rna1204, rna1204 (mRNA) Nannochloropsis gaditana

Overview
Namerna1204
Unique Namerna1204
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length687
Alignment locationCM002457.1:49869..50370 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100449g6.9455.mrna
Orig protein idgnl|cribi|Naga_100449g6.9455
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:49869..50370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100449g6gene1159Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1204rna1204-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29467.1cds1203Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1204 ID=rna1204|Name=rna1204|organism=Nannochloropsis gaditana|type=mRNA|length=687bp
ATGCGCACCGTATGCCTTTTCATTGCCAGCCTGGGCTTCGCATCTGCTTT
CCTTGCCCCCGTTCCGTCCTTCACTCCCACGCGCATTCGCACGACGCAAA
CCTCCATGATGCTTTCTCCTGAGGACATTGCCACAGGAACTAGCAATCTC
TTGGCCATCGTGAAGGAGAATGATGTCTTCGTGAAGAACGCTGGAGACTA
TCCGTGGGGCTCCGTGCAAGCACCTGGCTGGGCTTTGCCCGTTGCGGCCA
TCGCCACACTTTCTTTCGGTGTCATCATTCCTCTTGTCCTCAAGCCCGGC
GTAGATGCCTTCAATACTGGTGGTGCCAAAGGGGCGGAGAAGATAGCTTC
CTCCACAAAAGCCTCATCTCGCCCAGGGGCGAAGCCAGCAGCGGGGAAGG
CTGGAAAACGTGTTATGGCAAAGGGAGGAGTCCCTAAGAAGAATGACCGA
GACTTTCTCGGAGCACGGAATGTGGCGGTAGGGATGCCTGGAATCCCGGG
CCAAAAACGAAGTGAAGAGAAGTTCGGTTCTTGGTGTGTGCAGGCAGCAG
AAAGAAAATCACACACCCTCTGTCTACTGACTTTCGACAAGAGAAGAGCA
ACTTTCAGAAAATATTATGACGAAAAGAAACTTTCACAGCGTGATCGCTT
TATGATGGAAAACTTCAGTTGGCTGTTGCTTCACTAA
back to top

protein sequence of rna1204

>rna1204-protein ID=rna1204-protein|Name=rna1204|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MPRHDPLFFQPFLQHGSLHHEPRLDITVPEGAHCHHTLLVRALFRASLFD
AFFRFLFDLSCDTFSSTSTLWGGIRSLHDFADVRPHTDRLGRRCHPVVFV
LYTPPAAPLSGTWSFDQGRHG
back to top

mRNA from alignment at CM002457.1:49869..50370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1204 ID=rna1204|Name=rna1204|organism=Nannochloropsis gaditana|type=mRNA|length=502bp|location=Sequence derived from alignment at CM002457.1:49869..50370- (Nannochloropsis gaditana)
ATGCCACGTCATGACCCTCTCTTTTTCCAACCCTTCTTACAGCATGGATC
CTTACATCATGAACCGCGTCTGGACATCACCGTTCCCGAGGGTGCCCATT
GCCATCACACCCTCCTTGTCCGAGCTCTCTTCCGCGCCTCTCTCTTCGAC
GCCTTCTTCCGCTTCCTCTTCGACTTATCCTGTGACACCTTCAGCAGCAC
TTCGACCCTTTGGGGTGGAATACGAAGCCTACATGACTTTGCTGACGTGC
GCCCTCATACTGATCGTCTGGGTAGGAGGTGTCATCCTGTGGTATTTGTA
CTGTATACGCCGCCCGCCGCGCCTCTTTCGGGGTGAGTGACGCGCGAAAG
CCTGCCATTCCCCCCCATTCTCCCTCCCTTTTCTCTTCGAGTCCGGGATA
CGTATGATTCCTTGCTCCTCCGGTCCTCCCTCCCACCTCCCCCCATTCCC
TCCCTTCTCCTCCCTCAGGACGTGGTCATTTGATCAGGGCCGTCACGGAT
GA
back to top

Coding sequence (CDS) from alignment at CM002457.1:49869..50370-

>rna1204 ID=rna1204|Name=rna1204|organism=Nannochloropsis gaditana|type=CDS|length=732bp|location=Sequence derived from alignment at CM002457.1:49869..50370- (Nannochloropsis gaditana)
GACGTGGTCATTTGATCAGGGCCGTCACGGATGAATGCCACGTCATGACC
CTCTCTTTTTCCAACCCTTCTTACAGCATGGATCCTTACATCATGAACCG
CGTCTGGACATCACCGTTCCCGAGGGTGCCCATTGCCATCACACCCTCCT
TGTCCGAGCTCTCTTCCGCGCCTCTCTCTTCGACGCCTTCTTCCGCTTCC
TCTTCGACTTATCCTGTGACACCTTCAGCAGCACTTCGACCCTTTGGGGT
GGAATACGAAGCCTACATGACTTTGCTGACGTGCGCCCTCATACTGATCG
TCTGGGTAGGAGGTGTCATCCTGTGGTATTTGTACTGTATACGCCGCCCG
CCGCGCCTCTTTCGGGGACGTGGTCATTTGATCAGGGCCGTCACGGATGA
ATGCCACGTCATGACCCTCTCTTTTTCCAACCCTTCTTACAGCATGGATC
CTTACATCATGAACCGCGTCTGGACATCACCGTTCCCGAGGGTGCCCATT
GCCATCACACCCTCCTTGTCCGAGCTCTCTTCCGCGCCTCTCTCTTCGAC
GCCTTCTTCCGCTTCCTCTTCGACTTATCCTGTGACACCTTCAGCAGCAC
TTCGACCCTTTGGGGTGGAATACGAAGCCTACATGACTTTGCTGACGTGC
GCCCTCATACTGATCGTCTGGGTAGGAGGTGTCATCCTGTGGTATTTGTA
CTGTATACGCCGCCCGCCGCGCCTCTTTCGGG
back to top
Synonyms
Publications