAGGCGGGGGAGAAATTTG
AAATCAAAGGGAAGCTCTATGATTCCATCCAGGTGAAAATGGTCATCGAT
GGATTCAATGCCCCCGTGACGGCGGGAAATTTCGTAGACCTGGTGCAGAA
AGGTTTCTACAACAACAGGCCTATCACGCGAAGCGATGGATTCGTGGTTC
AATACGGCGATCCGGATCCTCAGGGGGAGGTGCATGGTTATGTCCCCTTC
GGGTCTAAGGACGTTCGCACCATCCCATTGGAAATTTTTGTGGCACAAGA
CGAGTCGCCCATGTACGGTATGACGACGGAGGACGATGGACGCGGCTACA
GTGCCACCCGTTTGCCGTTCCAGGCATACGGGGCGATTGGCATGGCCCGC
GAGGAATATGTGGCAGATTCCGCGAGCAGCCAGGTTTTTTGGTTGCTGTT
TGAGAGCGACTTGACTCCCGCAGGCAAAAATTTGCTGGACGGTCGTTACA
CTTGCTTTGGCTATACCACGGAAAATGCCGATTTGCTTGCTGGCGTGAAG
GAGGGCGACGTGATTGTATCGGCCAAGGTGGTAAAAGGAGGGGAGAATCT
CGTGAAAAAATAGATGAAACGCGACTGTTGCATCGTACTAGTTCTTGTAT
CGATTCTGAGCCTTATCCCTGCAGATGCTTTTCTGGTGCCTGCGTCTCCG
TTACGGGCGCAAGCTTCTAGCCTACTGACCATGGAAGCGACAAAGGACCC
TCAAACCCCCGGTAGCCCGTGGATCAACCTCCCTCGGAAAATCCTCGCTC
CTGCTACGTTGGCCTTTGCAACCTGGCAGTCAACCTTTTCCTTCCAACCG
GGCATCCTGGGGGCTTCCTCTTCCGTCTTCCCCGGCTTTGAAACAGTCCA
ATCGGCGCACGCGGCCCGGCCTTCCAACGCGCCCTCGTCAGCAGGCAGTC
GGGTGAACAAGGACGCGGAGTCCCTCCTCAGGTATGGCCTGCCCATTAAC
AGCAAGGAGGCCCGTGAGCTGCAAGAAGCCGTTGAAGGTGTCAAGGAGAA
CATCCGGGGAAAGCGGCTGAACGAAGGGAAAAAAGACGTGCAGCGAGCCA
AGTCCATCCTGGCGTCCAAGAGGGAGAAGCTCCTCAAAGCCGTCCGACCG
GACGGAAAGGAACGGGCACAGGAACTGTTGAAAGAACTGGAGGGGAATCT
AGACGAGCTGACAGCGACTTTTGCGGAGGACGCCGGGAGAGGTTCGGAGC
AGGAACGTGCCAAGCTGGACTTGGCCTACAAACAGCAATTGGACGCCTCT
CGAGCTGTCACTGAGGTGGAGGAGTTGATGGTCCCAGCTGGGTATACTGT
TTCGGTGCCTGAAGAATTTAGCAACCTTCCTCAGTTGCAAGGACGGGCGG
AAGTAGACATGGTGTTGAAGAAAGGAGAGGCGGGGGAGAAATTTGAAATC
AAAGGGAAGCTCTATGATTCCATCCAGGTGAAAATGGTCATCGATGGATT
CAATGCCCCCGTGACGGCGGGAAATTTCGTAGACCTGGTGCAGAAAGGTT
TCTACAACAACAGGCCTATCACGCGAAGCGATGGATTCGTGGTTCAATAC
GGCGATCCGGATCCTCAGGGGGAGGTGCATGGTTATGTCCCCTTCGGGTC
TAAGGACGTTCGCACCATCCCATTGGAAATTTTTGTGGCACAAGACGAGT
CGCCCATGTACGGTATGACGACGGAGGACGATGGACGCGGCTACAGTGCC
ACCCGTTTGCCGTTCCAGGCATACGGGGCGATTGGCATGGCCCGCGAGGA
ATATGTGGCAGATTCCGCGAGCAGCCAGGTTTTTTGGTTGCTGTTTGAGA
GCGACTTGACTCCCGCAGGCAAAAATTTGCTGGACGGTCGTTACACTTGC
TTTGGCTATACCACGGAAAATGCCGATTTGCTTGCTGGCGTGAAGGAGGG
CGACGTGATTGTATCGGCCAAGGTGGTAAAAGGAGGGGAGAATCTCGTGA
AAAAATAGATGAAACGCGACTGTTGCATCGTACTAGTTCTTGTATCGATT
CTGAGCCTTATCCCTGCAGATGCTTTTCTGGTGCCTGCGTCTCCGTTACG
GGCGCAAGCTTCTAGCCTACTGACCATGGAAGCGACAAAG

Synonyms

Publications