rna1242, rna1242 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1242
Unique Name	rna1242
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	468
Alignment location	CM002457.1:126559..128441 +

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Properties


Property Name	Value
Product	succinate dehydrogenase iron sulfur protein
Orig transcript id	gnl\|cribi\|Naga_100305g3.5914.mrna
Orig protein id	gnl\|cribi\|Naga_100305g3.5914
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:126559..128441 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100305g3	gene1196	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1242	rna1242-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29428.1	cds1241	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:126559..128441+
coding sequence from alignment at CM002457.1:126559..128441+

mRNA sequence

>rna1242 ID=rna1242|Name=rna1242|organism=Nannochloropsis gaditana|type=mRNA|length=468bp
ATGCACGCTGCCCCACGGAACTCAAAGGAGCAAATTGAAGCGATGAGAGA
TCTAGCGCTGCGTTTTGCGCGGGCATTCGAAGGTTTTGGACTTAGCACGA
GTCTCCAATCGCCTCGCAATGTGGCGAAGGAGAGGTTGTCCATAATTCTT
GCCCATCAACGCCTCTCTGACGTGAACATTCAGCAGCTTCAGGCGGATGT
CCTTGCTTGTGTGCAAAAATATGTCAAAGTGAGACCTGAAGAAGCTGTCT
CCATAAAAGTAAAACAAGACGGGGGAATCGACGTGTTCGAAATGCAAATT
GCCTTGGCCGGGGCTGCTGCTAATTTATCGGCGGGAAAGCAGTTGGATGA
GAAAAGGACGGATCGATTCTTATTTACGGGTCGGAGGAGCCTAGCTTCTT
GCTCTCTCAGTTCCATGTTGTCACGTACTGAGCCCGGGCTTTCGAGGTCG
CCGGGACTGACTCTGTGA

protein sequence of rna1242

>rna1242-protein ID=rna1242-protein|Name=rna1242|organism=Nannochloropsis gaditana|type=polypeptide|length=282bp
MLRLQQHAGRRIAAAVVGSPAFRAVSSSATTPAPQQDLKLKSSAKGNIKF
FKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPTLTFRRS
CREGICGSCAMNIDGTNTLACLSYINKGPEPTKIYPLPHMYVLKDLVPDM
TNFYDQYKSIEPWLQTKAVEAKDPNKEHLQSKEDRKKLDGMYECILCACC
STACPSYWWAADKYLGPAVLMQAYRWIEDSRDEYTKERLEALDDSFKLYR
CHTIMNCTKVCPKHLNPGRAIAHIKKRLAATH

mRNA from alignment at CM002457.1:126559..128441+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1242 ID=rna1242|Name=rna1242|organism=Nannochloropsis gaditana|type=mRNA|length=1883bp|location=Sequence derived from alignment at CM002457.1:126559..128441+ (Nannochloropsis gaditana)
ATGCTACGGCTACAGCAACATGCCGGGCGCCGGATTGCGGCGGCGGTCGT
GGGAAGTCCAGCATTTCGTGCGGTGTCGTCCTCGGCGACTACCCCGGCCC
CTCAGCAGGACTTGAAGCTCAAGAGTAGCGCTAAAGGGGTGAGtgaagaa
ggacggagggggaagtaCGGCCTCGGGATTGGTGATACAGAGAGAAATGC
GAAGTGAGGTTCGGGTCGGTGGTTGGAATGGATTGGCGTGCTTTATGGTG
ATACCGCAACTCCATTGTTGGCTGCCGGACTGCGGAGAGCACTGAGCATA
GTTGGGTGTCACGTAGGAGAACGCAAGAAATTACGGGACGCAGCTCACGC
CAGTCTCATTTCCCCTTGCCTGATGCGTGCGGACAGAACATCAAATTCTT
CAAGGTGTACCGGTGGGATCCCGAGCAGAACCAGAAACCTTACCTCTCTA
CCTACCCGGTGGACCTTGATGAGTAAGGAAGACCCCCCCTTCgacctttt
ctttttcccttgaATGCGACCTTGCTTgacccttcttttctttggcGAAT
GTGCCACCGTGTAGACTGTCTCCATACACGTCAAGCTCGAGGAGCAccgt
tccctcttccctccgtccctccctccgtgcctccctccctccctcctccc
tcacttctttctctcctgcccccttcccgccccctctcccttccctgccc
gcgCGCGCCACAGCTGCGGCCCCATGGTCCTGGACGCGCTTTTCAAGATC
AAGAACGAACAGGACCCGACATTGACCTTCCGACGGTCCTGTAGGGAGGG
GATTTGCGGGTCGTGTGCGATGAACATCGACGGCACCAACACCTTGGCCT
GCTTGTCTTACATCAACAAGGGCCCAGAGCCCACGAAAATCTACCCGCTG
CCCCATATGTATGTGTTGAAAGATTTGGTTCCCGACATGACGAATTTTTA
TGACCAGTACaaggtaagggagggaaggagggaaggaaggaaagagggaa
ggaaagaaggagggaaggttgGCGTGGCGCGCATGTCGTCAAAAGACATG
CCTGGAGCCGGTGACTCACCTGGGCAAttcgcctcctttcccactcGGGC
TTTCCAGAGCATCGAACCGTGGCTGCAGAccaaggcagtggaggcgaagg
accCAAACAAGGAGCACTTGCAATCCAAGGAGGACCGCAAGAAGTTGGAT
GGGATGTACGAGTGCATCCTCTGCGCCTGCTGCTCGACCGCCTGTCCCTC
TTATTGGTGGGCCGCAGACAAGTATTTGGGGCCCGCTGTCCTGATGCAGG
CGTACCGGTGGATTGAGGATTCGCGGGATGAGTATACCAAGGAGAggctg
gaggccctggacgaTTCTTTCaaggtaaggaggaggattgcccgccctcc
ttcccgccttccttcccgccttcccttgTGTCCAAgccctgtcttccctc
ccatcttctCGAGCGACGTGGCCCCGTGTGTCGTTTCTCctgtggaggca
ggggccgtggagggtTTCCCGTCCCCGCTCGCCGCTATTCACGGAcccgc
cctcgctttcctcgttCCACTCGTCcggctctttctctctctcctctgcc
ccatTGAGCCTCAGTGCCTGCCCTTCAGTCACTACACCAGCCTGGCATAC
CTAGCACGTCGTGCCCGCATCCTGTGccccttgcctctctctctccctcc
ctccctccccaccttgcACCTGTTTCTaacccttttcttccccggcttcc
tccctcccttcctcccccccctaaGCTCTACCGTTGCCACACTATCATGA
ACTGCACCAAAGTATGCCCGAAGCACTTGAATCCAGGCCGTGCCATCGCC
CACATCAAGAAACGCCTGGCGGCCACGCACTAG

Coding sequence (CDS) from alignment at CM002457.1:126559..128441+

>rna1242 ID=rna1242|Name=rna1242|organism=Nannochloropsis gaditana|type=CDS|length=4245bp|location=Sequence derived from alignment at CM002457.1:126559..128441+ (Nannochloropsis gaditana)
ATGCTACGGCTACAGCAACATGCCGGGCGCCGGATTGCGGCGGCGGTCGT
GGGAAGTCCAGCATTTCGTGCGGTGTCGTCCTCGGCGACTACCCCGGCCC
CTCAGCAGGACTTGAAGCTCAAGAGTAGCGCTAAAGGGAACATCAAATTC
TTCAAGGTGTACCGGTGGGATCCCGAGCAGAACCAGAAACCTTACCTCTC
TACCTACCCGGTGGACCTTGATGACTGCGGCCCCATGGTCCTGGACGCGC
TTTTCAAGATCAAGAACGAACAGGACCCGACATTGACCTTCCGACGGTCC
TGTAGGGAGGGGATTTGCGGGTCGTGTGCGATGAACATCGACGGCACCAA
CACCTTGGCCTGCTTGTCTTACATCAACAAGGGCCCAGAGCCCACGAAAA
TCTACCCGCTGCCCCATATGTATGTGTTGAAAGATTTGGTTCCCGACATG
ACGAATTTTTATGACCAGTACaagAGCATCGAACCGTGGCTGCAGAccaa
ggcagtggaggcgaaggaccCAAACAAGGAGCACTTGCAATCCAAGGAGG
ACCGCAAGAAGTTGGATGGGATGTACGAGTGCATCCTCTGCGCCTGCTGC
TCGACCGCCTGTCCCTCTTATTGGTGGGCCGCAGACAAGTATTTGGGGCC
CGCTGTCCTGATGCAGGCGTACCGGTGGATTGAGGATTCGCGGGATGAGT
ATACCAAGGAGAggctggaggccctggacgaTTCTTTCaagCTCTACCGT
TGCCACACTATCATGAACTGCACCAAAGTATGCCCGAAGCACTTGAATCC
AGGCCGTGCCATCGCCCACATCAAGAAACGCCTGGCGGCCACGCACTAGA
TGCTACGGCTACAGCAACATGCCGGGCGCCGGATTGCGGCGGCGGTCGTG
GGAAGTCCAGCATTTCGTGCGGTGTCGTCCTCGGCGACTACCCCGGCCCC
TCAGCAGGACTTGAAGCTCAAGAGTAGCGCTAAAGGGAACATCAAATTCT
TCAAGGTGTACCGGTGGGATCCCGAGCAGAACCAGAAACCTTACCTCTCT
ACCTACCCGGTGGACCTTGATGACTGCGGCCCCATGGTCCTGGACGCGCT
TTTCAAGATCAAGAACGAACAGGACCCGACATTGACCTTCCGACGGTCCT
GTAGGGAGGGGATTTGCGGGTCGTGTGCGATGAACATCGACGGCACCAAC
ACCTTGGCCTGCTTGTCTTACATCAACAAGGGCCCAGAGCCCACGAAAAT
CTACCCGCTGCCCCATATGTATGTGTTGAAAGATTTGGTTCCCGACATGA
CGAATTTTTATGACCAGTACaagAGCATCGAACCGTGGCTGCAGAccaag
gcagtggaggcgaaggaccCAAACAAGGAGCACTTGCAATCCAAGGAGGA
CCGCAAGAAGTTGGATGGGATGTACGAGTGCATCCTCTGCGCCTGCTGCT
CGACCGCCTGTCCCTCTTATTGGTGGGCCGCAGACAAGTATTTGGGGCCC
GCTGTCCTGATGCAGGCGTACCGGTGGATTGAGGATTCGCGGGATGAGTA
TACCAAGGAGAggctggaggccctggacgaTTCTTTCaagCTCTACCGTT
GCCACACTATCATGAACTGCACCAAAGTATGCCCGAAGCACTTGAATCCA
GGCCGTGCCATCGCCCACATCAAGAAACGCCTGGCGGCCACGCACTAGAT
GCTACGGCTACAGCAACATGCCGGGCGCCGGATTGCGGCGGCGGTCGTGG
GAAGTCCAGCATTTCGTGCGGTGTCGTCCTCGGCGACTACCCCGGCCCCT
CAGCAGGACTTGAAGCTCAAGAGTAGCGCTAAAGGGAACATCAAATTCTT
CAAGGTGTACCGGTGGGATCCCGAGCAGAACCAGAAACCTTACCTCTCTA
CCTACCCGGTGGACCTTGATGACTGCGGCCCCATGGTCCTGGACGCGCTT
TTCAAGATCAAGAACGAACAGGACCCGACATTGACCTTCCGACGGTCCTG
TAGGGAGGGGATTTGCGGGTCGTGTGCGATGAACATCGACGGCACCAACA
CCTTGGCCTGCTTGTCTTACATCAACAAGGGCCCAGAGCCCACGAAAATC
TACCCGCTGCCCCATATGTATGTGTTGAAAGATTTGGTTCCCGACATGAC
GAATTTTTATGACCAGTACaagAGCATCGAACCGTGGCTGCAGAccaagg
cagtggaggcgaaggaccCAAACAAGGAGCACTTGCAATCCAAGGAGGAC
CGCAAGAAGTTGGATGGGATGTACGAGTGCATCCTCTGCGCCTGCTGCTC
GACCGCCTGTCCCTCTTATTGGTGGGCCGCAGACAAGTATTTGGGGCCCG
CTGTCCTGATGCAGGCGTACCGGTGGATTGAGGATTCGCGGGATGAGTAT
ACCAAGGAGAggctggaggccctggacgaTTCTTTCaagCTCTACCGTTG
CCACACTATCATGAACTGCACCAAAGTATGCCCGAAGCACTTGAATCCAG
GCCGTGCCATCGCCCACATCAAGAAACGCCTGGCGGCCACGCACTAGATG
CTACGGCTACAGCAACATGCCGGGCGCCGGATTGCGGCGGCGGTCGTGGG
AAGTCCAGCATTTCGTGCGGTGTCGTCCTCGGCGACTACCCCGGCCCCTC
AGCAGGACTTGAAGCTCAAGAGTAGCGCTAAAGGGAACATCAAATTCTTC
AAGGTGTACCGGTGGGATCCCGAGCAGAACCAGAAACCTTACCTCTCTAC
CTACCCGGTGGACCTTGATGACTGCGGCCCCATGGTCCTGGACGCGCTTT
TCAAGATCAAGAACGAACAGGACCCGACATTGACCTTCCGACGGTCCTGT
AGGGAGGGGATTTGCGGGTCGTGTGCGATGAACATCGACGGCACCAACAC
CTTGGCCTGCTTGTCTTACATCAACAAGGGCCCAGAGCCCACGAAAATCT
ACCCGCTGCCCCATATGTATGTGTTGAAAGATTTGGTTCCCGACATGACG
AATTTTTATGACCAGTACaagAGCATCGAACCGTGGCTGCAGAccaaggc
agtggaggcgaaggaccCAAACAAGGAGCACTTGCAATCCAAGGAGGACC
GCAAGAAGTTGGATGGGATGTACGAGTGCATCCTCTGCGCCTGCTGCTCG
ACCGCCTGTCCCTCTTATTGGTGGGCCGCAGACAAGTATTTGGGGCCCGC
TGTCCTGATGCAGGCGTACCGGTGGATTGAGGATTCGCGGGATGAGTATA
CCAAGGAGAggctggaggccctggacgaTTCTTTCaagCTCTACCGTTGC
CACACTATCATGAACTGCACCAAAGTATGCCCGAAGCACTTGAATCCAGG
CCGTGCCATCGCCCACATCAAGAAACGCCTGGCGGCCACGCACTAGATGC
TACGGCTACAGCAACATGCCGGGCGCCGGATTGCGGCGGCGGTCGTGGGA
AGTCCAGCATTTCGTGCGGTGTCGTCCTCGGCGACTACCCCGGCCCCTCA
GCAGGACTTGAAGCTCAAGAGTAGCGCTAAAGGGAACATCAAATTCTTCA
AGGTGTACCGGTGGGATCCCGAGCAGAACCAGAAACCTTACCTCTCTACC
TACCCGGTGGACCTTGATGACTGCGGCCCCATGGTCCTGGACGCGCTTTT
CAAGATCAAGAACGAACAGGACCCGACATTGACCTTCCGACGGTCCTGTA
GGGAGGGGATTTGCGGGTCGTGTGCGATGAACATCGACGGCACCAACACC
TTGGCCTGCTTGTCTTACATCAACAAGGGCCCAGAGCCCACGAAAATCTA
CCCGCTGCCCCATATGTATGTGTTGAAAGATTTGGTTCCCGACATGACGA
ATTTTTATGACCAGTACaagAGCATCGAACCGTGGCTGCAGAccaaggca
gtggaggcgaaggaccCAAACAAGGAGCACTTGCAATCCAAGGAGGACCG
CAAGAAGTTGGATGGGATGTACGAGTGCATCCTCTGCGCCTGCTGCTCGA
CCGCCTGTCCCTCTTATTGGTGGGCCGCAGACAAGTATTTGGGGCCCGCT
GTCCTGATGCAGGCGTACCGGTGGATTGAGGATTCGCGGGATGAGTATAC
CAAGGAGAggctggaggccctggacgaTTCTTTCaagCTCTACCGTTGCC
ACACTATCATGAACTGCACCAAAGTATGCCCGAAGCACTTGAATCCAGGC
CGTGCCATCGCCCACATCAAGAAACGCCTGGCGGCCACGCACTAG

Synonyms

Publications