rna1177, rna1177 (mRNA) Nannochloropsis gaditana

Overview
Namerna1177
Unique Namerna1177
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length225
Alignment locationCM002456.1:1404251..1404945 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100287g6.6255.mrna
Orig protein idgnl|cribi|Naga_100287g6.6255
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1404251..1404945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100287g6gene1133Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1177rna1177-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29499.1cds1176Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1177 ID=rna1177|Name=rna1177|organism=Nannochloropsis gaditana|type=mRNA|length=225bp
ATGAAAGTAGACGAATTGATAAACTGTCGAATTCCTTCAACTGACAGAAG
CGGCCACCTCAACGTGGAATACGCCGGAACCCGTCCGCTCTCCGAAGCTA
AGCGCGTTCGAGTCCCAATAGTACTGCCGTGGGTGACCAGGCTGGAAGGT
GGGATGTCGCTTCTTTTTAACTTTTATTTGTGGGGAGAGAATAGATTTTG
GCGCAGAGTGACTTCTTTGATTTAA
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protein sequence of rna1177

>rna1177-protein ID=rna1177-protein|Name=rna1177|organism=Nannochloropsis gaditana|type=polypeptide|length=186bp
MKKRSLKTPSPWSLTHHFLTLFPPLSPLGQPQEPFQIPASPSSSSQRHGL
VSIENAQTHETVRQEVVDNEEAGTDVFQGWVLGRESVLVVIIAVSGEGRK
VMREGEAPVKDDVGKEENLGLVRTRSTARTQATLTSTSGGGRKSEQGGAE
VRSRVGCKMNAKQRWRGSVKPKQRYVACKEGHLQGV
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mRNA from alignment at CM002456.1:1404251..1404945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1177 ID=rna1177|Name=rna1177|organism=Nannochloropsis gaditana|type=mRNA|length=695bp|location=Sequence derived from alignment at CM002456.1:1404251..1404945- (Nannochloropsis gaditana)
ATGAAGAAAAGGAGTCTCAAGACTCCATCCCCGTGGTCTTTAACTCACCA
TTTCCTCACTCTTTTCCCTCCATTGTCGCCCCTCGGACAGCCGCAGGAAC
CCTTTCAAATCCCAGCCTCTCCGTCTTCCTCCAGCCAGCGACATGGTCAA
CAGACATCGCCCTCTCTCCCTTCCACCAACACCAAGGACAACTCCCCATC
CCGCACCTCCCCCTTTAAACAGGGCTTGTCTCCATTGAAAATGCCCAAAC
CCATGAAACTGTGAGACAAGAGGTGGTGGACAATGAGGAAGCAGGGACTG
ATGTATTTCAAGGCTGGGTACTTGGGAGGGAGAGCGTGTTGGTTGTGATT
ATAGCGGTGAGCGGAGAGGGAAGGAAGGTTATGCGTGAAGGAGAGGCACC
TGTCAAGGACGACGTAGGTAAGGAGGAGAATTTGGGGCTTGTACGCACCC
GGTCGACAGCTCGCACGCAGGCGACACTAACGTCGACAAGCGGGGGGTAA
TGGGAATATAAAACTTCGACGAAGTTGACCATTGGCTGTGGGGGAAGCTT
TAGGGGAAGGAAATCAGAGCAAGGAGGAGCAGAGGTAAGAAGCCGGGTAG
GTTGTAAAATGAATGCAAAGCAAAGATGGAGAGGGAGCGTGAAGCCGAAG
CAGCGGTATGTGGCATGTAAGGAGGGTCATTTACAAGGTGTATAA
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Coding sequence (CDS) from alignment at CM002456.1:1404251..1404945-

>rna1177 ID=rna1177|Name=rna1177|organism=Nannochloropsis gaditana|type=CDS|length=1683bp|location=Sequence derived from alignment at CM002456.1:1404251..1404945- (Nannochloropsis gaditana)
GGGAAGGAAATCAGAGCAAGGAGGAGCAGAGGTAAGAAGCCGGGTAGGTT
GTAAAATGAATGCAAAGCAAAGATGGAGAGGGAGCGTGAAGCCGAAGCAG
CGGTATGTGGCATGTAAGGAGGGTCATTTACAAGGTGTATAAGGCTTGTC
TCCATTGAAAATGCCCAAACCCATGAAACTGTGAGACAAGAGGTGGTGGA
CAATGAGGAAGCAGGGACTGATGTATTTCAAGGCTGGGTACTTGGGAGGG
AGAGCGTGTTGGTTGTGATTATAGCGGTGAGCGGAGAGGGAAGGAAGGTT
ATGCGTGAAGGAGAGGCACCTGTCAAGGACGACGTAGGTAAGGAGGAGAA
TTTGGGGCTTGTACGCACCCGGTCGACAGCTCGCACGCAGGCGACACTAA
CGTCGACAAGCGGGGGATGAAGAAAAGGAGTCTCAAGACTCCATCCCCGT
GGTCTTTAACTCACCATTTCCTCACTCTTTTCCCTCCATTGTCGCCCCTC
GGACAGCCGCAGGAACCCTTTCAAATCCCAGCCTCTCCGTCTTCCTCCAG
CCAGCGACATGGGGAAGGAAATCAGAGCAAGGAGGAGCAGAGGTAAGAAG
CCGGGTAGGTTGTAAAATGAATGCAAAGCAAAGATGGAGAGGGAGCGTGA
AGCCGAAGCAGCGGTATGTGGCATGTAAGGAGGGTCATTTACAAGGTGTA
TAAGGCTTGTCTCCATTGAAAATGCCCAAACCCATGAAACTGTGAGACAA
GAGGTGGTGGACAATGAGGAAGCAGGGACTGATGTATTTCAAGGCTGGGT
ACTTGGGAGGGAGAGCGTGTTGGTTGTGATTATAGCGGTGAGCGGAGAGG
GAAGGAAGGTTATGCGTGAAGGAGAGGCACCTGTCAAGGACGACGTAGGT
AAGGAGGAGAATTTGGGGCTTGTACGCACCCGGTCGACAGCTCGCACGCA
GGCGACACTAACGTCGACAAGCGGGGGATGAAGAAAAGGAGTCTCAAGAC
TCCATCCCCGTGGTCTTTAACTCACCATTTCCTCACTCTTTTCCCTCCAT
TGTCGCCCCTCGGACAGCCGCAGGAACCCTTTCAAATCCCAGCCTCTCCG
TCTTCCTCCAGCCAGCGACATGGGGAAGGAAATCAGAGCAAGGAGGAGCA
GAGGTAAGAAGCCGGGTAGGTTGTAAAATGAATGCAAAGCAAAGATGGAG
AGGGAGCGTGAAGCCGAAGCAGCGGTATGTGGCATGTAAGGAGGGTCATT
TACAAGGTGTATAAGGCTTGTCTCCATTGAAAATGCCCAAACCCATGAAA
CTGTGAGACAAGAGGTGGTGGACAATGAGGAAGCAGGGACTGATGTATTT
CAAGGCTGGGTACTTGGGAGGGAGAGCGTGTTGGTTGTGATTATAGCGGT
GAGCGGAGAGGGAAGGAAGGTTATGCGTGAAGGAGAGGCACCTGTCAAGG
ACGACGTAGGTAAGGAGGAGAATTTGGGGCTTGTACGCACCCGGTCGACA
GCTCGCACGCAGGCGACACTAACGTCGACAAGCGGGGGATGAAGAAAAGG
AGTCTCAAGACTCCATCCCCGTGGTCTTTAACTCACCATTTCCTCACTCT
TTTCCCTCCATTGTCGCCCCTCGGACAGCCGCAGGAACCCTTTCAAATCC
CAGCCTCTCCGTCTTCCTCCAGCCAGCGACATG
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Synonyms
Publications