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Properties
| Property Name | Value |
|---|
| Product | Carotenoid oxygenase |
| Orig transcript id | gnl|cribi|Naga_100083g22.6780.mrna |
| Orig protein id | gnl|cribi|Naga_100083g22.6780 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:73433..76598 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1215 ID=rna1215|Name=rna1215|organism=Nannochloropsis gaditana|type=mRNA|length=2668bp
AAACACATGCTCACGACCTCACACCCCATTCCATCCCCTAGGAGACCCAA
CCTTTCGTGCAGCAGATACTTAATGCCACCAAGACGTCAAGCACGCCCGT
GGGGGTTTTCATTACATTCACTCCCTCCCTGGCTCTTCCTTTCTGCCGGG
GCCACGCTGGCTTTACCTCCTCCCGTGGGGTCTGGCATTGCTTTTGCACG
CCTTTCTTCATGGAACACTTGTCATTTCTCTGTGTTTTCAAGATCTATCA
CACACAAAACGTCGCATCCGAGTATATTACCAGGGACCTTCCATAAGTAT
TACCTCTCAGGCATAGGATCTGCTTCCTCCTCCATCTTGGCTAGTACATT
GTCCACGGCCCCGTCACCGCCAGAAGACATCGCGGAGGCCTTGAAAGAGC
GACCTTGGCGAACAGGCTTGGAGCCGGCAGAAGACGTTGATTTGATCGAG
TTATCGGCAGCATGCATTGAGGGTACCGTGCCCTCCGACCTCGTAGGCAC
CTTGTATCGCAATGGGGCAGGGCGCATCCGGGTCGGCGCCTCCCCCACAC
TCCGTTATAGCCACTGGTTCGACGGAGACGGTATGGTGTCCGCCTTTACC
TTTACCGCGGATGGTCGCTGTATTTTCAGGCAGAGGTATTTGCAAGGAAA
GAAATTTTTGGCCCAAAAGAACGCGAAAGAAGGCGCCTGGGGGGGTCGAG
GGGTATGGACGCAGCGAGGGGGCCGGGAGGGAAAGTGGTGGGAGAATATG
GGGCGTATCCCGGACAATCCCTTGAACACAAACGTACTGGTGCTGGAAGG
GGCGAAGGAGGGAGGGACGACGAGGACCTTGGCCCTCTGTGAGGGTGGTC
TCCCTTTTGAATTCGACCCCGTGAGCTTGGCCGTGCGAAGGGAGCCGGAA
GATTTCGCCGGACCCCATGGACGGCTTTCCTCCTTCTTCTCCGCCCATCC
CAAGGTAGACCCCGACACGGGCATTCTGTACAATTTTGGCATGCTCCTGG
GCCCCAGTCTGGCCCTCAACATCTTCGAAATTTCCTCTCCCTCGTCCTCC
CCCTCCGCCCAGCCCGTCCTCCTCCGGCAAAGATCCTTTCCCCTCGCCTT
TATCCCCACAGTGCACGATTTTGTCCTGGCCGGGCGCTTCCTGATCATTT
TCTTCAGCCCATTTCAGGCTCCTCCTTCTGCCCTGGCGCGAGCCCTCCTC
GGGCTCTCCTCCTTGGGCGGACAGTATGTGTGGAAAAACGGCGGGAAAAC
TCAGGCCTGGGTGGTGGAGAAATCGACGCTGCGGCGTGTGGCGGAGGTAG
ACATCGATCCACCCTTTTCAAACTACCATTTTGTGAACGCGTGGGAAAAG
GAGGGAGGCAATGGGGAAGGGAGGAAGACAGGAGATGGGGACGTCGAGGT
CGAAGTCTTGGTCGCGCAGCACCGATCCCCACGGGAGAAGGTGGAGGAGC
AGTTTCGTGACATGTACAGGGCGGATTTCACTCCCGAGCTGGAATGTGAG
ACATGGCGATACGTCCTTCGTTTTGCGTACGAGGAGGGCGGGGAGGAGGG
CGGGGAGGAGGGCGGGACGGAGGACCCGCAGGAGCAGGACGGTCGAGACT
CGAGTGTCAGGCGGGCCCGAGTGGTCGAGGCGGGGCCGATGCCTTTGGCT
GCGTCGTCGTATGGCTACGAGCTCCCAACGCTGAACCCTTGCACGGTGGG
AAAAAAGGGAAGGTTCGCCTATGTGAATGCCTTGGTACGGGAGGAAGGCT
TCGTGGATTCTGTGGCCAAGCTGCATTTGGACGCAGGAGGGAGAATGGAG
GTGCACCGGTCCTGTCTACCTCCGGGTTGTTTTGCCGGGGAGGCGGTCTT
CGTACCGCGAGGAGGCAGGGACAAGGAAGAAGGGACGGGGAGGCAAGAGG
AGGATGACGGTTACTTGTTGTTTTACGTGCTGGATACGCGGCGACAGGCG
TCGGACCTGGTCATACTCGATGCCCAGCGCATGGAGAGGCCGCCCTTGGC
AGTGATCCATCTCCCTGTGCGGGTGCCGTACTCCTACCACGGAGTCTGGA
CAACCGCGACGTTCGGGCTGGGGCAGTGAACATGGAAGGGCGGGATCTCG
GTGGGAATCGCCAGGCAAGTAAGAAGCAAGTCGAGTGTCGTGGAGCATGT
GGGTACTCTGCACGGTGCCTAGGGTGCCTGCACGGCGAAGATGCGATGAC
ACGGCGGAAGCGTGAGGGGCGGAGGGCATGTACAAAGAAGGAGGCAGTGG
GCTTCAAAGGGGCATCTGGCAAGGGAAAGGAGGAGGCGGGGGCGAGTGAA
GCGGGTTTGTACGCAAGGCAAAATGTGTGTGTGAGGGTGTGCTCACTGGG
CGTGGAGACAGGGGAAGTGAGAGTGTACAGAAAGGGGAAAACCACAGGAG
GAAGAATACGGACAGAAGAGGACTACCTTGACGCGATGTCCGAGGCGCAA
GCCAGGAAGAAGCAAGTAATCTCAGGACAATTTATGCGTTGTTCGGGGCA
TCGCCTGCTTCAAGAGTCCTTCCATCCGTGTCGGTGACTTTCAAAATCGG
TCGAAAGACGGATCTGTAAATCCTTTTTTTACGTGCGCAAACTCTTGCAC
TATGCAGAAAGCGGGCCCAGGAGGGTTCACTGAGCAAAAGATCAAAAAGG
AAATCCCGGCAACGATGG back to topprotein sequence of rna1215 >rna1215-protein ID=rna1215-protein|Name=rna1215|organism=Nannochloropsis gaditana|type=polypeptide|length=362bp
MLLGPSLALNIFEISSPSSSPSAQPVLLRQRSFPLAFIPTVHDFVLAGRF
LIIFFSPFQAPPSALARALLGLSSLGGQYVWKNGGKTQAWVVEKSTLRRV
AEVDIDPPFSNYHFVNAWEKEGGNGEGRKTGDGDVEVEVLVAQHRSPREK
VEEQFRDMYRADFTPELECETWRYVLRFAYEEGGEEGGEEGGTEDPQEQD
GRDSSVRRARVVEAGPMPLAASSYGYELPTLNPCTVGKKGRFAYVNALVR
EEGFVDSVAKLHLDAGGRMEVHRSCLPPGCFAGEAVFVPRGGRDKEEGTG
RQEEDDGYLLFYVLDTRRQASDLVILDAQRMERPPLAVIHLPVRVPYSYH
GVWTTATFGLGQ back to topmRNA from alignment at CM002457.1:73433..76598- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1215 ID=rna1215|Name=rna1215|organism=Nannochloropsis gaditana|type=mRNA|length=3166bp|location=Sequence derived from alignment at CM002457.1:73433..76598- (Nannochloropsis gaditana)
AAACACATGCTCACGACCTCACACCCCATTCCATCCCCTAGGAGACCCAA
CCTTTCGTGCAGCAGATACTTAATGCCACCAAGACGTCAAGCACGCCCGT
GGGGGTTTTCATTACATTCACTCCCTCCCTGGCTCTTCCTTTCTGCCGGG
GCCACGCTGGCTTTACCTCCTCCCGTGGGGTCTGGCATTGCTTTTGCACG
CCTTTCTTCATGGAACACTTGTCATTTCTCTGTGTTTTCAAGATCTATCA
CACACAAAACGTCGCATCCGAGTATATTACCAGGGACCTTCCATAAGTAT
TACCTCTCAGGCATAGGATCTGCTTCCTCCTCCATCTTGGCTAGTACATT
GTCCACGGCCCCGTCACCGCCAGAAGACATCGCGGAGGCCTTGAAAGAGC
GACCTTGGCGAACAGGCTTGGAGCCGGCAGAAGACGTTGATTTGATCGAG
TTATCGGCAGCATGCATTGAGGTACGTGGGATTCCAATCTCGCACATAAT
GAAAAACTTATGCGTTGATTTTTGGCTGCCCAGGCACACAAATTTCGGAG
CACCCTCAAAGCTTATTTAAACCATCGATCGATGACCCTCTCTCACACAT
GGCGCTTCTTTTTCCGTTCCAGGGTACCGTGCCCTCCGACCTCGTAGGCA
CCTTGTATCGCAATGGGGCAGGGCGCATCCGGGTCGGCGCCTCCCCCACA
CTCCGTTATAGCCACTGGTTCGACGGAGACGGTATGGTGTCCGCCTTTAC
CTTTACCGCGGATGGTCGCTGTATTTTCAGGCAGAGGTATTTGCAAGGAA
AGAAATTTTTGGCCCAAAAGAACGCGAAAGAAGGCGCCTGGGGGGGTCGA
GGGGTATGGACGCAGCGAGGGGGCCGGGAGGGAAAGTGGTGGGAGAATAT
GGGGCGTATCCCGGACAATCCCTTGAACACAAACGTACTGGTGCTGGAAG
GGGCGAAGGAGGGAGGGACGACGAGGACCTTGGCCCTCTGTGAGGGTGGT
CTCCCTTTTGAATTCGACCCCGTGAGCTTGGCCGTGCGAAGGGAGCCGGA
AGATTTCGGTGAGTGCTGGGGCTCGGCGGGTGGGGCTGACGATATTCCCA
GGATATACATCCTGACGTTAAGGGCTGGCCTAGACCGGAGAGGGTACGGG
TCTGCAGAGGAAGTCTTTCGGCGCGACCAGTGGAAGATGAGGGAAAAGGA
CTCGGAACCCAGAGGCCTGCGCATGTTGTGTTCGGCCCATGTCTAGGCCT
GGGGCGTCCAAGGGGCCGTCCCAGACAGGGTGACATAGGCTCATTTGCTG
CCTGTACGTGCGTCCCCTGCACGCTTTTCTTAACGCGACGCTCCACCGCC
TCCCTCTTCCTTTCTCCCCCGCCTTGATCCCTATCCTCCTTCCCCCTTGC
CACAGCCGGACCCCATGGACGGCTTTCCTCCTTCTTCTCCGCCCATCCCA
AGGTAGACCCCGACACGGGCATTCTGTACAATTTTGGCATGCTCCTGGGC
CCCAGTCTGGCCCTCAACATCTTCGAAATTTCCTCTCCCTCGTCCTCCCC
CTCCGCCCAGCCCGTCCTCCTCCGGCAAAGATCCTTTCCCCTCGCCTTTA
TCCCCACAGTGCACGATTTTGTCCTGGCCGGGCGCTTCCTGATCATTTTC
TTCAGCCCATTTCAGGCTCCTCCTTCTGCCCTGGCGCGAGCCCTCCTCGG
GCTCTCCTCCTTGGGCGGACAGTATGTGTGGAAAAACGGCGGGAAAACTC
AGGCCTGGGTGGTGGAGAAATCGACGCTGCGGCGTGTGGCGGAGGTAGAC
ATCGATCCACCCTTTTCAAACTACCATTTTGTGAACGCGTGGGAAAAGGA
GGGAGGCAATGGGGAAGGGAGGAAGACAGGAGATGGGGACGTCGAGGTCG
AAGTCTTGGTCGCGCAGCACCGATCCCCACGGGAGAAGGTGGAGGAGCAG
TTTCGTGACATGTACAGGGCGGATTTCACTCCCGAGCTGGAATGTGAGAC
ATGGCGATACGTCCTTCGTTTTGCGTACGAGGAGGGCGGGGAGGAGGGCG
GGGAGGAGGGCGGGACGGAGGACCCGCAGGAGCAGGACGGTCGAGACTCG
AGTGTCAGGCGGGCCCGAGTGGTCGAGGCGGGGCCGATGCCTTTGGCTGC
GTCGTCGTATGGCTACGAGCTCCCAACGCTGAACCCTTGCACGGTGGGAA
AAAAGGGAAGGTTCGCCTATGTGAATGCCTTGGTACGGGAGGAAGGCTTC
GTGGATTCTGTGGCCAAGCTGCATTTGGACGCAGGAGGGAGAATGGAGGT
GCACCGGTCCTGTCTACCTCCGGGTTGTTTTGCCGGGGAGGCGGTCTTCG
TACCGCGAGGAGGCAGGGACAAGGAAGAAGGGACGGGGAGGCAAGAGGAG
GATGACGGTTACTTGTTGTTTTACGTGCTGGATACGCGGCGACAGGCGTC
GGACCTGGTCATACTCGATGCCCAGCGCATGGAGAGGCCGCCCTTGGCAG
TGATCCATCTCCCTGTGCGGGTGCCGTACTCCTACCACGGAGTCTGGACA
ACCGCGACGTTCGGGCTGGGGCAGTGAACATGGAAGGGCGGGATCTCGGT
GGGAATCGCCAGGCAAGTAAGAAGCAAGTCGAGTGTCGTGGAGCATGTGG
GTACTCTGCACGGTGCCTAGGGTGCCTGCACGGCGAAGATGCGATGACAC
GGCGGAAGCGTGAGGGGCGGAGGGCATGTACAAAGAAGGAGGCAGTGGGC
TTCAAAGGGGCATCTGGCAAGGGAAAGGAGGAGGCGGGGGCGAGTGAAGC
GGGTTTGTACGCAAGGCAAAATGTGTGTGTGAGGGTGTGCTCACTGGGCG
TGGAGACAGGGGAAGTGAGAGTGTACAGAAAGGGGAAAACCACAGGAGGA
AGAATACGGACAGAAGAGGACTACCTTGACGCGATGTCCGAGGCGCAAGC
CAGGAAGAAGCAAGTAATCTCAGGACAATTTATGCGTTGTTCGGGGCATC
GCCTGCTTCAAGAGTCCTTCCATCCGTGTCGGTGACTTTCAAAATCGGTC
GAAAGACGGATCTGTAAATCCTTTTTTTACGTGCGCAAACTCTTGCACTA
TGCAGAAAGCGGGCCCAGGAGGGTTCACTGAGCAAAAGATCAAAAAGGAA
ATCCCGGCAACGATGG back to topCoding sequence (CDS) from alignment at CM002457.1:73433..76598- >rna1215 ID=rna1215|Name=rna1215|organism=Nannochloropsis gaditana|type=CDS|length=1089bp|location=Sequence derived from alignment at CM002457.1:73433..76598- (Nannochloropsis gaditana)
ATGCTCCTGGGCCCCAGTCTGGCCCTCAACATCTTCGAAATTTCCTCTCC
CTCGTCCTCCCCCTCCGCCCAGCCCGTCCTCCTCCGGCAAAGATCCTTTC
CCCTCGCCTTTATCCCCACAGTGCACGATTTTGTCCTGGCCGGGCGCTTC
CTGATCATTTTCTTCAGCCCATTTCAGGCTCCTCCTTCTGCCCTGGCGCG
AGCCCTCCTCGGGCTCTCCTCCTTGGGCGGACAGTATGTGTGGAAAAACG
GCGGGAAAACTCAGGCCTGGGTGGTGGAGAAATCGACGCTGCGGCGTGTG
GCGGAGGTAGACATCGATCCACCCTTTTCAAACTACCATTTTGTGAACGC
GTGGGAAAAGGAGGGAGGCAATGGGGAAGGGAGGAAGACAGGAGATGGGG
ACGTCGAGGTCGAAGTCTTGGTCGCGCAGCACCGATCCCCACGGGAGAAG
GTGGAGGAGCAGTTTCGTGACATGTACAGGGCGGATTTCACTCCCGAGCT
GGAATGTGAGACATGGCGATACGTCCTTCGTTTTGCGTACGAGGAGGGCG
GGGAGGAGGGCGGGGAGGAGGGCGGGACGGAGGACCCGCAGGAGCAGGAC
GGTCGAGACTCGAGTGTCAGGCGGGCCCGAGTGGTCGAGGCGGGGCCGAT
GCCTTTGGCTGCGTCGTCGTATGGCTACGAGCTCCCAACGCTGAACCCTT
GCACGGTGGGAAAAAAGGGAAGGTTCGCCTATGTGAATGCCTTGGTACGG
GAGGAAGGCTTCGTGGATTCTGTGGCCAAGCTGCATTTGGACGCAGGAGG
GAGAATGGAGGTGCACCGGTCCTGTCTACCTCCGGGTTGTTTTGCCGGGG
AGGCGGTCTTCGTACCGCGAGGAGGCAGGGACAAGGAAGAAGGGACGGGG
AGGCAAGAGGAGGATGACGGTTACTTGTTGTTTTACGTGCTGGATACGCG
GCGACAGGCGTCGGACCTGGTCATACTCGATGCCCAGCGCATGGAGAGGC
CGCCCTTGGCAGTGATCCATCTCCCTGTGCGGGTGCCGTACTCCTACCAC
GGAGTCTGGACAACCGCGACGTTCGGGCTGGGGCAGTGA back to top
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