rna1250, rna1250 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1250
Unique Name	rna1250
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2156
Alignment location	CM002457.1:143836..147054 +

Link to JBrowse

Properties


Property Name	Value
Product	protein kinase nu
Orig transcript id	gnl\|cribi\|Naga_100707g3.7307.mrna
Orig protein id	gnl\|cribi\|Naga_100707g3.7307
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:143836..147054 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100707g3	gene1204	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1250	rna1250-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29424.1	cds1249	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:143836..147054+
coding sequence from alignment at CM002457.1:143836..147054+

mRNA sequence

>rna1250 ID=rna1250|Name=rna1250|organism=Nannochloropsis gaditana|type=mRNA|length=2156bp
CATCCTGGATGTTCTCCTTCAAAAGACGTCCAGTGAATGAGCAATTTCCA
AGCCATGTGGTGGGGAGTTAGCTCTTCACAGGAGTTCTGATGGGATGGGA
ATTTTTCGACTGCTGCAATGGCGTGGCAACCCCTCTCCTTGAGGTCCGTC
CTACAAGTGGAACAAGTCAGCAAACACCGCACGATGCGCCCTCCGTGGTC
ATGTGCACGTTTGGGAGCATGTCCACAGGCGGTGTATGGGTTAAGGCGAT
GGGTGCCACGTGCTTTGAGGCTCAGGATTTTTCTTTTTCAAAGCTTTGTC
CTGCCCGACCGGCGCGGAAGGGGAAATAATTGCACAGTCATAATGCCGGC
GAGACCCAAACCGATAAAACACGCGGTGGGAAAGAAAGAGGACACAGGCG
CATTACGCGATCCCTCTCGATCTTTATACACATTGTCCCCTAGGCTGCGA
GCATGCTTACTGGCTTTAATTTTAGTCGTCGCGCGGGCAGAGCCAGACTT
TTTTCTCCCTTGCCATGTCCTTCCTTTGGTGCTGCGACACCACCTTCTTT
AATCGCGCAACGGCCAGCCCTTCAATGCATCACCACGATCGCAACCAAGC
ATTCTCGTCCATTTGTCAACCAAGTGCCTCGTCGCCGCTTCTCCTCGGAA
CCTGTTCCGTCTCCACCCGTGCAAATCGACCCTTTCAATCCGACCGAAGA
ACACACCCACCTCCGTACAACCGTGCGAGCTTTTGTGGAGAAGGAGGTTG
ATCCCCAGGCATTGGTCTTTAACCGCCGCGAAGAGTTCAACTTGCCCCTC
TTTCGAAAGCTTGGAGAGCTAGGCCTGTTGGGTTTGAGCGTCCCGGCGGA
ATACGGTGGGTCTGGTATGGATGCTACCGCGGTGGCCATAGCGCACGAGG
AACTCTCTGCCGCCGATCCTGCCTTTTGCTTGGCCTACCTGGCGCATTCG
TTGCTTTTTGTAAATAACCTGGCTCAGAACGGCTCGCACGCGCAAAAATC
CAAATATTTGCCCGCTGCGTGCGCCGGTACTGCCGTGGGGGGTATGTGTA
TGAGTGAGCCGGGGGCAGGCACAGACGTATTGGGAATGGGCACCGCCGCC
ACAAAAGCAAGCGATGGATCGCACTACATATTGAACGGGGCTAAGATGTG
GATCACAAACGGAACCGTGGACGGGAAGAGCACCGGGGATGTATATTTAG
TGTACGCCAAGACGGGCCAGGCGGCCAAGGACGTGAGCATGTTTCTGGTG
GAGAAGGGATCCCCGGGCTTTCGTTTGGGCCAAAAATTGGAGGACAAGCT
GGGAATGCGGGCGTCCATGACCGCCGAGCTGGTGTTCGACGACTGTCGGG
TTCCGTTGGAGAATCTGGTGGGGAAGGAAGACGGGGCGGCGGCCTGCATG
ATGCGGAACTTGGAAATTGAACGGGTGGGCCTGGCTGCCATGTCCGTAGG
GCTGGCGCGTCGTTGCGTCGAGGTCATGAACGCCTATGCTCAGGAGCGAA
AAGCCTTTGGGCAACCTTTGAATGCTTTTGGTCAGGTGCAACGGCATGTG
GCAGAGTCCTACGCCGAGTATATGGCCGGGCGCGCTTATTTATACTACGT
CGCAAATCAACTGGACTTGTCTTCGTCGGGGAACGGTCTGGACGCAGACG
GGGTTAAATTGTACTGCGCGAAAATGGGCAAGGAGGTGGCGGACAGGGCG
ATTCAGGTTCTGGGCGGGTACGGTTACGTGGGAGAGTATCAGGTGGAGAG
GTTGTGGCGAGATGCCAAGCTCTTGGAGATAGGGGGAGGAACGAACGAGG
CGCACCATAAAAACATGGTCAGGGATTTGAAAAAGCATCATGAGAGGCTG
TTGTAGATTCCAAGGCAGAGAAAGTTGCGGGAAGGAAGGATGGATGTGCA
ATGGGTGGGGCAATGTACTTGTGTAAAGCGCTACGGATGCCAAGGGTCAG
CAAGAGATAATTGTAGCAGAGATGTGGTATATGATGATCATAGCTTGCTT
TGTACAGAATAACGTCAAAAAACAAAGAAAGAGATGTAAAAAGTCGCCCT
GTAAGAAATTTGGATGAAGCACTTCATGGTGTAATTGTTTTTTAGACCGA
AGCACGCGAACACGCCAATGTCTTCCAACTCGTACAGCAAAAATGCCCTT
CAATGC

protein sequence of rna1250

>rna1250-protein ID=rna1250-protein|Name=rna1250|organism=Nannochloropsis gaditana|type=polypeptide|length=802bp
MRRLHCPHNLRPKQCRVSPRDPPRWRPLPLPEGVRQNRSREKKQPCLPAQ
ARRPHPALPWPPPCPEVGIRVLSRRDQSTPCARERHQSRGQQMPPPPPRT
LPLTGDSHTIAMQEVGVGDDSHTGHSDGSNAVPAGPNAHPSLGGNGRGAG
KALGGDQSGPRPPVPGPGHNGQCGVVERGEGGDGRPSRRPRHVYGRLPKF
SPFVGVFQHAPGAGNRARATFFDNLLLTEEEHERRKRIKTNPFTGTFHFL
PGRYSSLHGLQRFRERHRQQAHAGLMTASFDELNRLAALSARAVSQSIES
ADKKSMSDKFLKGALALSAEQYQQSRRRSLYPHKTKSGQAWYAELTMTNG
LPRQRYGGAVDISRKFGTSLDDCCVTGLRTTWRGPSLYRDILYRWNGFRV
YYVHKMRRQGPGMWRRRGSMGSMLLGSNGEDEQLATHRRASKNWRRASSV
ALTGLWWGRGGGNGGGGQRQGTVGLSRSTTLPSNRALSSGHMAVPTASVD
EGGGRKGRSPPRLQHLIPEGLGRAGGGEDYAMGHDYHHSRSPCAREGMSA
PGFSGTQEHHGGTRGDRPEYRRSQTATLISAHLLHGTAGEEEGGGKQGRA
GKTGHERERPRKVGDDYDVDQNQVLGEGSYAAVYGGVHRASQDQVAVKAI
KRRYLFTEEEKASVRNEIENMRRIPPHRNVIRLRECFETVEHVYLVMDRS
THGNLEQMLQIRRKLTELETMWVVKQMLDAVDLLHRSGVLHCDLKPQNLL
FSDFDDGIALAALSKGNQQASQLRRTWMYTSPLGMILRVRVQSLSAGLGF
LD

mRNA from alignment at CM002457.1:143836..147054+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1250 ID=rna1250|Name=rna1250|organism=Nannochloropsis gaditana|type=mRNA|length=3219bp|location=Sequence derived from alignment at CM002457.1:143836..147054+ (Nannochloropsis gaditana)
aaaaagaaaaatccTGAGCCTCAAAGCACGTGGCACCCATCGCCTTAACC
CATACACCGCCTGTGGACATGCTCCCAAACGTGCACATGACCACGGAGGG
CGCATCGTGCGGTGTTTGCTGACTTGTTCCACTTGTAGGACGGACCTCAA
GGAGAGGGGTTGCCACGCCATTGCAGCAGTCGAAAAATTCCCATCCCATC
AGAACTCCTGTGAAGAGCTAACTCCCCACCACATGGCTTGGAAATTGCTC
ATTCACTGGACGTCTTTTGAAGGAGAACATCCAGGATGCTTGTGCTGCGT
GGTGTGTCCCCGTCCTACAGGCATGTCGGTGTGTTTGCATGTCTGATAGA
TGCTATAGTGCTCTGCTTGAAGAGATGGTTGAGGCAACGCGCAGAGGTGT
CTTCTGCTCCCAAGAAAATGGATTTGTCTAAacccccgcccggcccccgc
aATGCCGTTTTCCTTTTACTTCTTGTCAAACAAGGATACAGATACGCTAG
TTGCCACGAGAACTTCGCAAAAGCCGGAGCTGAGCGGCCTTACTCTCTGT
CGCTACGCTGGTCTGCCGTCCAAGCACGTTGATCTTTCCCAGCACTGCGT
CGCACACGGGGTATGTCCAACGTCCCACCTGCCGCTAGCCTTCTTTGACG
CGCACAGCACAAGCCACATTGTTTAAGAGGGCGGcgagagcaggagcaaa
AGCAATCAGGACAAGAAGCATCGCAGATCGGGAGACTATCACTAGACCTC
TCCCCTCCGGTTCAGCATGCCCTTCTCCGAAAAGTCCTATTCTGCAAGCA
GCTCCAATGCGGAGGCTGCATTGCCCACACAACTTGCGACCCAAGCAATG
CAGGGTAAGCCCACGCGATCCGCCCCGGTggcgcccccttcctctcccgg
aGGGTGTACGGCAGAATCGATCtcgggagaagaagcaacCCTGTCTACCA
GCCCAGGCTCGTCGACCACATCCTGCGCTtccttggccccctccatgtcc
ggAAGTGGGGATTCGTGTTCTCTCACGGAGGGATCAGAGCACTCCGTgcg
cgagggaaaggcatcAAAGCCGGGGGCAAcaaatgcccccccccccgccc
cgcacGCTCCCGTTGACAGGCGATAGCCACACCATTGCCATGCAAGAGGT
CGGCGTCGGCGACGACAGCCACACGGGGCACTCAGACGGCTCGAACGCGG
TTCCTGCTGGTCCAAACGCTCACCCATCCCTGGGCGGGAATGGGCGTGGT
GCGGGCAAGGCCCTCGGAGGCGACCAAAGTGGCCCCAGGCCCCCTGTCCC
GGGGCCGGGCCACAACGGACAGTGTGGGGTCGTggaacggggggaaggcg
gggatggcCGACCCTCGCGTCGTCCGCGGCATGTCTACGGGCGCTTACCT
AAATTCAGTCCCTTTGTGGGCGTCTTCCAGCATGCCCCGGGGGCGGGAAA
CCGGGCCCGGGCGACGTTTTTTGACAACCTGCTGTTGACCGAGGAAGAAC
ACGAACGCCGGAAGCGGATCAAGACCAATCCCTTCACTGGCACTTTCCAC
TTCTTGCCCGGGCGCTACTCGAGTTTGCATGGCTTGCAGCGCTTTCGTGA
GCGGCACCGTCAGCAGGCCCACGCGGGTTTGATGACGGCGTCCTTTGATG
AATTGAACCGCCTGGCCGCTTTGTCCGCCCGCGCCGTGTCGCAGTCCATC
GAATCCGCGGACAAGAAGAGTATGTCGGACAAGTTCCTCAAAGGGGCCCT
GGCCCTCTCAGCGGAGCAATACCAACAGTCCCGGCGCCGGTCGTTGTACC
CCCACAAAACCAAGAGCGGCCAAGCCTGGTACGCGGAGTTGACCATGACG
AATGGATTGCCCCGACAACGCTACGGCGGGGCCGTGGACATCTCCCGGAA
GTTTGGCACTTCCCTGGACGACTGTTGCGTGACGGGCCTGAGGACCACCT
GgcgtggcccctccctctaccgGGACATATTATACCGGTGGAACGGCTTC
CGCGTGTACTACGTGCACAAAATGCGACGGCAGGGCCCGGGCATGTGGAG
ACGTCGCGGGAGCATGGGCTCGATGCTGCTGGGCAGCAatggagaggatg
agcaGCTAGCAACGCACCGGCGGGCCTCAAAAAActggaggcgggcgagc
tcAGTGGCTCTCACGGGGCTGTGGtggggccgtggaggggggaatggggg
gggagggcaacgACAGGGGACCGTTGGCCTGTCGCGGTCCACAACCTTGC
CGTCGAACCGTGCGCTTTCCTCCGGGCACATGGCGGTGCCCACCGCaagc
gtggacgagggcgggggaaggaaaggccgTTCCCCTCCGCGGTTGCAGCA
TCTGATCCCAGAGGGCctgggccgggcggggggaggggaggactaCGCGA
TGGGGCACGACTACCACCACTCCCGCTCCCCATGTgccagggagggcatg
tCGGCCCCTGGTTTCTCTGGGACGCAGGAGCATCATGGCGGGACGCGAGG
GGATCGTCCGGAGTACCGGCGCAGTCAAACGGCGACCCTCATTTCGGCCC
ATTTGTTGCACGGCacggcaggggaagaagagggaggaggcaagcaaggg
agggcaggaaagacGGGCCACGAGCGAGAGCGCCCACGAAAAGTAGGGGA
TGACTACGACGTGGATCAGAACCAGGtcctgggcgaggggagcTATGCGG
CTGTCTATGGAGGCGTCCACCGGGCCAGCCAAGATCAGGTGGCGGTGAAG
GCGATCAAGCGGCGGTACTTGttcacagaggaggagaaggcgagcgtTCG
GAACGAAATTGAAAACATGCGGCGCATCCCGCCCCATCGAAACGTGATTA
GGCTGCGGGAGTGCTTTGAAACCGTAGAGCACGTTTACCTCGTCATGGAC
CGGTCCACCCATGGTAATTTGGAACAAATGCTCCAAATTCGTCGGAAACT
CACGGAGTTGGAGACTATGTGGGTGGTGAAACAGATGCTGGATGCCGTGG
ACCTCTTGCACCGGTCGGGGGTGCTACACTGTGACTTGAAGCCCCAGAAT
CTTCTGTTCTCGGACTTTGACGACGGCATTGCCTTGGCCGCGCTTTCCAA
GGGCAACCAGCAGGCTTCCCAGCTTCGGCGCACCTGGATGTATACCTCTC
CATTGGGAATGATTCTCAGGGTACGGGTACAAAGCTTATCTGCGGGCCTG
GGGTTTCTAGACTGACTGA

Coding sequence (CDS) from alignment at CM002457.1:143836..147054+

>rna1250 ID=rna1250|Name=rna1250|organism=Nannochloropsis gaditana|type=CDS|length=2409bp|location=Sequence derived from alignment at CM002457.1:143836..147054+ (Nannochloropsis gaditana)
ATGCGGAGGCTGCATTGCCCACACAACTTGCGACCCAAGCAATGCAGGGT
AAGCCCACGCGATCCGCCCCGGTggcgcccccttcctctcccggaGGGTG
TACGGCAGAATCGATCtcgggagaagaagcaacCCTGTCTACCAGCCCAG
GCTCGTCGACCACATCCTGCGCTtccttggccccctccatgtccggAAGT
GGGGATTCGTGTTCTCTCACGGAGGGATCAGAGCACTCCGTgcgcgaggg
aaaggcatcAAAGCCGGGGGCAAcaaatgcccccccccccgccccgcacG
CTCCCGTTGACAGGCGATAGCCACACCATTGCCATGCAAGAGGTCGGCGT
CGGCGACGACAGCCACACGGGGCACTCAGACGGCTCGAACGCGGTTCCTG
CTGGTCCAAACGCTCACCCATCCCTGGGCGGGAATGGGCGTGGTGCGGGC
AAGGCCCTCGGAGGCGACCAAAGTGGCCCCAGGCCCCCTGTCCCGGGGCC
GGGCCACAACGGACAGTGTGGGGTCGTggaacggggggaaggcggggatg
gcCGACCCTCGCGTCGTCCGCGGCATGTCTACGGGCGCTTACCTAAATTC
AGTCCCTTTGTGGGCGTCTTCCAGCATGCCCCGGGGGCGGGAAACCGGGC
CCGGGCGACGTTTTTTGACAACCTGCTGTTGACCGAGGAAGAACACGAAC
GCCGGAAGCGGATCAAGACCAATCCCTTCACTGGCACTTTCCACTTCTTG
CCCGGGCGCTACTCGAGTTTGCATGGCTTGCAGCGCTTTCGTGAGCGGCA
CCGTCAGCAGGCCCACGCGGGTTTGATGACGGCGTCCTTTGATGAATTGA
ACCGCCTGGCCGCTTTGTCCGCCCGCGCCGTGTCGCAGTCCATCGAATCC
GCGGACAAGAAGAGTATGTCGGACAAGTTCCTCAAAGGGGCCCTGGCCCT
CTCAGCGGAGCAATACCAACAGTCCCGGCGCCGGTCGTTGTACCCCCACA
AAACCAAGAGCGGCCAAGCCTGGTACGCGGAGTTGACCATGACGAATGGA
TTGCCCCGACAACGCTACGGCGGGGCCGTGGACATCTCCCGGAAGTTTGG
CACTTCCCTGGACGACTGTTGCGTGACGGGCCTGAGGACCACCTGgcgtg
gcccctccctctaccgGGACATATTATACCGGTGGAACGGCTTCCGCGTG
TACTACGTGCACAAAATGCGACGGCAGGGCCCGGGCATGTGGAGACGTCG
CGGGAGCATGGGCTCGATGCTGCTGGGCAGCAatggagaggatgagcaGC
TAGCAACGCACCGGCGGGCCTCAAAAAActggaggcgggcgagctcAGTG
GCTCTCACGGGGCTGTGGtggggccgtggaggggggaatggggggggagg
gcaacgACAGGGGACCGTTGGCCTGTCGCGGTCCACAACCTTGCCGTCGA
ACCGTGCGCTTTCCTCCGGGCACATGGCGGTGCCCACCGCaagcgtggac
gagggcgggggaaggaaaggccgTTCCCCTCCGCGGTTGCAGCATCTGAT
CCCAGAGGGCctgggccgggcggggggaggggaggactaCGCGATGGGGC
ACGACTACCACCACTCCCGCTCCCCATGTgccagggagggcatgtCGGCC
CCTGGTTTCTCTGGGACGCAGGAGCATCATGGCGGGACGCGAGGGGATCG
TCCGGAGTACCGGCGCAGTCAAACGGCGACCCTCATTTCGGCCCATTTGT
TGCACGGCacggcaggggaagaagagggaggaggcaagcaagggagggca
ggaaagacGGGCCACGAGCGAGAGCGCCCACGAAAAGTAGGGGATGACTA
CGACGTGGATCAGAACCAGGtcctgggcgaggggagcTATGCGGCTGTCT
ATGGAGGCGTCCACCGGGCCAGCCAAGATCAGGTGGCGGTGAAGGCGATC
AAGCGGCGGTACTTGttcacagaggaggagaaggcgagcgtTCGGAACGA
AATTGAAAACATGCGGCGCATCCCGCCCCATCGAAACGTGATTAGGCTGC
GGGAGTGCTTTGAAACCGTAGAGCACGTTTACCTCGTCATGGACCGGTCC
ACCCATGGTAATTTGGAACAAATGCTCCAAATTCGTCGGAAACTCACGGA
GTTGGAGACTATGTGGGTGGTGAAACAGATGCTGGATGCCGTGGACCTCT
TGCACCGGTCGGGGGTGCTACACTGTGACTTGAAGCCCCAGAATCTTCTG
TTCTCGGACTTTGACGACGGCATTGCCTTGGCCGCGCTTTCCAAGGGCAA
CCAGCAGGCTTCCCAGCTTCGGCGCACCTGGATGTATACCTCTCCATTGG
GAATGATTCTCAGGGTACGGGTACAAAGCTTATCTGCGGGCCTGGGGTTT
CTAGACTGA

Synonyms

Publications