rna1237, rna1237 (mRNA) Nannochloropsis gaditana

Overview
Namerna1237
Unique Namerna1237
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length955
Alignment locationCM002457.1:120096..120573 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103395g1.5788.mrna
Orig protein idgnl|cribi|Naga_103395g1.5788
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:120096..120573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103395g1gene1191Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1237rna1237-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29437.1cds1236Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1237 ID=rna1237|Name=rna1237|organism=Nannochloropsis gaditana|type=mRNA|length=955bp
AAGCACCTTACCAACCTGTTGTGCCAGACAGACTAGCGACTGTAATACAT
GGCTCGTTATGCGAAGTTGAATTTTCTAAACGCCATTTTCTCAGTCGAAG
AGCGTTGGGCCGTTGGGGGCTGCTTTCTACACGGTCTATGAGCGAGAGCA
CGTCCAATCCCAGTAAGCTTCAATTTGCATGGATTTGACACCCTCTCACC
CCCCCCAAATGGTCACACAGGCATTCAGGGACATATTTGTGCGTTTGAGA
CCCTGCGGCAGGTCTTGTGGTAGGTGATAGTCGCCCATTTCCATGCTCAA
GCGTCTTGGTCGCCACTTCCCCATCGTTTGCACTCTGCAGCCACCGCGTA
ACACATTACTGCTGTTCATGATCTTGTTGACACTGGGCCGTACAAACACA
TTTGTCGAAGCCTTAGTGTCTCGTGTGCACTCGTCCTCTGCTTTCTCACT
CAGCCAACGTATTCAGCCGCCGCGTCACTTGCTGAGGATGGCATCAACCT
CCTCTGTCGACTCGGTTAGCAATAAGGACGGATTTCCCTACAGGCTCATC
GACTCGCACCATCACGTCTGGACAGCGGGTTTGCTTCCATATGCATACGC
TGAGGGGCAAAGCGCACCGCCGGGTCTGCAAGAGAAAGGGAGTGTGGAGG
AGTTTCTGGGTCTGGCAGCAAACGCTGGTGTTCAGCGCTCCTTGATTGTA
CAGCCTATTCTGTACATGTTTGATCACTCTTACGTCCGTGCCGCCTTGGA
ACGATACCCGGAGAAATTCCATGGCATGCTGGTCGCCAACCCAACCCTGT
CTCCTCAGGAGGCGACCGCCGAGCTCGGGCGTTTACAGTCCCAAGGGTTC
AACTCCGTCCGGTTCAATCCTTACATTTGGCCGGCCGGGGAGAAGATGGA
CAACCCCACCGGGCGAGCCCTGTACGCGGAGGCCGGGCGTCGGACCATGC
CCGTC
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protein sequence of rna1237

>rna1237-protein ID=rna1237-protein|Name=rna1237|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
REGGRDKSVLLLPMHAPLALVPSLLEEPLLPLLPSLPSHWLPGSKHRTHV
AFEPSQSARTPCLSRVLSYSHSPSRPSTSHIHVCICSNIYTLTFDLFPLS
SDFPYVCTLGGGYKEAPRAILAWKAAGLLPSLTETDYENLFSGTYCRVFG
VTGREG
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mRNA from alignment at CM002457.1:120096..120573+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1237 ID=rna1237|Name=rna1237|organism=Nannochloropsis gaditana|type=mRNA|length=478bp|location=Sequence derived from alignment at CM002457.1:120096..120573+ (Nannochloropsis gaditana)
agggagggagggagggacaagagcGTCTTGCTGCTACCCATGCACGCGCC
TCTTGCATTGGTCCCGTCCCTTCTCGAGgagcccctgctccctctccttc
cttccctcccctcgcatTGGCTTCCGGGATCCAAGCACAGGACGCACGTG
GCATTTGAGCCTTCCCAATCGGCCCGCACGCCTTGTTTGTCTCGTGTCCT
TTCATACAGCCACTCACCCTCACGCCCGTCAACCTCTCACATACATGTAT
GTATATGTTCAAACATATACACACTGACCTTTGACCTTTTCCCTCTATCC
AGCGATTTCCCTTACGTGTGTACACTAGGAGGTGGCTATAAAGAGGCGCC
CCGAGCCATTCTGGCCTGGAAGGCCGCAGGTCTACTACCCTCACTGACGG
AAACGGATTACGAGAACCTCTTCAGTGGCACGTACTGCCGGGTCTTTGGG
gtgacagggagggagggatagagggagg
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Coding sequence (CDS) from alignment at CM002457.1:120096..120573+

>rna1237 ID=rna1237|Name=rna1237|organism=Nannochloropsis gaditana|type=CDS|length=471bp|location=Sequence derived from alignment at CM002457.1:120096..120573+ (Nannochloropsis gaditana)
agggagggagggagggacaagagcGTCTTGCTGCTACCCATGCACGCGCC
TCTTGCATTGGTCCCGTCCCTTCTCGAGgagcccctgctccctctccttc
cttccctcccctcgcatTGGCTTCCGGGATCCAAGCACAGGACGCACGTG
GCATTTGAGCCTTCCCAATCGGCCCGCACGCCTTGTTTGTCTCGTGTCCT
TTCATACAGCCACTCACCCTCACGCCCGTCAACCTCTCACATACATGTAT
GTATATGTTCAAACATATACACACTGACCTTTGACCTTTTCCCTCTATCC
AGCGATTTCCCTTACGTGTGTACACTAGGAGGTGGCTATAAAGAGGCGCC
CCGAGCCATTCTGGCCTGGAAGGCCGCAGGTCTACTACCCTCACTGACGG
AAACGGATTACGAGAACCTCTTCAGTGGCACGTACTGCCGGGTCTTTGGG
gtgacagggagggagggatag
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Synonyms
Publications