rna1200, rna1200 (mRNA) Nannochloropsis gaditana

Overview
Namerna1200
Unique Namerna1200
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1317
Alignment locationCM002457.1:31815..33030 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100128g10.9403.mrna
Orig protein idgnl|cribi|Naga_100128g10.9403
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:31815..33030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100128g10gene1154Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1200rna1200-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29481.1cds1199Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1200 ID=rna1200|Name=rna1200|organism=Nannochloropsis gaditana|type=mRNA|length=1317bp
ATGGAATCACGCTATGCCGATCTTGCGATTGCAAGCAGTGAATACCCATT
CTGTGCCTGGGACGCGACCACGGATGAAAGCATCTACACGCCCCTACTTC
TCGACCCCAATGCAGTATATCAACCTCAGTTGTTATCTTTCGCAGCACAT
CCCCACAGGGTTTACAAGATCTCAGCTTCCTTCCCTCGAGTCGTGTACTT
CTCCTACGAAACCTACTCTTTGCGGGGTCATCCGCTAACCTCCCTCCCCG
ACCTTCGCATCGATCCTTCGTGGGGCAAGAACCCATACAGGGAGGAGACG
ACAGAAGAGGGGGCCGGGACGTACGAAATCTACGTGACAAGAGATGGGAA
CAAGGGTTGGCCAAACGAAGTGCGGGGTCTAAGTGAGGATCACACCAACG
CGACGCAGGCGGCTTTTTCCCGCGTAATGGACTTCGTGGACAATCTATCC
GTTGTAATGCTGCGTCTGTACACCACTGAGCAGCCTCCCAGCGTGTGGGG
AGGAGTGGATCGGCCTGTGATATCGTACACTGATGACTTGGGCCAGACCT
GGAAAGAACTGCAACCGTGCTCAGACACCACTCGCTACCAGTTCAACAGA
GCGATGAGACAAATCGGTTGGACCGTCTACGATTTCCGCTACCTGATTTA
TCATTCTCAATGGTATCGACTACGATCCTGTCACCTGCTGTCAAAGAGGG
AGGCGGATCATCCAGCTCTCTTTCCTGATGTTAATGTCCAGTTGGGTGGA
AACTTTGTTATGGTTATTGAAGGTACTGCGCCGCTGACAGCCACGGGCCT
TTTTGAGGGGCCTCGGCCTGTTTGGAATGTCACCAATTACAGCACCAGAT
ATTGGAGTTTCGCTGCCGCTGACGTCTTTGTTCCTGGTCCGACTTACTCA
AGCTTGACTGCCCAAGACATGGAGAATTTCTACGGAAAAGGATGGGATAG
AAGATATAAAATCGTGGGCGCGACGTCGATAGATATTGTCAAGGCCTGCG
GACTAGATGATCCCCATGCTCTATTTCTTCCTTACAAGAATGAGCTCATG
AACAACAACCCCCCAGCTGTCCCGGCAGTAATCGAAAGAGAAATGCTCGC
CCGTCACATGGCCATGGGCTTGCCTTCAGATAAACAGTCAATTGAATACG
TCACATCTAATTGCGGAAAGGAAAACAAATGTTTAAGCATCGATTTCATG
AAAGCATCCCTTGGAGATCAGTATCCCTCCCTGCAGGTTTATACGTGTGA
CGTGGCTACTGGAATCAAGACCCCTTTCGTCTATCAACCTTACAGAAGAG
ATTACATTCGCACATAG
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protein sequence of rna1200

>rna1200-protein ID=rna1200-protein|Name=rna1200|organism=Nannochloropsis gaditana|type=polypeptide|length=186bp
MAVLMGIITTVVMTVNDYSMQKTSIYDARSNVRGQEEIDESSPISSIVKK
QPISENFVSYECQSIDSSPKVGPAVVHSAISVSNTSLTEDESIIIAGERT
TDTSETSTIIALPIEQTSNSAENVSTSGSTDSNSKPSHVRHLRLVLPQTE
WKDSWIRPLTRLVEVLEDTINGFEQGWSEGEENRRG
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mRNA from alignment at CM002457.1:31815..33030+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1200 ID=rna1200|Name=rna1200|organism=Nannochloropsis gaditana|type=mRNA|length=1216bp|location=Sequence derived from alignment at CM002457.1:31815..33030+ (Nannochloropsis gaditana)
TCTGAAGAAGCGGCCTCCTCGCAAGATGGGCATAGTTACACTTTCACTTC
CCGCATTTATCAACCTTTACACGATGTTAAAGGCAcagatgggaggggag
attTGAGCTCTGCTTATAGTTCTGCAAGTGAAGAGGAAAACGATGAAATA
GTTTTTATTGTGGATGGATGTTCAGTAAAGCAGCACCAAGATGGCTCCGA
CAGGGCAACGCCCATCCACGAATCTTCAAAGGTCCAAATACCTAGCCTCG
AGGCGTCTACAAGTCATTCAACGCCATCACTGTCCCAAAACTATAGTTCT
CGAAATGccattctttttcttgcgtTGGCAATGGCAGTACTTATGGGCAT
TATTACTACTGTGGTAATGACAGTCAATGATTATAGCATGCAGAAGACAT
CTATCTACGATGCTCGTTCCAACGTTCGTGGTCAAGAAGAAATTGATGAA
AGCTCACCTATTTCATCAATAGTCAAGAAACAGCCAATATCAGAAAATTT
CGTGAGCTACGAATGTCAATCCATAGACTCATCTCCTAAAGTTGGACCCG
CAGTAGTCCACTCTGCCATATCTGTCTCAAACACGTCTTTAACAGAGGAT
GAATCAATAATCATAGCAGGTGAAAGGACGACAGATACCTCTGAGACTAG
TACGATCATAGCCTTACCCATTGAACAAACATCAAATTCTGCCGAAAATG
TGTCCACGAGTGGTAGCACTGATTCTAATTCGAAACCCTCGCACGTTCGT
CATTTAAGGCTGGTTCTCCCTCAAACAGAGTGGAAAGACTCGTGGATTAG
GCCGTTAACGCGCCTTGTGGAGGTTTTGGAAGATACAATAAATGGATTCG
AGCAAGGCTggagcgaaggggaggaaaatagaagaggatgaagccAAGGA
CCGAGGAGGCCCCGATGAAAAACGAAAATGAAACACGTGAAGTAGATAGT
GAAGACTGAGCTGTAACTGGTCCAAAAACTACCCCCAAAATTGAATCTCA
TTAAGTAAACGATCATCGTGACACGATCAATGAAGACAATTGGGACTTAA
TCATTCTCTATGCTATCATGAGAATTCATATAAACAGTAGGACATTTGCA
TCTTTAATACCATGAGCTGCAAAAGGCcattcctttctcttctgaATAGA
AAATTCTTTGTTCAATTATGTCAGAGTGCAAAAAACCTCAGAATCGTCTC
AAGGACAATGTAATGA
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Coding sequence (CDS) from alignment at CM002457.1:31815..33030+

>rna1200 ID=rna1200|Name=rna1200|organism=Nannochloropsis gaditana|type=CDS|length=561bp|location=Sequence derived from alignment at CM002457.1:31815..33030+ (Nannochloropsis gaditana)
ATGGCAGTACTTATGGGCATTATTACTACTGTGGTAATGACAGTCAATGA
TTATAGCATGCAGAAGACATCTATCTACGATGCTCGTTCCAACGTTCGTG
GTCAAGAAGAAATTGATGAAAGCTCACCTATTTCATCAATAGTCAAGAAA
CAGCCAATATCAGAAAATTTCGTGAGCTACGAATGTCAATCCATAGACTC
ATCTCCTAAAGTTGGACCCGCAGTAGTCCACTCTGCCATATCTGTCTCAA
ACACGTCTTTAACAGAGGATGAATCAATAATCATAGCAGGTGAAAGGACG
ACAGATACCTCTGAGACTAGTACGATCATAGCCTTACCCATTGAACAAAC
ATCAAATTCTGCCGAAAATGTGTCCACGAGTGGTAGCACTGATTCTAATT
CGAAACCCTCGCACGTTCGTCATTTAAGGCTGGTTCTCCCTCAAACAGAG
TGGAAAGACTCGTGGATTAGGCCGTTAACGCGCCTTGTGGAGGTTTTGGA
AGATACAATAAATGGATTCGAGCAAGGCTggagcgaaggggaggaaaata
gaagaggatga
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Synonyms
Publications