rna1148, rna1148 (mRNA) Nannochloropsis gaditana

Overview
Namerna1148
Unique Namerna1148
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length381
Alignment locationCM002456.1:1308929..1309618 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g19.8661.mrna
Orig protein idgnl|cribi|Naga_100006g19.8661
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1308929..1309618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g19gene1106Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1148rna1148-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29572.1cds1147Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1148 ID=rna1148|Name=rna1148|organism=Nannochloropsis gaditana|type=mRNA|length=381bp
ATGCGCTTTTCTCGTAATCTAAAAGATACTGGCAATCCCATCGACATTCT
TGCCACACAAGATCGATGTCATGCAAAGAATCCAATCCGAAGGCGACCAC
CTAGGCTTCCGGAAGGGATCGGCCAAGCAGCATTTGGACATGAAGTAACC
CGATTTTGTTCCACCACACATGCCGCATCGTTGCTTTTGCATGAATTGAC
TTTCAATATATTGGGGGAACCCTTTTGCAGCTCACGAGAGACGTTTTACA
TGATAAGTGGTAATATGCAAGTCACCCTTGAGTCTTCAGGGCCAGAAATG
GTTTCTTGTGTAAAAAGGATGGCAAGAAACCTTAAGGAAGCTGGACGAAG
AGACCGTGGGGTCAATCGAAATGATTTATAG
back to top

protein sequence of rna1148

>rna1148-protein ID=rna1148-protein|Name=rna1148|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MCHVFQHASSRVGLLEAPCQTWGRSSPLLGVPRNTLILRNVWESMIETFD
SAKSLWICSRNVAMSNGLKKPMQANATLWKEANQLLRYHALLLSLIHHCG
TRQRYVGTTPWVTILIRGSIVKGM
back to top

mRNA from alignment at CM002456.1:1308929..1309618-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1148 ID=rna1148|Name=rna1148|organism=Nannochloropsis gaditana|type=mRNA|length=690bp|location=Sequence derived from alignment at CM002456.1:1308929..1309618- (Nannochloropsis gaditana)
ATGTGTCATGTGTTTCAGCACGCATCCTCGCGAGTAGGGCTGCTGGAGGC
CCCATGTCAGACGTGGGGGAGATCATCGCCTCTTCTGGGTGTGCCAAGGT
GAGTACGTGGCCATGGTCACACGCCGTGTACTCCTGTGCTTGGCTAGAAC
GCCAAGGCTGTAGGTAGAGTGGGCTCGTCGCACGGGAGCTGTAAGGAGAA
CTCATTTTGCTACGCCCTCAGCGGACGGATCTGTACGTTGGAAATTCCCA
TGCGCGCATGACTCATGTTCATGATTATATATTTGAGCCTTCAGGCTGAT
TTGTCGAGATACCCTTCATTCATGCGTGCGTAGTTTTTAATAAATTCAAT
GGATCACATCACATACGTAGGAATACTTTAATCTTGAGGAATGTTTGGGA
GAGCATGATCGAGACTTTCGACAGTGCAAAAAGTCTATGGATATGCTCAA
GAAATGTAGCGATGAGCAACGGCTTAAAAAAGCCAATGCAAGCAAATGCA
ACCCTGTGGAAAGAAGCCAATCAGTTATTGAGATACCACGCCCTCCTGTG
AAGTGAAATGAATTCTTCTCGCGTAGTGGGAGACCCACAGCCTGTCACTT
ATCCATCACTGCGGCACTCGCCAGAGATATGTTGGGACGACACCATGGGT
AACCATCTTGATCCGAGGCAGCATCGTGAAAGGCATGTGA
back to top

Coding sequence (CDS) from alignment at CM002456.1:1308929..1309618-

>rna1148 ID=rna1148|Name=rna1148|organism=Nannochloropsis gaditana|type=CDS|length=1125bp|location=Sequence derived from alignment at CM002456.1:1308929..1309618- (Nannochloropsis gaditana)
CCTGTCACTTATCCATCACTGCGGCACTCGCCAGAGATATGTTGGGACGA
CACCATGGGTAACCATCTTGATCCGAGGCAGCATCGTGAAAGGCATGTGA
GAATACTTTAATCTTGAGGAATGTTTGGGAGAGCATGATCGAGACTTTCG
ACAGTGCAAAAAGTCTATGGATATGCTCAAGAAATGTAGCGATGAGCAAC
GGCTTAAAAAAGCCAATGCAAGCAAATGCAACCCTGTGGAAAGAAGCCAA
TCAGTTATTGAGATACCACGCCCTCCTATGTGTCATGTGTTTCAGCACGC
ATCCTCGCGAGTAGGGCTGCTGGAGGCCCCATGTCAGACGTGGGGGAGAT
CATCGCCTCTTCTGGGTGTGCCAAGCCTGTCACTTATCCATCACTGCGGC
ACTCGCCAGAGATATGTTGGGACGACACCATGGGTAACCATCTTGATCCG
AGGCAGCATCGTGAAAGGCATGTGAGAATACTTTAATCTTGAGGAATGTT
TGGGAGAGCATGATCGAGACTTTCGACAGTGCAAAAAGTCTATGGATATG
CTCAAGAAATGTAGCGATGAGCAACGGCTTAAAAAAGCCAATGCAAGCAA
ATGCAACCCTGTGGAAAGAAGCCAATCAGTTATTGAGATACCACGCCCTC
CTATGTGTCATGTGTTTCAGCACGCATCCTCGCGAGTAGGGCTGCTGGAG
GCCCCATGTCAGACGTGGGGGAGATCATCGCCTCTTCTGGGTGTGCCAAG
CCTGTCACTTATCCATCACTGCGGCACTCGCCAGAGATATGTTGGGACGA
CACCATGGGTAACCATCTTGATCCGAGGCAGCATCGTGAAAGGCATGTGA
GAATACTTTAATCTTGAGGAATGTTTGGGAGAGCATGATCGAGACTTTCG
ACAGTGCAAAAAGTCTATGGATATGCTCAAGAAATGTAGCGATGAGCAAC
GGCTTAAAAAAGCCAATGCAAGCAAATGCAACCCTGTGGAAAGAAGCCAA
TCAGTTATTGAGATACCACGCCCTCCTATGTGTCATGTGTTTCAGCACGC
ATCCTCGCGAGTAGGGCTGCTGGAGGCCCCATGTCAGACGTGGGGGAGAT
CATCGCCTCTTCTGGGTGTGCCAAG
back to top
Synonyms
Publications