rna120, rna120 (mRNA) Nannochloropsis gaditana

Overview
Namerna120
Unique Namerna120
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2947
Alignment locationCM002455.1:317993..318540 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100033g46.8403.mrna
Orig protein idgnl|cribi|Naga_100033g46.8403
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:317993..318540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100033g46gene117Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna120rna120-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30564.1cds120Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna120 ID=rna120|Name=rna120|organism=Nannochloropsis gaditana|type=mRNA|length=2947bp
GTAAGGATTGTGAGCGCGACAACGGGAAGAATACAAGGGGAGGCAGGAAG
TCATGCCTACGAAATCGAGCCAGGATACTACTTGAAGCAACACGACTGCT
ATGCCCGTTCGGACAATTGACTATGTCACAGAGTGTCTGTCTGAGCCTAC
CAGCACTCGAGCTCTACGACAAACAAGACTTGCTCATTTTTTACAAGCTT
GTAGCGCATTAATTATTGAACAAATGCCAAGGAGCTAAGAAAATAGTGGA
AAATTGAGTCAAGGCTCCAGGCGCGTAAACCAGACGGAACAAGGAGAGAC
AACTCAACCGCAACAAGAGGAACGAGAGGAAAGGCAGTGTGGTGAACAAA
CATGCCTGCATTTGTACTACAAGAAGCATTACCAAAAAGGACAATTTGAC
CCTCAGATTCCCACTATCAACCGAACTATTCACAATGTACGTGCAGGACA
CGTCGAATATAGCAGGATCGGCGTCCGCAGATACCGCAGTCACGCATGTT
CCATCGGAACAGTAATCGGTTTGGTAGATTGCGCTCTTCCGGCAGTGCTG
CCGCAGCCGACACAGCCACGGAGGAGCATGAAATTGCTTCCGCCTCGGAA
AAAGTGACGATTTTGGTATGCGGTGCTGGTCCCGTGGGGCTGACGGCGAC
GCTTGAATGTGCACGGCACGGGCTGCAGGTCAAAATAATTGATAAATCCT
TGACGAAAGATCCCCACAGCAAAGCTTTTGGCATTCATGCATTGACGATG
GAGAAATTTCTTGCCATGGGTGTTGCTCCTGCCGTCCTGGAACAAGCCCA
TTGCGTCGACCGCCTGCGGATCCGAGGGGACTTTACGACCGTCGTGGAGG
ATTTTTGCCACATACCTTCTCGATTCAAGGGCGTCTTCATGCTGTCCCAA
CGAAAATTAGAGGACATTCTTGAGGCCCACATACACATGTATGGAATTGA
GGTGGAACGCGGCGTGGAGCTTCTCGATTTTGTCCAAGCAGAAGACCAAA
GTGATGCCTCAGGCACCCCCAGCGTCGGCAAAGGACCTATGACAGCCAAT
TTGCGGGACGTAAAGACGGGGGAGGAACGCAACCTCACGTGCAAGTACGT
GATAGGCTGCGATGGATGCCACAGCCGCGTCCGGAAGCTCCTCAAACTGC
CCTTCCTTGGCGCCCCCTATGAGGAAGATTTCCTCTTGCTCGACGTGCAT
TTCAGCGTGAAACCCGGCCAGCGGTTTCAGGGCTCCTCAGTGCTCTTAGG
GGACCCGGTGATCGCCTTATTTGAGCTGGACTGCGGCTTGTTGCGCTTCA
TATCCAAGCGCTGCGCCGGGGACGGTATCCCCGCCAGCCAGGATGACAAG
CGCATCGCCGACGTGGAAAACGCGGCCGTGGAAGCCGCCATCCTGAAGCG
CTTCCAAGACCTCGTCCTGAGCCGATGTCCTGAGCTCGCCGGCCTTCACG
ATGTAAAGTGGGCGAGCATATTCCGCATTCACCGTCGCGTGGTGCCGCAG
TATAATGTCGGGCACGTCTTCTTGGCGGGAGACGCGGCGCACATCCATTC
CCCCCTGGGCGGGCAGGGATTGAACACGGGTATACACGATGCGGTGAATT
TGGCCTGGAAATTGGGGGCGGTGGAACGTCTGGGTGCCGATCCGGGCATC
CTTCTTCCCTCCTACAACGCGGAACGACACCCAGTTGGAGAGCAAACCTT
GGCGTGGACGGATTCCTTGACCAGCTACACGATGACGCGGGGTTTCTTGT
CCGGGGTAGCCCAGAAAGTTCTCTTCCCTATTGCCAGCCCCCTCTTGAAC
CGCTCCACCTGGGCGATGAAGGCCATCACCTCCAGGATGAGCATGCTCAG
TCTCTCCTACCGAGGCACGCCCTCCCCCCTCCTCCCCTCCGCCGCCTTGC
CTGCGTCGAGCTTGCCCCCAATAGGGAGTCCCCAGCCTGGGGACCGGGTG
CCGGATGGACCTCTGGTCCGCTTTTCCTCCGGTGCGGCCACGGGTCTACT
CGAGGTTGTCTGTCGCGGCCTGGACCACACCCTTCTTATGTTCGGGGAGC
CGGAGGGGATGGAGGGCTTGGAAGGGGTCGAGGACGGGCTGACGGTGGAG
AAAGCCGTCAGATCGAAGCTGGATCCGGAGGTGGAAGCTTGGCGGCGGCT
GCGAGACATGGTCAGCTTTGTGCACATTTCCCGCCGCTTCAGAAGCGCTT
CCAAGTCCGTGACCAAGGTCGATGCCCGGGGTAGCTCAAGCCGATCCCAC
CCGAGATCCAGTGACCAGGGGTCAAACGGCGGTGCTCAGGTGCGCGAACG
CTCTGATCCTATAGACAAGAAGTCTTCGGGCGGTCGCCACCAGGTCCGCC
AGCCCGTTGCCCTCACCTCCATGTACGACGAGTCGGGACGCGTCAGCGAG
GCGTTTGGGCTGAACACCTCAGGACAGTCAGGGTCCCGCGGCAACCCCGC
CTGCCTTTTCCTTGTTCGCCCCGATGGCTACGTGGGCTGGCGGGCAGGGG
ATTGGGATCTGGGCGGGCTGCTCACGTACTTGGAGCCGCTGTACCCTAGG
GGACTATGTGACCTCTGAGGTTCACGAACTCAGATAATTGGATCGTGGAG
GCTGGTAAGGCACTATCTACATTTTGAACAAATGCGAGGACCTGATTTAA
AAAAGGAGAGGGAGGCCTCAGGCGTGGGTCGACATGAAAGGGAAATTGCA
GACATCTGGTAAAATACAAGCACCCGTAAATGGAAGGTACTCCAGACCGC
GGAACCGGGAAATGACACAAAAATAAATCGCAGCATTCGATGGCTTGTCT
GCAGCATCGTCTTATTTTTACACGACTCGTTACTCTTATATCGCTTTTGC
ACGGTCAGTGCTTGGCACCCCTGAAATTGCTTTTCAGGATGTAGAATCCT
TGCAGGCACAAGCTTCTTTTCAAGCAAAATAAATTCATCTTTCAACA
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protein sequence of rna120

>rna120-protein ID=rna120-protein|Name=rna120|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MRSFIHVLALGGSDRLMPVVKCVFTARLIVEDALTKEKGGTAGTLFQPER
IRVSFSKRTGRKGRRDPGEDIYNATRGGGYPLDRPYTEAACQGRVARGMR
VVAKVSLSPCMPRKETKSAEIRGRRMKNGRTRQIADAGPCLLDRIDREAT
DNGNNIGSEEDF
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mRNA from alignment at CM002455.1:317993..318540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna120 ID=rna120|Name=rna120|organism=Nannochloropsis gaditana|type=mRNA|length=548bp|location=Sequence derived from alignment at CM002455.1:317993..318540- (Nannochloropsis gaditana)
ATGCGTAGTTTTATACATGTGCTGGCGTTGGGCGGCTCGGATCGTCTGAT
GCCTGTGGTCAAATGCGTGTTCACTGCACGATTGATCGTGGAGGATGCGC
TCACGAAAGAAAAAGGCGGGACAGCAGGCACTTTGTTCCAGCCTGAAAGA
ATCCGCGTGTCGTTCTCCAAAAGGACAGGACGGAAAGGAAGGCGGGATCC
GGGAGAAGATATTTACAATGCAACCAGAGGTGGTGGATATCCTCTGGATC
GCCCATATACAGAGGCTGCATGTCAAGGACGTGTGGCGAGAGGCATGCGT
GTGGTTGCGAAGTCAGGAGACAGTAACTAGCTTATTGACAATACTCAACT
TAAGATAATCAGGCACCGAGGGTGTCTTTGAGCCCTTGTATGCCGAGAAA
AGAGACCAAATCCGCGGAAATTAGAGGAAGAAGAATGAAAAACGGAAGGA
CGAGGCAGATAGCCGACGCGGGCCCTTGTTTGCTGGACAGGATTGATCGT
GAAGCAACCGATAATGGAAACAACATTGGAAGCGAGGAAGACTTCTAA
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Coding sequence (CDS) from alignment at CM002455.1:317993..318540-

>rna120 ID=rna120|Name=rna120|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002455.1:317993..318540- (Nannochloropsis gaditana)
GGTGTCTTTGAGCCCTTGTATGCCGAGAAAAGAGACCAAATCCGCGGAAA
TTAGAGGAAGAAGAATGAAAAACGGAAGGACGAGGCAGATAGCCGACGCG
GGCCCTTGTTTGCTGGACAGGATTGATCGTGAAGCAACCGATAATGGAAA
CAACATTGGAAGCGAGGAAGACTTCTAAATGCGTAGTTTTATACATGTGC
TGGCGTTGGGCGGCTCGGATCGTCTGATGCCTGTGGTCAAATGCGTGTTC
ACTGCACGATTGATCGTGGAGGATGCGCTCACGAAAGAAAAAGGCGGGAC
AGCAGGCACTTTGTTCCAGCCTGAAAGAATCCGCGTGTCGTTCTCCAAAA
GGACAGGACGGAAAGGAAGGCGGGATCCGGGAGAAGATATTTACAATGCA
ACCAGAGGTGGTGGATATCCTCTGGATCGCCCATATACAGAGGCTGCATG
TCAAGGACGTGTGGCGAGAGGCATGCGTGTGGTTGCGAAGGTGTCTTTGA
GCCCTTGTATGCCGAGAAAAGAGACCAAATCCGCGGAAATTAGAGGAAGA
AGAATGAAAAACGGAAGGACGAGGCAGATAGCCGACGCGGGCCCTTGTTT
GCTGGACAGGATTGATCGTGAAGCAACCGATAATGGAAACAACATTGGAA
GCGAGGAAGACTTCTAAATGCGTAGTTTTATACATGTGCTGGCGTTGGGC
GGCTCGGATCGTCTGATGCCTGTGGTCAAATGCGTGTTCACTGCACGATT
GATCGTGGAGGATGCGCTCACGAAAGAAAAAGGCGGGACAGCAGGCACTT
TGTTCCAGCCTGAAAGAATCCGCGTGTCGTTCTCCAAAAGGACAGGACGG
AAAGGAAGGCGGGATCCGGGAGAAGATATTTACAATGCAACCAGAGGTGG
TGGATATCCTCTGGATCGCCCATATACAGAGGCTGCATGTCAAGGACGTG
TGGCGAGAGGCATGCGTGTGGTTGCGAA
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Synonyms
Publications