rna1176, rna1176 (mRNA) Nannochloropsis gaditana

Overview
Namerna1176
Unique Namerna1176
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1196
Alignment locationCM002456.1:1403219..1403693 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100287g7.6257.mrna
Orig protein idgnl|cribi|Naga_100287g7.6257
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1403219..1403693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100287g7gene1132Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1176rna1176-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29501.1cds1175Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1176 ID=rna1176|Name=rna1176|organism=Nannochloropsis gaditana|type=mRNA|length=1196bp
GATGCAAGCCGGACACAAAATCAGCCACACGGCGTAGAACAAAGTGGGGG
AAGTTTCCTATTTGGGGTAAATAATACGTAGACATGCGTATTTCAAGCCA
TATTTTTGTTGCAATGCGTCGCTATTCTCCCGCTTATTACCTCTCACATG
GGCAGCTTTTTGTACTCGGAAGCATTTGCAGAGGAAAGCACGGTCATCAA
GGACGCACCGCAAAGATGGATATGGATATGCCCGGCATGGATATGGACAT
GCCCGGGATGGACATGGGGGGAATGGGGGATAGCGGGGGCTTTTGCCAGG
GGGAGGGAAGCGTTATGAACAACGGCTTCGTTTTCATGCCGCAGGACGGG
TACTGCATCCTCTATCTATTCCAAGGGGCCGTGGTGAACACGGCGGGCAA
ATACGCCGGGGCCCTCATCGGCACTTTTTTCTTGGCTTTTTCTGTCGAGG
CCTTGCGTCACTTTCGTCTGTGGATGAGGTTGCGCCGCGCCACCGTCGTT
CTCGCGCACGGAGAAAAGGAAGGAGAGGTCGTGACCGGGCCTCCCCTCCG
GGCTCAAGTGCTGCCTATTTTCTTAGAAGCGCTTCTTTTCGGCGTGCACA
TGTTCGTGGCCTACCTCATCATGTTGTTGGTCATGCTGTATGAATGGGCC
ATTTTCATCTCCCTCCTGCTGGGCCTGGCCGCCGGGTATTTTACTTTTGA
AATGTGGGAGGCCTATAGGGTCGCGAATAAGAAGCAACTTCCAAGTGCCA
TTGGGGCTATTGGTGGGGGTTGTGGCTGTGTGGACGAAGTGATTCACGTG
GCTGCCGAATCGACAATTCACCCTGGACATGGAGGGCAGCGAAATGGAAA
TGGCACCCAAAATTCTGGGGATAAGGTTTAAATGAACATACAAGGAAAGT
GAGGGAACCAAGATTGAAGGTGCAGCAGGGCTATGCGCAAAGTGAGAGCA
GTCATTGCAAGTTCCTGTACGACTTGTCAAGTGATAGACAAGAGAATGTT
GCCAGGTGATAGACAAGAGAATGTTGGAGGATGGGCGTTAATGGACTTGA
TTGTGTTTAGTCGTACGTGGTGCGTGCGAGGCCACTTTTTTGAGTAAGAA
AGCAACGAGAAGCTGCTCAATTCCTGCCAAGCCAGGAACCGCGGACATTC
TCAATCTAAATAAAATGAAATGACCATAGGGCATGATGCGCTCATT
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protein sequence of rna1176

>rna1176-protein ID=rna1176-protein|Name=rna1176|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MKVDELINCRIPSTDRSGHLNVEYAGTRPLSEAKRVRVPIVLPWVTRLEG
GMSLLFNFYLWGENRFWRRVTSLI
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mRNA from alignment at CM002456.1:1403219..1403693-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1176 ID=rna1176|Name=rna1176|organism=Nannochloropsis gaditana|type=mRNA|length=475bp|location=Sequence derived from alignment at CM002456.1:1403219..1403693- (Nannochloropsis gaditana)
ATGAAAGGTCGGTTAAAATGCCAATTTTCCATTTCTACCTTTCTCATCCT
GAATTTTTTACCCTTTTCAGAGATACGCCTTATTGTATTTCGAGGAAAAA
ACGCGATAACACTTAAGCATCAAAGGAACCAAGCCCTGAAAAAAGGGTTG
TGTCTACCTCTGTCTGCTAAATCCGGGGCCTTAATTTGAACGATTGCCTC
CAATATACTCCTTTTAGCCTTCTGACATCTTGCTTTCAGTGAAGACATAG
AATGCAGTAGACGAATTGATAAACTGTCGAATTCCTTCAACTGACAGAAG
CGGCCACCTCAACGTGGAATACGCCGGAACCCGTCCGCTCTCCGAAGCTA
AGCGCGTTCGAGTCCCAATAGTACTGCCGTGGGTGACCAGGCTGGAAGGT
GGGATGTCGCTTCTTTTTAACTTTTATTTGTGGGGAGAGAATAGATTTTG
GCGCAGAGTGACTTCTTTGATTTAA
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Coding sequence (CDS) from alignment at CM002456.1:1403219..1403693-

>rna1176 ID=rna1176|Name=rna1176|organism=Nannochloropsis gaditana|type=CDS|length=450bp|location=Sequence derived from alignment at CM002456.1:1403219..1403693- (Nannochloropsis gaditana)
TAGACGAATTGATAAACTGTCGAATTCCTTCAACTGACAGAAGCGGCCAC
CTCAACGTGGAATACGCCGGAACCCGTCCGCTCTCCGAAGCTAAGCGCGT
TCGAGTCCCAATAGTACTGCCGTGGGTGACCAGGCTGGAAGGTGGGATGT
CGCTTCTTTTTAACTTTTATTTGTGGGGAGAGAATAGATTTTGGCGCAGA
GTGACTTCTTTGATTTAAATGAAAGTAGACGAATTGATAAACTGTCGAAT
TCCTTCAACTGACAGAAGCGGCCACCTCAACGTGGAATACGCCGGAACCC
GTCCGCTCTCCGAAGCTAAGCGCGTTCGAGTCCCAATAGTACTGCCGTGG
GTGACCAGGCTGGAAGGTGGGATGTCGCTTCTTTTTAACTTTTATTTGTG
GGGAGAGAATAGATTTTGGCGCAGAGTGACTTCTTTGATTTAAATGAAAG
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Synonyms
Publications