rna1167, rna1167 (mRNA) Nannochloropsis gaditana

Overview
Namerna1167
Unique Namerna1167
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1037
Alignment locationCM002456.1:1379185..1380168 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100744g2.3820.mrna
Orig protein idgnl|cribi|Naga_100744g2.3820
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1379185..1380168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100744g2gene1124Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29506.1cds1166Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1167rna1167-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1167 ID=rna1167|Name=rna1167|organism=Nannochloropsis gaditana|type=mRNA|length=1037bp
CCCTCCCTCCTCTCTCAAATCCCTCCCTATCTTCTTCTCTCTCTCCCTTC
CCTGCTTCCTTCCCTGCCTCTTTCTCTCTCTTCGCTGGCCGTTCAGAATT
GTTCGAAGCTCCTCTCGTCCATCCCTCCCCCCCTTCCTCCATCCCTCCAT
CTCTTTCTCTCTTGCCTCCTTCCTCTTGTCCTTCTTCCCATCCTCCCTCC
CTCCCTCTTTTGCTTCCCTCCCTCCCTTGTCGCTTGCCGTCTTTCCGCCC
ACGCCCAGATTCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGC
GATCCCTCCTCCGGCGGCATCAGCATCGTCCACCTAGGGCCTGAACAGTC
CATCCGCCTGACCGCCATCGCCAAGAAAGGGATCGGGAAGGAACATGCCA
AGTGGTCTCCCTGCGCGGTAGCCACCTATACGAACGATCCCGTCATCACC
CTGAACAAGGAGGAGCACGGTAAGCTCAGCCTGGCGCAGAAGAAGCAGTT
GATCGATTGTTGCCCAACTAAGGTCTTCCGTTTGGACGAACGGGAAAACG
TGACGGTGGCGCGTCCGGGGAAATGCATCTATTGCCAAGAATGCCAGGCA
CTGGCCAAGACCTTGAAAAGCGACCCGGATGATGACCCCGTGGTCCAGGT
CACGGCGAACGAGGAGCGCTTTGTCTTTGCGGTGGAGACGACGGGGGCCT
TGACGGCCGGGGAGGTGGTGGAGCACGCGTTGGAGATTGTGCTGAGCAAG
ATCACCGAGGTGCAGACTCAGCTTGTGCACATTGCGCGGACGGGGGTGGT
GTAAAGCGGGAAGGGGGGAGGGCGGGAGGGAGGGCAGGGGGGAGGGCGGG
AGGGAAGCGGCCCCGAGGGCCAGCACGAATCCCGGTGCGTGTCCACAGGC
AGCTGTCGGGCGAGTGGCTAAGAGGCTTCCCTCCTTCGATGCTTCTCCCC
AGAGTTTCCAACGCGCGCAAAAGGAGAGAAGGAATCGGTCACGTGGCAGC
TGCCCAATGCCTTGGTGGCTTCATGTCAACGGTCTTC
back to top

protein sequence of rna1167

>rna1167-protein ID=rna1167-protein|Name=rna1167|organism=Nannochloropsis gaditana|type=polypeptide|length=287bp
MLKGLRNLWSPSPPGEASLGSNGCGVRGGVTPSSGQRGSRKGSLPRAAAA
AALLAFSASPRARASRRVTRHEQRGRSHNRKRSSNVTVSRKAQKEKQKKK
RRRKSSSPSPTEEKGVETTRPDSNAPTAFLGKAEQAARNSGVVTLADYEM
GCKRQRRTRPLDLDRPMPVIVAGRRDEQSTIQELLSLPGLPHVEAPESVR
NVECFQEVLDRAPQETAFLPGPGMVLTDLKLTAAETEMAAAMKEAEVTTP
HFAEVEGEGKRPRAAAGEGGGEGGGRAGESTGGRRRW
back to top

mRNA from alignment at CM002456.1:1379185..1380168-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1167 ID=rna1167|Name=rna1167|organism=Nannochloropsis gaditana|type=mRNA|length=984bp|location=Sequence derived from alignment at CM002456.1:1379185..1380168- (Nannochloropsis gaditana)
GCGCGTGTACAGCTTGGCAGTGGCTGCCGCGACCGTCTTCCCGCCCGTGC
CACAGCAGCCTCGAGGCGCTCGACTCTTTGCTTGACCACCCTTGCTGAAC
GAGCAATCAGTCATTTGTAAATGTTGAAAGGGCTCCGCAACTTGTGGAGC
CCCAGTCCCCCCGGTGAGGCGAGCCTTGGTAGCAACGGTTGTGGTGTGAG
AGGGGGGGTCACGCCTAGCAGCGGACAAAGAGGAAGCCGAAAAGGATCTC
TACCGCGAGCTGCGGCAGCGGCAGCATTGCTTGCGTTTTCAGCCTCCCCC
CGAGCTCGTGCCAGCAGGAGGGTGACGCGACATGAGCAACGCGGGCGCAG
CCACAACAGGAAAAGAAGCAGCAACGTAACCGTCAGCCGCAAGGCCCAGA
AGGAGAAGCAGAAGAAGAAACGCCGACGAAAGAGCTCCTCCCCGTCACCC
ACAGAAGAGAAAGGGGTGGAAACGACCCGGCCCGACAGCAATGCACCCAC
CGCATTTCTAGGCAAAGCCGAGCAAGCTGCCCGAAACTCGGGCGTGGTGA
CCCTCGCGGACTATGAGATGGGCTGCAAACGACAACGACGGACACGACCT
TTGGACTTAGACCGGCCCATGCCCGTGATTGTGGCGGGGCGAAGGGACGA
GCAAAGCACCATCCAGGAGCTGCTGAGCCTGCCGGGGCTGCCCCACGTGG
AGGCGCCGGAAAGTGTGAGGAATGTGGAGTGCTTCCAGGAGGTCCTGGAC
CGGGCGCCTCAAGAGACGGCATTTCTGCCCGGGCCGGGTATGGTATTGAC
GGATTTGAAGCTGACGGCTGCAGAAACGGAGATGGCGGCGGCGATGAAGG
AGGCGGAGGTGACCACGCCACATTTTGCGGAGGTGGAAGGGGAAGGGAAG
CGACCGCGGGCGGCAGCGGGGGAGGGCGGGGGGGAGGGCGGGGGGAGGGC
GGGGGAAAGTACCGGCGGCCGGCGGCGTTGGTGA
back to top

Coding sequence (CDS) from alignment at CM002456.1:1379185..1380168-

>rna1167 ID=rna1167|Name=rna1167|organism=Nannochloropsis gaditana|type=CDS|length=864bp|location=Sequence derived from alignment at CM002456.1:1379185..1380168- (Nannochloropsis gaditana)
ATGTTGAAAGGGCTCCGCAACTTGTGGAGCCCCAGTCCCCCCGGTGAGGC
GAGCCTTGGTAGCAACGGTTGTGGTGTGAGAGGGGGGGTCACGCCTAGCA
GCGGACAAAGAGGAAGCCGAAAAGGATCTCTACCGCGAGCTGCGGCAGCG
GCAGCATTGCTTGCGTTTTCAGCCTCCCCCCGAGCTCGTGCCAGCAGGAG
GGTGACGCGACATGAGCAACGCGGGCGCAGCCACAACAGGAAAAGAAGCA
GCAACGTAACCGTCAGCCGCAAGGCCCAGAAGGAGAAGCAGAAGAAGAAA
CGCCGACGAAAGAGCTCCTCCCCGTCACCCACAGAAGAGAAAGGGGTGGA
AACGACCCGGCCCGACAGCAATGCACCCACCGCATTTCTAGGCAAAGCCG
AGCAAGCTGCCCGAAACTCGGGCGTGGTGACCCTCGCGGACTATGAGATG
GGCTGCAAACGACAACGACGGACACGACCTTTGGACTTAGACCGGCCCAT
GCCCGTGATTGTGGCGGGGCGAAGGGACGAGCAAAGCACCATCCAGGAGC
TGCTGAGCCTGCCGGGGCTGCCCCACGTGGAGGCGCCGGAAAGTGTGAGG
AATGTGGAGTGCTTCCAGGAGGTCCTGGACCGGGCGCCTCAAGAGACGGC
ATTTCTGCCCGGGCCGGGTATGGTATTGACGGATTTGAAGCTGACGGCTG
CAGAAACGGAGATGGCGGCGGCGATGAAGGAGGCGGAGGTGACCACGCCA
CATTTTGCGGAGGTGGAAGGGGAAGGGAAGCGACCGCGGGCGGCAGCGGG
GGAGGGCGGGGGGGAGGGCGGGGGGAGGGCGGGGGAAAGTACCGGCGGCC
GGCGGCGTTGGTGA
back to top
Synonyms
Publications