rna1178, rna1178 (mRNA) Nannochloropsis gaditana

Overview
Namerna1178
Unique Namerna1178
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length561
Alignment locationCM002456.1:1405190..1405468 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100287g5.6254.mrna
Orig protein idgnl|cribi|Naga_100287g5.6254
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1405190..1405468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100287g5gene1134Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29498.1cds1177Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1178rna1178-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1178 ID=rna1178|Name=rna1178|organism=Nannochloropsis gaditana|type=mRNA|length=561bp
ATGAAGAAAAGGAGTCTCAAGACTCCATCCCCGTGGTCTTTAACTCACCA
TTTCCTCACTCTTTTCCCTCCATTGTCGCCCCTCGGACAGCCGCAGGAAC
CCTTTCAAATCCCAGCCTCTCCGTCTTCCTCCAGCCAGCGACATGGGCTT
GTCTCCATTGAAAATGCCCAAACCCATGAAACTGTGAGACAAGAGGTGGT
GGACAATGAGGAAGCAGGGACTGATGTATTTCAAGGCTGGGTACTTGGGA
GGGAGAGCGTGTTGGTTGTGATTATAGCGGTGAGCGGAGAGGGAAGGAAG
GTTATGCGTGAAGGAGAGGCACCTGTCAAGGACGACGTAGGTAAGGAGGA
GAATTTGGGGCTTGTACGCACCCGGTCGACAGCTCGCACGCAGGCGACAC
TAACGTCGACAAGCGGGGGGGGAAGGAAATCAGAGCAAGGAGGAGCAGAG
GTAAGAAGCCGGGTAGGTTGTAAAATGAATGCAAAGCAAAGATGGAGAGG
GAGCGTGAAGCCGAAGCAGCGGTATGTGGCATGTAAGGAGGGTCATTTAC
AAGGTGTATAA
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protein sequence of rna1178

>rna1178-protein ID=rna1178-protein|Name=rna1178|organism=Nannochloropsis gaditana|type=polypeptide|length=92bp
MPGFFHRRHADLNSSQRKPIRCFPDDLNCKFLFLPVPPPSRIALHSCKGT
VWTMQSDSRQVVQVRGIHGGRRVGVAKLTVDALFRQVSLFGI
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mRNA from alignment at CM002456.1:1405190..1405468-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1178 ID=rna1178|Name=rna1178|organism=Nannochloropsis gaditana|type=mRNA|length=279bp|location=Sequence derived from alignment at CM002456.1:1405190..1405468- (Nannochloropsis gaditana)
ATGCCTGGATTTTTCCATCGACGACATGCTGACCTGAACTCAAGTCAAAG
GAAACCGATCCGTTGCTTTCCAGATGATCTCAACTGTAAATTTCTTTTTC
TACCCGTCCCACCACCATCACGCATTGCGTTGCACAGTTGTAAAGGCACG
GTTTGGACCATGCAGTCGGACAGCCGCCAAGTTGTGCAGGTGCGTGGAAT
ACATGGAGGACGACGTGTGGGAGTCGCGAAGTTGACTGTAGATGCACTTT
TCCGCCAAGTTTCCTTGTTCGGAATCTGA
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Coding sequence (CDS) from alignment at CM002456.1:1405190..1405468-

>rna1178 ID=rna1178|Name=rna1178|organism=Nannochloropsis gaditana|type=CDS|length=279bp|location=Sequence derived from alignment at CM002456.1:1405190..1405468- (Nannochloropsis gaditana)
ATGCCTGGATTTTTCCATCGACGACATGCTGACCTGAACTCAAGTCAAAG
GAAACCGATCCGTTGCTTTCCAGATGATCTCAACTGTAAATTTCTTTTTC
TACCCGTCCCACCACCATCACGCATTGCGTTGCACAGTTGTAAAGGCACG
GTTTGGACCATGCAGTCGGACAGCCGCCAAGTTGTGCAGGTGCGTGGAAT
ACATGGAGGACGACGTGTGGGAGTCGCGAAGTTGACTGTAGATGCACTTT
TCCGCCAAGTTTCCTTGTTCGGAATCTGA
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Synonyms
Publications