rna1147, rna1147 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1147
Unique Name	rna1147
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2886
Alignment location	CM002456.1:1308453..1308899 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100006g20.8608.mrna
Orig protein id	gnl\|cribi\|Naga_100006g20.8608
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1308453..1308899 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g20	gene1105	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1147	rna1147-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29519.1	cds1146	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1308453..1308899-
coding sequence from alignment at CM002456.1:1308453..1308899-

mRNA sequence

>rna1147 ID=rna1147|Name=rna1147|organism=Nannochloropsis gaditana|type=mRNA|length=2886bp
ATTTTATGGGCTTAAGGGGGGTGATGGTTTGACATAAGTGCCTTCATTAC
CTCCTGCTTGTTGAATCTCCTCTGTGGGAGTGGCCTTTTCTACACGACGT
CCCATGAGCTCCGATTTCACACATTCTCCACTTTCCTCAAACCAGAGGAT
TGATTTTCTCTTCTTCTAGGTCTGAAGATGGGATTTGGCGGGAATGTGGT
CGAATGGCGTGTTTTTTTCCGGGAGTCGGCCGTTGAGGGAGTGTCATTTC
CCTTCTTCCATGACGCTGCCCTGTTGACCAGTCTCAATGCACCGCGGGCA
CAGGCAGAGAAGGAAGAGGAGCGTACGGACACTTATCTTTCCGTCCCCCA
TGAGGCCGTGGGTTTAAAGCACAGAGGAACAAAGGGAAAGCTTGAGGTAA
AAATTCGCACTGCCGCTATAAACGAACATGAGGGCAATGGGGTGGCGGGA
ATGGAAAAATGGGTCAAATATAAATTAGGGAAAGGGACGAAGGGTTTCGG
AGAAGAAGAGGTCAAGAATAGACAGCTGATTGAACTAGAAAATGTCTTAA
AGGACCATCATCTATTTGATCCGAGAGTATATGGATCCTTGAAGGAACAG
ATTCAGGAAAGAGAAAGCAGAAATGACACGACTCCCATGAGCCGAGGCCT
GGAAGTGCAGCAGCAAAAGAGTGTGGATAAACGGCGCGTTGTAGGTGTTT
ATACAGGTTTGACGCTTACAGGTAATGGGAAGGCAGGGAAGCGCACAGAA
GTCCACGATAGACAGGTGGGGCTTGCGGAAAGGGTTCTTGCCCATTTGGG
TCTGGAGGGACACCGAGGACAAGAGCGAAAAGCAGATGAGAAACGGCAGA
GGGCGGTGGAGGTGATGATCGAAGATTGTTTACTGAAAGTTTGGTCTGAA
GGAAGTAATGTGGGGAAGAGGGAGAGCATTGGCTGGCGGACGTTTGCCGT
GGAAGGGAAGGAAAAGGACGTACAGGGCTTTTTGTCAGAGACGGCTTTAG
GAAGGTGGATCTATGCGGGGGGGCAAAACAGCCGAGCGGTGGTGGTAGGG
TATCCAGGGTTTCTCATCTCATTGGACAAAGAACAGTGGGAGGAGCAAGG
AACAGAGGAATATGGGAGAGCAAAAGAAGAGCATCGGGGAGGCGCTGTTG
GGGAAGATCAAGCAGGACAAAGCCGGGGGTCGAAAGAACGCATGGATTTA
AGTGAATGTTCGACCGATCCTGCCAGAGAGACCGCTTTGGAGGCACAAAT
TACACATGTACACGGCTCGGATCGCCCACCTGAAGTATGCCAAGTCGCCG
CAGCGGCCGTAGCAGCTGTCACCGCTTCACGCACTTTTCCCATTCCGCCG
TTGCCGACAAACCCGCACAGGGGGGTCAAAAAGGCATTCAAACTTAAGCA
AATCAGCTTGGTGGTGGTGCGGCATCCAGACACCGGAAATTTTCTGGCGG
TGGAAGAAACCAAAGACAAAGGGTGGTGGCTTCCTGCGGGGCATGTCGAC
CCTGGTGAGACTTTTACAGAAGCCGCCTACCGAGAAACCCTGGAAGAAGC
AGGCATCGGCGTCGTGTTGAGAGGTATCCTTTGTGTTGAACATAAGCTTT
CTTCCCCCTCGGCGGGGCGATTACGGGTCATCTTTCTGGGGGAGCCGATT
CATCCAACGGCTCCTCTAAAAAGCGTGGCCGACGAAGAGAGCATAGGTGC
GCGGTGGGTGACCGTGCAAGAAATGAAAGCATTGCGCCTGCGGGGTAACG
AGTTGATGAAGTGGGCGGAGTACGTGGAAAAGGGGGGGTCCGTATATCCT
TTAAGTTTGCTCGCAGAGGAGGGAGAAAGCTGCCCATTACTATGAAGGGA
ATAGAGAAAGCACAGAATGACGGTGGTGTGAGAAGAAACATAGATGAGAA
AGAATTGCAGCGACAGCATCAATAATTGCTCATCTTACATGCGTCTTCTG
TACGGGGCGTATCATCCCGACCTCTTCCCAAGTGTGTCACTGGTATTCAG
ATGTAATTATAACAAACACAAGTAAGCTTGATTATTCTACCATTTCGGTA
AGTAGAGTGGTGGAAAGAAAACGCCTTTGCCGACCCCCCCAAAGCCCAAG
TGTAGGATGGAAAATAAAAGGAACCGAGGCAGATACCCAGTAAAAAGTGT
TATATAGGCGCTTCGCGGAGCTACCATGTGTGCAACAGGATTCTAAAAGC
TTTCATATTCATTCTTCGTAAGCCAGTAGAGCATGAGACCTATAAATCAT
TTCGATTGACCCCACGGTCTCTTCGTCCAGCTTCCTTAAGGTTTCTTGCC
ATCCTTTTTACACAAGAAACCATTTCTGGCCCTGAAGACTCAAGGGTGAC
TTGCATATTACCACTTATCATGTAAAACGTCTCTCGTGCTCACCGAAACA
GATCCCTTGTCATCATCCGGCCTCTTCATTCCTTCCACGTCCACACCTAT
TTACAGCTGCAAAAGGGTTCCCCCAATATATTGAAAGTCAATTCATGCAA
AAGCAACGATGCGGCATGTGTGGTGGAACAAAATCGGGTTACTTCATGTC
CAAATGCTGCTTGGCCGATCCCTTCCGGAAGCCTAGGTGGTCGCCTTCGG
ATTGGATTCTTTGCATGACATCGATCTTGTGTGGCAAGAATGTCGATGGG
ATTGCCAGTATCTTTTAGATTACGAGAAAAGCGCATCTAGGATCATGACA
CCGCAGGCTTTACACTCACATGCCTTTCACGATGCTGCCTCGGATCAAGA
TGGTTACCCATGGTGTCGTCCCAACATATCTCTGGCGAGTGCCGCAGTGA
TGGATAAGTGACAGGCTGTGGGTCTCCCACTACGCGAGAAGAATTCATTT
CACTTCACAGGAGGGCGTGGTATCTCAATAACTGAT

protein sequence of rna1147

>rna1147-protein ID=rna1147-protein|Name=rna1147|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MRFSRNLKDTGNPIDILATQDRCHAKNPIRRRPPRLPEGIGQAAFGHEVT
RFCSTTHAASLLLHELTFNILGEPFCSSRETFYMISGNMQVTLESSGPEM
VSCVKRMARNLKEAGRRDRGVNRNDL

mRNA from alignment at CM002456.1:1308453..1308899-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1147 ID=rna1147|Name=rna1147|organism=Nannochloropsis gaditana|type=mRNA|length=447bp|location=Sequence derived from alignment at CM002456.1:1308453..1308899- (Nannochloropsis gaditana)
ATGCGCTTTTCTCGTAATCTAAAAGATACTGGCAATCCCATCGACATTCT
TGCCACACAAGATCGATGTCATGCAAAGAATCCAATCCGAAGGCGACCAC
CTAGGCTTCCGGAAGGGATCGGCCAAGCAGCATTTGGACATGAAGTAACC
CGATTTTGTTCCACCACACATGCCGCATCGTTGCTTTTGCATGAATTGAC
TTTCAATATATTGGGGGAACCCTTTTGCAGCTGTAAATAGGTGTGGACGT
GGAAGGAATGAAGAGGCCGGATGATGACAAGGGATCTGTTTCGGTGAGCA
CGAGAGACGTTTTACATGATAAGTGGTAATATGCAAGTCACCCTTGAGTC
TTCAGGGCCAGAAATGGTTTCTTGTGTAAAAAGGATGGCAAGAAACCTTA
AGGAAGCTGGACGAAGAGACCGTGGGGTCAATCGAAATGATTTATAG

Coding sequence (CDS) from alignment at CM002456.1:1308453..1308899-

>rna1147 ID=rna1147|Name=rna1147|organism=Nannochloropsis gaditana|type=CDS|length=762bp|location=Sequence derived from alignment at CM002456.1:1308453..1308899- (Nannochloropsis gaditana)
CACGAGAGACGTTTTACATGATAAGTGGTAATATGCAAGTCACCCTTGAG
TCTTCAGGGCCAGAAATGGTTTCTTGTGTAAAAAGGATGGCAAGAAACCT
TAAGGAAGCTGGACGAAGAGACCGTGGGGTCAATCGAAATGATTTATAGA
TGCGCTTTTCTCGTAATCTAAAAGATACTGGCAATCCCATCGACATTCTT
GCCACACAAGATCGATGTCATGCAAAGAATCCAATCCGAAGGCGACCACC
TAGGCTTCCGGAAGGGATCGGCCAAGCAGCATTTGGACATGAAGTAACCC
GATTTTGTTCCACCACACATGCCGCATCGTTGCTTTTGCATGAATTGACT
TTCAATATATTGGGGGAACCCTTTTGCAGCTCACGAGAGACGTTTTACAT
GATAAGTGGTAATATGCAAGTCACCCTTGAGTCTTCAGGGCCAGAAATGG
TTTCTTGTGTAAAAAGGATGGCAAGAAACCTTAAGGAAGCTGGACGAAGA
GACCGTGGGGTCAATCGAAATGATTTATAGATGCGCTTTTCTCGTAATCT
AAAAGATACTGGCAATCCCATCGACATTCTTGCCACACAAGATCGATGTC
ATGCAAAGAATCCAATCCGAAGGCGACCACCTAGGCTTCCGGAAGGGATC
GGCCAAGCAGCATTTGGACATGAAGTAACCCGATTTTGTTCCACCACACA
TGCCGCATCGTTGCTTTTGCATGAATTGACTTTCAATATATTGGGGGAAC
CCTTTTGCAGCT

Synonyms

Publications