rna1186, rna1186 (mRNA) Nannochloropsis gaditana

Overview
Namerna1186
Unique Namerna1186
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length980
Alignment locationCM002456.1:1431506..1433257 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101322g2.365.mrna
Orig protein idgnl|cribi|Naga_101322g2.365
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1431506..1433257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101322g2gene1142Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1186rna1186-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29489.1cds1185Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1186 ID=rna1186|Name=rna1186|organism=Nannochloropsis gaditana|type=mRNA|length=980bp
AACCACCGCAGGATGATCAGAAATGCCTGTCTCGACCATCCACAAGCACT
ACCCACCCACATGCCCACGATTTTCCGCTGGCTTATGGAGGGCACCGGTT
AGAAATTCGCCCATGGTGCACATCAGCTTGAAAGTGGGATGATTTTACGT
TCATATGTCCTTTCCAGAGACCAGCTTGCATTTTGAATGAGGTTCCCCTC
CGAGGAAGACGCCGCCATTCCCTCCCTCACTGTTTTATCACTTTTCTTTC
CTTTGACGCCACCCCGTCTAGCTTAGGACAGGTGGGTGACACTGGCCAAG
AATACGCACAACTTTGAGCATGCCCGCGACACGGAATGGGGCTACGGGCA
GCCAAGTGACACGCCGGTCAAAGACACGTCACACTCCGGCCGATGGAACA
ACGCCTGCAGCGGATGAGGTACAGGAAATGCAGGACCCTCCCTCGGCGCC
CAAATCCCCCGTGCGAAGGGCCCGTGCGGGGGGAGGAAAAGGCCGGGGCG
CGCCGACGGTGGTGGAGGAGGGAGCAAGCCAGACAAAGGAAACGGCACCG
AACGATCCCGCGTCCCCTTCCAAGAAGACAAGGGCGAAGGGTGCTTCACG
CCAAGCGGCAAGAAACGGGGAGGCGGCGGAGATGGGACGGGGAGAGGAGG
ATGCTAGGCAGGCACCTCCGGAGGTGGAGGGACCAGTGGGGGGCTCGCCG
TCGCGGAAAAAACGGAGCGTGAAGGACATCAGCTTCCCGCCCACAGAAGA
AGAAGGCGACGACCGGGAGGAAGGGGGAGAAGGCGGGGCGGAGGGAGGGT
TGCCCTGGGCCGAATCGGAACAACGGCAGCAGAAACGGACAAAACACGCA
GCCGTTACTCGGGAGGAGGAAACGATCGCGGGGTTGAACACCGGTGTATT
CCCGGAAGTGATGGGGGCGGAGGAGTACCAGGCGCCCTTCCCCACGCGCG
AGGCAGTGTTGGAAGGCACCCCGGTGGAGG
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protein sequence of rna1186

>rna1186-protein ID=rna1186-protein|Name=rna1186|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MNTSLFLCLLLGLTAACPWTVPLPISLWGVFGTRPCWNRFCHKLASGGEI
LVKLSTAIRVCSDSNWLGGSGRDIFKCESDGYCCGHLTPSWRFPGPADQV
PSISITAFHHLPPLNMRRNLLHLGNCSYGRHDDTHQRG
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mRNA from alignment at CM002456.1:1431506..1433257+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1186 ID=rna1186|Name=rna1186|organism=Nannochloropsis gaditana|type=mRNA|length=1752bp|location=Sequence derived from alignment at CM002456.1:1431506..1433257+ (Nannochloropsis gaditana)
TGCACCATGGGCGAATTTCTAACCGGTGCCCTCCATAAGCCAGCGGAAAA
TCGTGGGCATGTGGGTGGGTAGTGCTTGTGGATGGTCGAGACAGGCATTT
CTGATCATCCTGCGGTGGTTAGGCAAAGAAAGCCTTTTTTATTCACACCA
CCCCTTACGCACTGCCGCTGTGGGACGGAGTTGCTACTCACTATACGTGA
AATGAGGAGCGGCACGAGCCCTGGTGATGCGGCGAAGGCGTGCTGGCGTT
GCGGCGTAAGCAGGCTCGATTGTGGTGTTTATCATGGGATTTGCGGCGGA
CAGGAGCGAAGATTtttgttcttcttcccttcggTGTTCCCAGCTGAAAG
CCATACGACGCCTGCAGGGACAGGAAGTCACGGGACCACGACGACACACG
TGTCACTGGCTTTGAGGTATATATATCTAGGAGGGGAGTACGGCGTCGTG
GATGCCAGCATTTGCTTGGCAGTAAAGCGGTGAGGAGTTGGGGCGCTTTG
GCTGCTCTGCAGGTGCatggagagaaggagcctGAGAGCTTGTGGTGGAT
AGCTATTCACATTAACAACAACCGCAAGCAACCACGTGGCACATTTTAAC
CGTCATTAAGGCATGCAAAAAGCGACCAGGGGTACCGTGGTCTTTGGAAG
CGAAGCCTTCATGTGAGGGCAAGCCCACGTCGGAAGTTTTGAGCGGGCCT
GACGTTCTTTATCTCTCCCGCCCATGTTATCCGATGAATACTTCCTTGTT
CCTGTGCTTGCTTTTGGGATTGACCGCGGCATGTCCCTGGACAGTGCCTC
TTCCCATATCCTTGTGGGGAGTTTTTGGGACACGGCCATGCTGGAACAGA
TTTTGTCATAAGCTTGCCAGCGGTGGCGAGATCCTTGTGAAGCTGTCGAC
CGCAATACGCGTGTGTTCTGATAGCAATTGGCTTGGCGGCAGTGGCCGAG
ACATTTTCAAATGTGAATCAGATGGCTATTGCTGTGGGCACTTGACTCCT
TCTTGGCGGTTTCCTGGCCCTGCTGACCAAGTTCCTTCTATATCCATCAC
GGCattccaccaccttccccctctaaACATGCGCAGAAAccttcttcatc
ttggcAATTGTAGTTATGGCAGACACGACGACACCCACCAACGAGGATGA
GCTGGTCGACTACGACGAGGAGaacgagcaggaggagaaggtggggaagg
ggctGATGGGGCaagacgatgaggatggaggggagccGGCGCGCCCGGAG
GCCCCAGCTTTGTTGCTCAACGATCCAATTAAAAAACGATAGGgagccga
ggcggggggagatgaaggaCGCAAAGGTCACTACGTGGGGGTGCATGCGT
CGGGATTCAAGGATTTTCTTTTGAAGGCGGAATTGCTCAGGGCGCTGGTC
GACTGCGGCTTTGAACATCCCTCGGAAggtgggatgggaggaagggaggg
aggaagagggaggagggagggaaggagggagaggtggattAAGAAAAAGt
gatagggagggagggaggggggaggaggaacaggattGCAGGTGGGGGGG
TATTCATTAGGATTCCTTTCGGACGAGGACTCACTCCGACTTCTCTCCCC
GtcccacctcccttttctcctccctcagtgCAACATGAGTGCATTCCGCA
GGCCATATTGGGCATGGATATTGTCTGTCAGGCCAAGTCCGGCATGGGGA
AGACGGCGGTCTTCGTCCTCTCTACCCTCCACTTGCTGGAGCCCAAGGTA
AG
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Coding sequence (CDS) from alignment at CM002456.1:1431506..1433257+

>rna1186 ID=rna1186|Name=rna1186|organism=Nannochloropsis gaditana|type=CDS|length=417bp|location=Sequence derived from alignment at CM002456.1:1431506..1433257+ (Nannochloropsis gaditana)
ATGAATACTTCCTTGTTCCTGTGCTTGCTTTTGGGATTGACCGCGGCATG
TCCCTGGACAGTGCCTCTTCCCATATCCTTGTGGGGAGTTTTTGGGACAC
GGCCATGCTGGAACAGATTTTGTCATAAGCTTGCCAGCGGTGGCGAGATC
CTTGTGAAGCTGTCGACCGCAATACGCGTGTGTTCTGATAGCAATTGGCT
TGGCGGCAGTGGCCGAGACATTTTCAAATGTGAATCAGATGGCTATTGCT
GTGGGCACTTGACTCCTTCTTGGCGGTTTCCTGGCCCTGCTGACCAAGTT
CCTTCTATATCCATCACGGCattccaccaccttccccctctaaACATGCG
CAGAAAccttcttcatcttggcAATTGTAGTTATGGCAGACACGACGACA
CCCACCAACGAGGATGA
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Synonyms
Publications