rna1224, rna1224 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1224
Unique Name	rna1224
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1090
Alignment location	CM002457.1:98959..101370 -

Link to JBrowse

Properties


Property Name	Value
Product	alpha-mannosyltransferase alg9
Orig transcript id	gnl\|cribi\|Naga_100083g12.6768.mrna
Orig protein id	gnl\|cribi\|Naga_100083g12.6768
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:98959..101370 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100083g12	gene1179	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29441.1	cds1223	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1224	rna1224-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:98959..101370-
coding sequence from alignment at CM002457.1:98959..101370-

mRNA sequence

>rna1224 ID=rna1224|Name=rna1224|organism=Nannochloropsis gaditana|type=mRNA|length=1090bp
TGTCCCCCCATTCCCAAAGCTTATTACCCCACCGTCAACGCACAGGCAAA
CCATTAGAAGTACAGCCCCTTCGAAAATATGTTGTTGCGGAATACATCAT
TTGCAGTGACCCTGGTACCGGTGATAACGGCATGGATGGCGGGTCTGGCT
GAGTCGTTCATTATTCCGTCGCGTGTCGTAACCCGATCGTCAGCCCTAAG
TATGTCACTGGGGCACCCGGAGCAGGCGCCATCGACGGCAACACGTGGTG
GGTACCTCGGAGCCGGAGGATTTTTGTTCGCCTCCTCGTTTCTCCTCTCC
CCATCTCCCAGCTGGGCACGCAATTTACCTTCCGGACCTAGCAAGGCCGA
ATTACTGGAAAAAACCCGGGCTAAGGACTCTGAGGATCCTGTCGAAAAGA
AAGCCCGGCTTGCGGCCTTGCGAAAAGAACGCTTGGAGCGTCAACGGCAA
CTCGATGCGGAAGAGGAGGCTCGTAAAAAGGATCCGAACCGTAAAGAGGT
AGATATCGACGCAAACTTGCGAGCTTCTTACTATTACCCCACCGCTCAAA
AACGCTATCTTCCCCGTGTCAAAGCTGCGGCAGATGCGTTGCCAGCGGCT
CGTGAAGCACTCCAAGCCGGGGAGTGGGAGAAGGTTGAGAGTTATGCAGC
CAAGGAAGCCGACAATGCCGCGCTCCCCTTGAAACTGTATGCATCCTCTC
TGACAGGACAAGGGCTATCGTTGGACGTCTCGTACGTCAAAGTGTTGAGC
CAACAAGGTGACGTGTATGGGAAGGAGCTAGAGAACTTCAAGAAAACGGT
GAAAAGCAGGGATACGACTAAGGCCTTGACGTCGCTAGGGAAGATGGAGT
CCGCCCTGGTACTCTACCGTAAGACAGCCAGGATTGACAAAGAAGACGGC
GGTGTAGGAGAATTCCCAACGGACACCAAGCTGGGTGCCAGCTTCGGGAA
CAATAACCCTACCCTGTACAAGAAGAAGTAATTAGCGTTGGAGCTTTGGG
AGGCGCGCAATAGGGATGTGGAAGAGCGGGGGGGATGTCACATATCGCAT
TAAGACCCGACTTAAAGAAAATCGTCATGACTGGGCAGCC

protein sequence of rna1224

>rna1224-protein ID=rna1224-protein|Name=rna1224|organism=Nannochloropsis gaditana|type=polypeptide|length=803bp
MIRKCEPHRRPVYALDTLPLSKNNTTRGQSPHAEARQASAGPKRKLRNPS
TPSNAGDDRSITTSTPSRRSSSASMGHTPPLRQFETATTPPSSRGHGAKN
ARGITDPPEAQGVLVSRVYGLLAGLTLVLVRVVGGIVTPIADCDETYNYW
EPVHYLLYGTGMQTWEYSPEYTLRSYAYLLPPAALAKAGALALRLFQGPL
LPDKRLLFYFLRVVFSLISASSEATFVDAVTRRFGARPGFLTFALLLTSA
GMFQASPALLPSSAASNFVMVTTACWLSRRYAWATLAAVTAVVGLGWPFV
ALLFLPLALHTLYEAVSHSPGPGFARQCRQGFLYVLSLGVAALVLVLPPV
LLVDGFFYRRCVLPVWSILRYNLGGAAVGADDTLYGVEPWSFYLKNLLLN
FNVVLPLVLLLPFLLLLVPPPAWPSAGRGTSFLFVAPAYLWLGVMTTRPH
KEERFLFPIYPLLALGGALSLHVVVGSMDRCLTKAAPLAVASAKGNKGGG
RKRNGRDKGPEQEGPPRPPLAGLLHRLAHMAVRGMMPLALLLHALLSLSR
AVSMTQNFSAPLRLFDDFSKHQRAEYFKAAAPVAASKSADPSPDPSPPPV
RPARLCLGAEWYRFPSSFFLPHAHVHLAFVRAGFGGQLPQPFRAENGTWA
PPLQAFNAHNLEEKARYVPIHSCRYLVELFPPAPGGVRDQGVPEPSTGAA
GEGDSKERARAQEEATSEDERIVHDVEWIDRRLRELGEARPVAWRILRHY
PLLDKALSPSPWRAFWVPFGGASRLHYGAFTLLEREEEDDFDPGPWSELG
FIQ

mRNA from alignment at CM002457.1:98959..101370-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1224 ID=rna1224|Name=rna1224|organism=Nannochloropsis gaditana|type=mRNA|length=2412bp|location=Sequence derived from alignment at CM002457.1:98959..101370- (Nannochloropsis gaditana)
ATGATACGTAAATGTGAACCTCACCGACGCCCGGTGTACGCACTCGATAC
TCTACCACTATCTAAAAACAATACTACGCGGGGCCAGTCCCCACATGCTG
AAGCACGGCAGGCAAGCGCGGGTCCCAAACGAAAATTACGCAACCCATCA
ACTCCATCCAATGCTGGTGATGACAGAAGCATCACCACTAGTACTCCCAG
CCGGCGGTCATCCTCCGCGTCGATGGGACACACCCCACCATTGCGCCAAT
TCGAAACAGCAACAACACCGCCGTCTTCAAGAGGACATGGGGCGAAGAAC
GCACGGGGTATCACGGATCCGCCCGAAGCACAGGGAGTGCTCGTGTCGCG
CGTGTACGGTCTGTTAGCTGGGCTGACCTTGGTGCTGGTACGCGTGGTGG
GAGGGATCGTTACTCCCATCGCGGACTGCGACGAAACCTACAACTATTGG
GAACCTGTGCATTACCTTCTCTATGGCACGGGGATGCAAACCTGGGAGTA
TTCTCCCGAGTACACGTTGCGGTCCTACGCTTACCTCCTGCCGCCTGCCG
CGCTGGCCAAAGCCGGTGCTCTGGCCCTGCGACTCTTCCAAGGGCCTTTG
CTCCCGGACAAGCGCCTTTTATTTTATTTCCTTCGGGTCGTGTTCTCCTT
GATCTCGGCCAGCTCCGAAGCCACCTTTGTCGATGCCGTCACCCGGCGCT
TCGGTGCCCGCCCCGGATTTTTGACCTTCGCGCTCCTCCTCACGTCTGCG
GGGATGTTCCAAGCCTCCCCCGCCCTTCTCCCCTCCAGCGCGGCCAGCAA
TTTCGTCATGGTGACCACGGCTTGTTGGCTGTCGCGTCGGTACGCATGGG
CCACGCTGGCCGCCGTCACTGCCGTCGTGGGCCTGGGTTGGCCCTTTGTG
GCACTCCTCTTCCTCCCCCTGGCGCTGCACACGCTCTACGAGGCCGTGTC
CCACAGTCCCGGTCCGGGTTTTGCCCGGCAATGTCGCCAGGGCTTCCTCT
ATGTCCTGTCCTTGGGGGTAGCGGCCCTGGTCCTCGTCCTTCCCCCCGTC
CTGCTCGTGGACGGCTTCTTTTACCGTCGCTGTGTGCTCCCAGTCTGGAG
CATCCTTCGCTATAACCTGGGAGGGGCCGCGGTAGGCGCAGACGATACTC
TTTACGGAGTAGAACCCTGGTCTTTTTATTTGAAAAATTTGCTCCTAAAT
TTCAATGTGGTGCTGCCCCTGGTCCTCCTTTTGCCTTTCCTCCTCCTCCT
CGTCCCCCCGCCCGCGTGGCCCTCTGCGGGAAGAGGGACTTCCTTCCTCT
TTGTCGCCCCTGCGTATTTATGGTTAGGCGTCATGACCACGCGTCCTCAC
AAAGAGGAACGGTTCCTTTTCCCCATCTACCCCCTGTTAGCCTTGGGCGG
GGCCCTCTCCTTGCACGTCGTGGTGGGCTCCATGGACCGATGCCTGACAA
AGGCGGCACCGCTGGCAGTCGCCTCCGCCAAGGGCAACAAAGGCGGGGGT
AGAAAACGGAACGGTCGCGACAAAGGTCCGGAACAGGAGGGTCCACCTCG
CCCGCCTCTCGCTGGTCTCCTACACCGCCTTGCTCACATGGCTGTCCGAG
GAATGATGCCTCTCGCCCTCCTCCTCCATGCCCTCCTTTCCCTCTCCCGC
GCGGTTTCGATGACCCAAAATTTTTCCGCACCCCTCCGTCTCTTCGACGA
TTTTTCCAAGCACCAACGGGCAGAGTATTTCAAGGCGGCGGCGCCCGTGG
CTGCATCGAAATCTGCCGATCCCTCTCCCGATCCCTCCCCGCCTCCGGTG
CGGCCGGCCCGTCTCTGTCTGGGCGCCGAATGGTACCGATTCCCTTCTTC
GTTTTTCCTACCCCATGCCCACGTCCATCTTGCGTTCGTTCGCGCCGGCT
TTGGGGGCCAACTCCCACAGCCATTTCGAGCCGAAAACGGGACATGGGCC
CCTCCCTTGCAAGCCTTCAACGCGCACAATCTGGAAGAGAAGGCCCGCTA
CGTCCCCATCCACTCCTGCCGTTACTTGGTGGAGCTCTTTCCTCCCGCGC
CGGGAGGAGTCAGGGACCAGGGGGTTCCGGAGCCGTCCACGGGAGCGGCC
GGAGAAGGAGACAGCAAGGAGCGAGCACGTGCCCAAGAAGAGGCTACCTC
CGAAGACGAACGGATCGTACACGATGTAGAATGGATAGACCGGCGGCTTC
GGGAGCTGGGGGAGGCTCGACCAGTGGCCTGGCGGATTCTTCGGCACTAC
CCTTTGTTGGATAAAGCTTTATCGCCCTCGCCATGGCGTGCTTTCTGGGT
CCCCTTCGGAGGGGCGTCGCGTTTGCATTACGGAGCATTCACTTTGCTTG
AGCGAGAGGAAGAAGATGACTTTGATCCCGGTCCTTGGTCGGAGCTGGGA
TTTATCCAATAA

Coding sequence (CDS) from alignment at CM002457.1:98959..101370-

>rna1224 ID=rna1224|Name=rna1224|organism=Nannochloropsis gaditana|type=CDS|length=2412bp|location=Sequence derived from alignment at CM002457.1:98959..101370- (Nannochloropsis gaditana)
ATGATACGTAAATGTGAACCTCACCGACGCCCGGTGTACGCACTCGATAC
TCTACCACTATCTAAAAACAATACTACGCGGGGCCAGTCCCCACATGCTG
AAGCACGGCAGGCAAGCGCGGGTCCCAAACGAAAATTACGCAACCCATCA
ACTCCATCCAATGCTGGTGATGACAGAAGCATCACCACTAGTACTCCCAG
CCGGCGGTCATCCTCCGCGTCGATGGGACACACCCCACCATTGCGCCAAT
TCGAAACAGCAACAACACCGCCGTCTTCAAGAGGACATGGGGCGAAGAAC
GCACGGGGTATCACGGATCCGCCCGAAGCACAGGGAGTGCTCGTGTCGCG
CGTGTACGGTCTGTTAGCTGGGCTGACCTTGGTGCTGGTACGCGTGGTGG
GAGGGATCGTTACTCCCATCGCGGACTGCGACGAAACCTACAACTATTGG
GAACCTGTGCATTACCTTCTCTATGGCACGGGGATGCAAACCTGGGAGTA
TTCTCCCGAGTACACGTTGCGGTCCTACGCTTACCTCCTGCCGCCTGCCG
CGCTGGCCAAAGCCGGTGCTCTGGCCCTGCGACTCTTCCAAGGGCCTTTG
CTCCCGGACAAGCGCCTTTTATTTTATTTCCTTCGGGTCGTGTTCTCCTT
GATCTCGGCCAGCTCCGAAGCCACCTTTGTCGATGCCGTCACCCGGCGCT
TCGGTGCCCGCCCCGGATTTTTGACCTTCGCGCTCCTCCTCACGTCTGCG
GGGATGTTCCAAGCCTCCCCCGCCCTTCTCCCCTCCAGCGCGGCCAGCAA
TTTCGTCATGGTGACCACGGCTTGTTGGCTGTCGCGTCGGTACGCATGGG
CCACGCTGGCCGCCGTCACTGCCGTCGTGGGCCTGGGTTGGCCCTTTGTG
GCACTCCTCTTCCTCCCCCTGGCGCTGCACACGCTCTACGAGGCCGTGTC
CCACAGTCCCGGTCCGGGTTTTGCCCGGCAATGTCGCCAGGGCTTCCTCT
ATGTCCTGTCCTTGGGGGTAGCGGCCCTGGTCCTCGTCCTTCCCCCCGTC
CTGCTCGTGGACGGCTTCTTTTACCGTCGCTGTGTGCTCCCAGTCTGGAG
CATCCTTCGCTATAACCTGGGAGGGGCCGCGGTAGGCGCAGACGATACTC
TTTACGGAGTAGAACCCTGGTCTTTTTATTTGAAAAATTTGCTCCTAAAT
TTCAATGTGGTGCTGCCCCTGGTCCTCCTTTTGCCTTTCCTCCTCCTCCT
CGTCCCCCCGCCCGCGTGGCCCTCTGCGGGAAGAGGGACTTCCTTCCTCT
TTGTCGCCCCTGCGTATTTATGGTTAGGCGTCATGACCACGCGTCCTCAC
AAAGAGGAACGGTTCCTTTTCCCCATCTACCCCCTGTTAGCCTTGGGCGG
GGCCCTCTCCTTGCACGTCGTGGTGGGCTCCATGGACCGATGCCTGACAA
AGGCGGCACCGCTGGCAGTCGCCTCCGCCAAGGGCAACAAAGGCGGGGGT
AGAAAACGGAACGGTCGCGACAAAGGTCCGGAACAGGAGGGTCCACCTCG
CCCGCCTCTCGCTGGTCTCCTACACCGCCTTGCTCACATGGCTGTCCGAG
GAATGATGCCTCTCGCCCTCCTCCTCCATGCCCTCCTTTCCCTCTCCCGC
GCGGTTTCGATGACCCAAAATTTTTCCGCACCCCTCCGTCTCTTCGACGA
TTTTTCCAAGCACCAACGGGCAGAGTATTTCAAGGCGGCGGCGCCCGTGG
CTGCATCGAAATCTGCCGATCCCTCTCCCGATCCCTCCCCGCCTCCGGTG
CGGCCGGCCCGTCTCTGTCTGGGCGCCGAATGGTACCGATTCCCTTCTTC
GTTTTTCCTACCCCATGCCCACGTCCATCTTGCGTTCGTTCGCGCCGGCT
TTGGGGGCCAACTCCCACAGCCATTTCGAGCCGAAAACGGGACATGGGCC
CCTCCCTTGCAAGCCTTCAACGCGCACAATCTGGAAGAGAAGGCCCGCTA
CGTCCCCATCCACTCCTGCCGTTACTTGGTGGAGCTCTTTCCTCCCGCGC
CGGGAGGAGTCAGGGACCAGGGGGTTCCGGAGCCGTCCACGGGAGCGGCC
GGAGAAGGAGACAGCAAGGAGCGAGCACGTGCCCAAGAAGAGGCTACCTC
CGAAGACGAACGGATCGTACACGATGTAGAATGGATAGACCGGCGGCTTC
GGGAGCTGGGGGAGGCTCGACCAGTGGCCTGGCGGATTCTTCGGCACTAC
CCTTTGTTGGATAAAGCTTTATCGCCCTCGCCATGGCGTGCTTTCTGGGT
CCCCTTCGGAGGGGCGTCGCGTTTGCATTACGGAGCATTCACTTTGCTTG
AGCGAGAGGAAGAAGATGACTTTGATCCCGGTCCTTGGTCGGAGCTGGGA
TTTATCCAATAA

Synonyms

Publications