rna1227, rna1227 (mRNA) Nannochloropsis gaditana

Overview
Namerna1227
Unique Namerna1227
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1867
Alignment locationCM002457.1:104007..104327 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100083g9.6782.mrna
Orig protein idgnl|cribi|Naga_100083g9.6782
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:104007..104327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100083g9gene1182Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29455.1cds1226Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1227rna1227-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1227 ID=rna1227|Name=rna1227|organism=Nannochloropsis gaditana|type=mRNA|length=1867bp
GTGCGATCGTGTCGTGGAAAGGAGATGTGTAAACATTTAAGTCGATAATG
CGGCAGAGTGCTCTGCTCGCTTTTTGTGTGGCTGAGTGGGCGGAGGGCGT
TACATGCGTCAAAAAGGTTATCGTACACTGGCGTGGGAGGAGAGCTGAAT
GTTTACCCGATTGCTTCATGCTTGGAAAGCATTCTTCTCGCGTGGATGCC
TGACGACTTTTGCCTCACGGTTGGCATGCGTTTTGGGGGCTTACAAGCTT
GATCATACCATACGCTTTACTACCTCCCCCCCCTCGTATCTAAGCTCTCT
CCCATATACTCGTGGTATTTTTTAACCCGCAACGCAAAATACAGGGATAC
GTCTCCGTTCCTGCTTTTTAGTTTATTTTCGTGCGCAAGTTTGCAGCTTG
CTGCGTTTTCGCATCGATCGTATGCTGAAAGTTGCGTCTCATTCCTTTTT
CTTCAAGGCTTTCATGATTGGCAGCTTAATCAGGGCTACAGCAGCTGAAA
TTTTCCACACTTCAGCTGCGTGTGCTTTAAGGGCTAGCCATGCTTGTCAT
CTTTCCCCAACTCTAGCATTTGCCTCGTTGAAAACCCTCAGCTCTACGTC
CAGAAGAAGACGGATCGGCCGGTACGGTGGCATGGCAACAATGGAGGCGA
GTGGCACTGATAGCGCAGCTCCAGGGAAGGCTGAACAACAGCCCGAGCGG
CGAAAGCGTGTGCTATCCGGCGTCCAGCCGACAGGATCATTGCACCTCGG
TAATTACTTAGGGGCAATTCGACAATGGGTCAAAAATCAAGACGAGTACG
AGTCTTTCTTTTGTGTCGTGGATCTTCACGCCATCACGGCACCCCACGAT
CCCAAACGCCTTCGGCAGGAGACCATCGAGGCCGCTGCCTTGTACCTGGC
TGCAGGTATCGATCCGAGTAAAAGCACGATTTTTGTCCAGTCCCACGTCT
TGGCCCATACCGAGCTGACCTGGTTGTTGAACTGCGTCACGCCTATGAAC
TGGTTGGAGCGCATGATTCAGTTCAAGGAAAAGGCGATCAAGCAAGGAGA
GAACGTCGGCGTGGGCCTTTTCGACTACCCGATCTTAATGGCTGCCGACA
TTTTGCTGTACCAGGCTGACTTGGTGCCCGTGGGGGAAGACCAACGGCAG
CACTTGGAGTTGACCCGCGATATAGCCCGACGTTTCAACGACCAATTCTG
CAACAAGAAGGCCAAAAGAAGAAAGGTGTTCCGAGACCCAGCGGCCTTGA
TCGTCACGGAAGGTGCCCGAGTGATGTCCCTCTTGGACGGAACTAGCAAG
ATGAGCAAAAGCGCGGAAAACGACGGGAGCCGCATCAATCTCTTGGACAG
CCCCGACACGATTCGCGCCAAAATCAAACGCTGCAAGACAGACGCGTCGC
TGGGCTTGGAATGGGACAACCCCGCCCGTCCGGAATGCACAAATTTGTTG
AACATCTACCTGGCCGTGACGGAAGGGGCGGGGGCGACGAAGGAGAGCGT
GTTGGAGGAGGTGGCGGGGATGAATTGGGGGGCGTTCAAACCTTTGTTGA
CCGAGGCCGTGGTGGCGCATTTGGAGCCGATCCAACGGAAGTACCGGGAG
GTGATGGAGGATCCCGAGCACATTGAAAAAATCTTGACCCGAGGTGCGAC
GGACGCCGACGCGATTGCGAGTCAGACGTTGGGATGGGCGAAGGACGCCA
TGGGCTTCTATTCGCTGGGCAGGAAGTGAGGAGCGGGGGAAGGGAGGGAG
GGAGGGAGGGCGGGGAGGGAGGGTGCTCGGATGCGTATGCGGGGACTTGG
CAGGGGCGTGCACTGATTTAACAAAGTTTATCCGCATGAAAGAAAGGAGT
TTAAGTGACTCAAGCAC
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protein sequence of rna1227

>rna1227-protein ID=rna1227-protein|Name=rna1227|organism=Nannochloropsis gaditana|type=polypeptide|length=106bp
MSGRKRWRPRVWGRIHVLIHFGVDFVTGNVSRRRYLSSEGGRAFGGVEAL
AQMPPERVNQSKGKGSKGECADMKEAFSDKRARRQEGESKGKKWNEEKRG
RRESDA
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mRNA from alignment at CM002457.1:104007..104327-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1227 ID=rna1227|Name=rna1227|organism=Nannochloropsis gaditana|type=mRNA|length=321bp|location=Sequence derived from alignment at CM002457.1:104007..104327- (Nannochloropsis gaditana)
ATGTCCGGAAGAAAGAGATGGCGCCCACGAGTATGGGGTCGAATACATGT
ACTGATACACTTTGGAGTGGATTTTGTTACTGGGAATGTGAGCAGGAGAA
GATACCTCTCAAGTGAAGGTGGGAGGGCTTTCGGAGGGGTAGAGGCCTTG
GCACAGATGCCTCCCGAAAGGGTTAACCAAAGCAAAGGGAAGGGCAGCAA
GGGGGAGTGTGCGGATATGAAAGAAGCATTTTCCGACAAACGGGCAAGAA
GACAAGAAGGGGAGAGCAAGGGGAAGAAATGGAACGAGGAGAAGAGAGGC
CGGAGGGAAAGCGATGCGTGA
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Coding sequence (CDS) from alignment at CM002457.1:104007..104327-

>rna1227 ID=rna1227|Name=rna1227|organism=Nannochloropsis gaditana|type=CDS|length=321bp|location=Sequence derived from alignment at CM002457.1:104007..104327- (Nannochloropsis gaditana)
ATGTCCGGAAGAAAGAGATGGCGCCCACGAGTATGGGGTCGAATACATGT
ACTGATACACTTTGGAGTGGATTTTGTTACTGGGAATGTGAGCAGGAGAA
GATACCTCTCAAGTGAAGGTGGGAGGGCTTTCGGAGGGGTAGAGGCCTTG
GCACAGATGCCTCCCGAAAGGGTTAACCAAAGCAAAGGGAAGGGCAGCAA
GGGGGAGTGTGCGGATATGAAAGAAGCATTTTCCGACAAACGGGCAAGAA
GACAAGAAGGGGAGAGCAAGGGGAAGAAATGGAACGAGGAGAAGAGAGGC
CGGAGGGAAAGCGATGCGTGA
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Synonyms
Publications