rna1243, rna1243 (mRNA) Nannochloropsis gaditana

Overview
Namerna1243
Unique Namerna1243
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length849
Alignment locationCM002457.1:128819..129043 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100305g4.5920.mrna
Orig protein idgnl|cribi|Naga_100305g4.5920
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:128819..129043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100305g4gene1197Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1243rna1243-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29434.1cds1242Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1243 ID=rna1243|Name=rna1243|organism=Nannochloropsis gaditana|type=mRNA|length=849bp
ATGCTACGGCTACAGCAACATGCCGGGCGCCGGATTGCGGCGGCGGTCGT
GGGAAGTCCAGCATTTCGTGCGGTGTCGTCCTCGGCGACTACCCCGGCCC
CTCAGCAGGACTTGAAGCTCAAGAGTAGCGCTAAAGGGAACATCAAATTC
TTCAAGGTGTACCGGTGGGATCCCGAGCAGAACCAGAAACCTTACCTCTC
TACCTACCCGGTGGACCTTGATGACTGCGGCCCCATGGTCCTGGACGCGC
TTTTCAAGATCAAGAACGAACAGGACCCGACATTGACCTTCCGACGGTCC
TGTAGGGAGGGGATTTGCGGGTCGTGTGCGATGAACATCGACGGCACCAA
CACCTTGGCCTGCTTGTCTTACATCAACAAGGGCCCAGAGCCCACGAAAA
TCTACCCGCTGCCCCATATGTATGTGTTGAAAGATTTGGTTCCCGACATG
ACGAATTTTTATGACCAGTACAAGAGCATCGAACCGTGGCTGCAGACCAA
GGCAGTGGAGGCGAAGGACCCAAACAAGGAGCACTTGCAATCCAAGGAGG
ACCGCAAGAAGTTGGATGGGATGTACGAGTGCATCCTCTGCGCCTGCTGC
TCGACCGCCTGTCCCTCTTATTGGTGGGCCGCAGACAAGTATTTGGGGCC
CGCTGTCCTGATGCAGGCGTACCGGTGGATTGAGGATTCGCGGGATGAGT
ATACCAAGGAGAGGCTGGAGGCCCTGGACGATTCTTTCAAGCTCTACCGT
TGCCACACTATCATGAACTGCACCAAAGTATGCCCGAAGCACTTGAATCC
AGGCCGTGCCATCGCCCACATCAAGAAACGCCTGGCGGCCACGCACTAG
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protein sequence of rna1243

>rna1243-protein ID=rna1243-protein|Name=rna1243|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MVARNLQSSLQATMGGNVGNIRRDLVCVTVTTSPTIAASSFSPSRKPTPP
LPASLPKHTSRSNMAQAARIFLQA
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mRNA from alignment at CM002457.1:128819..129043+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1243 ID=rna1243|Name=rna1243|organism=Nannochloropsis gaditana|type=mRNA|length=225bp|location=Sequence derived from alignment at CM002457.1:128819..129043+ (Nannochloropsis gaditana)
ATGGTGGCAAGAAACCTCCAAAGTAGCCTTCAGGCGACTATGGGCGGTAA
CGTCGGAAATATTCGTCGGGATTTGGTTTGCGTTACCGTTACAACGTCAC
CGACAATCGCCGCAAGCAGTTTCTCTCCATCTAGAAAACCaaccccccct
ctccctgcctccctcccgaagcATACATCACGGTCAAATATGGCACAGGC
TGCACGCATTTTTCTTCAGGCATGA
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Coding sequence (CDS) from alignment at CM002457.1:128819..129043+

>rna1243 ID=rna1243|Name=rna1243|organism=Nannochloropsis gaditana|type=CDS|length=225bp|location=Sequence derived from alignment at CM002457.1:128819..129043+ (Nannochloropsis gaditana)
ATGGTGGCAAGAAACCTCCAAAGTAGCCTTCAGGCGACTATGGGCGGTAA
CGTCGGAAATATTCGTCGGGATTTGGTTTGCGTTACCGTTACAACGTCAC
CGACAATCGCCGCAAGCAGTTTCTCTCCATCTAGAAAACCaaccccccct
ctccctgcctccctcccgaagcATACATCACGGTCAAATATGGCACAGGC
TGCACGCATTTTTCTTCAGGCATGA
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Synonyms
Publications