rna1232, rna1232 (mRNA) Nannochloropsis gaditana

Overview
Namerna1232
Unique Namerna1232
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1062
Alignment locationCM002457.1:110750..111335 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100083g4.6770.mrna
Orig protein idgnl|cribi|Naga_100083g4.6770
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:110750..111335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100083g4gene1187Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1232rna1232-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29443.1cds1231Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1232 ID=rna1232|Name=rna1232|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp
ATGCCTAGAGTAGTGTTGAGTACCAGCAGCAAAAAATCCTGTATCCTTCT
ACTTCTACTGCCGTCCTTGGTATCTGCATTCTTCGTCAGAACCCCCCTAC
CCATGAGCACAGTCTTGTCTCACTCACGTCGTACTGTGTCCTGTATGGCG
GCGAGCACCTCTCCTGCGACTAAACTCCGCAATCTCCTGCAGCAGAACGA
CATTTTGATCATGCCATGCTGCTATGACGGTCTCACGGCACGACTGGTGG
AGCAACATGGCTTTCCACTCACGTTCATGACCGGTTTTGGAGTGTCGGCC
GCCCGCGGTCACCCGGATACACAACTTCTAAGCTACGCCGAGATGGTCGA
CAATGCCCGCCAGATCTCCGAAGCTTTGCACACGATCCCTTGCATCGGTG
ATGGAGACACCGGGTACGGAAACGCCGTGAACGTGAAGCGGACCGTCGGG
GGATACGCCCAAGCAGGGCTGGCGGGGATCATGATCGAAGATCAGGTGGC
GCCCAAGAAATGTGGACACACGAAAGGCAAAAGCTGCGTGTCGCGGGAAG
AAGCTTTTGCCAGGGTCCAGGCGGCCGTGGACGCTCGCAACGAAGGGGCG
GACATACTGATTATGGCGCGCACGGATGCCCGGGCCGGATTGGGTATGGA
TGAAGCTATTTATCGCTGTCAGAAATTCCGCGAAATCGGTGCCGATATCA
CCTTCTTGGAAGCTCCACATTCCGAGGAAGAAATGCGCCGGTACTGCCAG
GAAGTAGAGGGACCCAAGCTCGCGAACATGCTGCAAAACGGGAGGACACC
TGTCTTGCCACCGGCCAAATTGCAGGAGATGGGGTACACGATAGTCGCCT
ACCCCTTGGCCCTGCTAAGTGCAGGCATCAAAGCCATGCGGACGGTGCTG
ACGCTGGCGAAGGATGGAAAAGAATTCGAGCACCTGCTGGCCGATTTTGA
GGAGACCAAGGCGGTGGTGGGTTTTCCAGCCTACTACGCAGCGGAAGAGA
AAGCAGCCGCCGACATCGAGGCATTCGGGCGCGTGGAAGAGGCAAGACGG
GACGGGAAATAG
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protein sequence of rna1232

>rna1232-protein ID=rna1232-protein|Name=rna1232|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MVPDKCVFEEGVLNKLCAVSERAGNIVWNMPAGRSEHSTFTGNEMAEREK
ERKGFQYGEGEKNILGGIKAATSGLELINRKSKTHGGSLGTPVVALHLAK
GGSERGGGRDKGNVKEKRDGDGKKEMMSMQSLVVVRNQQVDGQSSARGRQ
ALCIETSKWTKGGKETTIQ
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mRNA from alignment at CM002457.1:110750..111335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1232 ID=rna1232|Name=rna1232|organism=Nannochloropsis gaditana|type=mRNA|length=586bp|location=Sequence derived from alignment at CM002457.1:110750..111335- (Nannochloropsis gaditana)
ATGGTGCCAGACAAGTGTGTATTTGAGGAGGGGGTATTAAATAAGCTTTG
TGCGGTCTCGGAGAGAGCTGGAAACATCGTGTGGAACATGCCCGCGGGAA
GAAGCGAGCATTCCACCTTTACTGGTAATGAGATGGCTGTGTGACAAGGA
GGGGGAGAACCACGGTATTGGGTAGAAGCCCGCCTCTGTGTGCATTGAAC
GGCACACTGGAAAGGAGAGGGAAAAGGAAAGAAAGGGATTCCAATATGGA
GAAGGGGAAAAGAATATTTTGGGGGGGATAAAGGCTGCTACTTCCGGGTT
GGAGTTGATAAACAGAAAGTCCAAGACACACGGCGGCTCTCTCGGGACCC
CTGTGGTCGCTTTACATCTTGCGAAAGGAGGAAGTGAAAGAGGAGGGGGG
AGGGATAAAGGGAATGTAAAGGAGAAGAGAGATGGGGATGGAAAGAAGGA
GATGATGAGCATGCAAAGCCTCGTGGTGGTTCGAAACCAGCAAGTCGATG
GGCAGTCATCAGCGCGGGGACGGCAGGCGTTATGCATTGAAACCAGCAAG
TGGACCAAGGGGGGGAAAGAAACGACGATACAGTGA
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Coding sequence (CDS) from alignment at CM002457.1:110750..111335-

>rna1232 ID=rna1232|Name=rna1232|organism=Nannochloropsis gaditana|type=CDS|length=1020bp|location=Sequence derived from alignment at CM002457.1:110750..111335- (Nannochloropsis gaditana)
GAGAGGGAAAAGGAAAGAAAGGGATTCCAATATGGAGAAGGGGAAAAGAA
TATTTTGGGGGGGATAAAGGCTGCTACTTCCGGGTTGGAGTTGATAAACA
GAAAGTCCAAGACACACGGCGGCTCTCTCGGGACCCCTGTGGTCGCTTTA
CATCTTGCGAAAGGAGGAAGTGAAAGAGGAGGGGGGAGGGATAAAGGGAA
TGTAAAGGAGAAGAGAGATGGGGATGGAAAGAAGGAGATGATGAGCATGC
AAAGCCTCGTGGTGGTTCGAAACCAGCAAGTCGATGGGCAGTCATCAGCG
CGGGGACGGCAGGCGTTATGCATTGAAACCAGCAAGTGGACCAAGGGGGG
GAAAGAAACGACGATACAGTGAATGGTGCCAGACAAGTGTGTATTTGAGG
AGGGGGTATTAAATAAGCTTTGTGCGGTCTCGGAGAGAGCTGGAAACATC
GTGTGGAACATGCCCGCGGGAAGAAGCGAGCATTCCACCTTTACTGGTAA
TGAGATGGCTGAGAGGGAAAAGGAAAGAAAGGGATTCCAATATGGAGAAG
GGGAAAAGAATATTTTGGGGGGGATAAAGGCTGCTACTTCCGGGTTGGAG
TTGATAAACAGAAAGTCCAAGACACACGGCGGCTCTCTCGGGACCCCTGT
GGTCGCTTTACATCTTGCGAAAGGAGGAAGTGAAAGAGGAGGGGGGAGGG
ATAAAGGGAATGTAAAGGAGAAGAGAGATGGGGATGGAAAGAAGGAGATG
ATGAGCATGCAAAGCCTCGTGGTGGTTCGAAACCAGCAAGTCGATGGGCA
GTCATCAGCGCGGGGACGGCAGGCGTTATGCATTGAAACCAGCAAGTGGA
CCAAGGGGGGGAAAGAAACGACGATACAGTGAATGGTGCCAGACAAGTGT
GTATTTGAGGAGGGGGTATTAAATAAGCTTTGTGCGGTCTCGGAGAGAGC
TGGAAACATCGTGTGGAACATGCCCGCGGGAAGAAGCGAGCATTCCACCT
TTACTGGTAATGAGATGGCT
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Synonyms
Publications