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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100006g28.8662.mrna |
| Orig protein id | gnl|cribi|Naga_100006g28.8662 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1283485..1287110 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1139 ID=rna1139|Name=rna1139|organism=Nannochloropsis gaditana|type=mRNA|length=4106bp
CGAAGACAGGGGCTTGTCTCTTAGAGGACCGTCCTTGCTGGCCCGTCTCA
TGTGCTATGCCGTGGGCTTTGCATAAAGGAGATTCAGGCCTTGAACTCGT
GGATGTGATGGATAGCCAGTGGCTTTCTTTACCGGAAGGTGGCATGCAGG
AAGCAAAGAGAGTCGAAGAAAAGCTCCAGTAGCCATTCCTCCATGCCCAG
TGGATAAAAACCCCTAGCCGCGTTCCTCTTTTCTGTACAGAATGAGGGTC
TGCCTCGATCCCTACTCTGACATAAGAGTGTTCATGTTCTTGGACACATA
TTTCCGCTATAGCTGGCCTGAGTTGTGGCACGAAGTTGTGTTCCATTGAA
CTCACACCGGGATCCTGTATGCCACGTCTGATACCTTTCATCTCCCCTAT
CACGAACTGCAGTGAGTACTTGCAGTTGTTGCAAAGTGCGAAAGTATGGG
TAACCAAAATAGTGTCTACTTCGGCGCCCCTCCTGTTCGAAAAAAGGCTC
CGCAACATGCGGACATACAAGAAGCTTGGCGGCAGATCGCCTCGAAGGTC
GCCCGCGACAAAGGTTTTGAGCACGGGCGCAAACGTAAAGTGGCCATAAT
AGGATCGGGTGTGGCAGGTTTAGGTGCCGCGTACCATTTGCTGACCTGCG
CTGCGCCTGGTGAGGAAGTAGAACTGGTAGTATATGAGGCCAGCGGCACT
CCTGGCGGTCATGCACACACGGAGCTAGTTCGGGAGGAAGACGGCAAAAT
AATCGCGTGCGACACAGGCTTCATGGTTTTTAACCATCAAAATTACCCGA
ACTTGGTGGAACTCTTCGCAGAGCTGGGCGTGGACGACGAGAACACAAAC
ATGAGCTTCGCGGTCTCCATGGACGAAGGGAAAGTTGAGTGGTGCTCAGA
GTCCGTCAAAACCTTGGCCGGGCCCGTCTATCGAGCCATGCTCAAGGACA
TGCTTCGCTTCAATCGCACCGCATCCAACCTTCTCCTAGCCGAACCCGAG
GACCCGCGCCGGGCGTGGACTTTGGCTGAATTCCTCGAGAAGGAGAAATA
CGGACCTGAATTCACCAACTACTACATCGTCCCCATGTGCGCCGCCCTCT
GGTCGTCGTCGGCCGCGGACGTCCTGGCTGCCTCAGCCTACGCGCTTTTG
ACCTTCATGGACAACCACTGCATGCTCCAGCTTTTCAACCGGCCGCAATG
GAAGACGGTGGCGCAGCGGAGTCAGACCTACGTGCAAAAAATTGTTGCCC
TGCTGGGGGAGCGTCTCCGCTTGAATGCGCCCGTGAAGAAGGTGGTGGTG
CATGGGAAAGGCAAGGTAGAAGTGACGGACGCGAGCTACCACGCCGAGAC
CTTTGACGAGGCGATTTTTGCCTGCCATCCCGACCAGTCCCTGGCGTTGC
TGGAGGGGGAGGCGCGGGTCCGCCTGGCCCCGTACCTGGAGGCCTTCAAA
TACGCGCCGAATGCGTGCTACCTGCACAGCGACCCGCGGCTGATGCCCCG
CAAGAAGGAGGCGTGGGGAAGTTGGAACTATATTGGCACGTCGGCAGGGA
TGCTCGGGCCGGGTCGGGAGAAGCCTGTTTTTGTGACTTACTGGCTGAAT
CAGCTTCAGAACCTTGAAACCGAGACTCCCTACTTCGTCTCCTTGAACCC
CCTCTTCCCCCCCGACCGGGCATTGACCCACAAAATCCTCCGGGAGTCCC
ACCCGCAATTTACCCCCGCGACGGAAGCGGCCCAACGCAGGATGACCGAG
GTGCAGGGTCAGGACGGGCTCTGGTTTTGTGGGGCCTGGATGGGCCATGG
CTTTCACGAGGACGGCTTACGGTCAGGCTTGGAGGTGGCGACGGCCTTGA
GCGGTCAAAAGGCAGCCTGGATGCCGCCCGAGGCGGAGGCTCCCGTGTAC
CCGATGGTGAAAGCGCATATGAATGCACGGAGTACTTGGGAACGCTGCCA
AGATTTGCTGGGTCAATTAGCCTGCGTTCCCATTCGCAACTTTTTAGCCT
CGTCCATTCAAGAAGGATGCCTGGTCCTGCGCCTACCCGGGACAGGAGAC
AAATTGTGGTTTGGAGACCGAACGGCGGGGAGGAAGGAGACGGTGGTGTT
GCGGGTGCAGAGTTGGTGGTTTTTTGTCCGCGTTGCCCTAGAGTACGACC
TCGGGCTAGCGCGTGCCTACATGGCCGGCGAATTCGAAGTCGAGGGGACC
GGGTGGAACAGCGACGGGCTGACCAGGCTCTTTCTCTTGTTCATTCGGAA
TCGGGATGCCCCCTCTGGCGGGAAGAGGTTCGCTGTCTCGGCGCTGTTGA
CCTCGTGGATAGGCTACGGCCTGAATTTCCTCCGGTACCGGCTCTCGATG
GACAACTCATTGGCCGGCTCTCGGCAGAACATCTCGGCGCATTACGACAT
TGGGAACGATCTCTACACGCTCATGCTGGACAAGTCACTCATGATGTACT
CGTCGGCCATATATCACCTAGAGCTGACCCCTTCCTCCCTCACGGCCTCC
GCTGAGGCTACTTCTTCGGACCTTGTACCCGCCGGAAATGGCAATGGTGT
CGTCGTCAAGTCCTCCTTTCCTCCCTCTTCCTACTCTATGGCATTCAAAG
GCTCCTTGGAAGACGCGCAGCTTCGGAAGGTTGATACGTTGATCCGGACA
TGCCGAGTCGAAAGAAAGCATACCTTACTCGACATTGGCTTCGGTTGGGG
CGGGATCGCCATTCGGGCTGCGGAGACGATTGGATGCAAGGTAGTGGGCA
TCACCCTGAGCAAGGAGCAAAAGGCGTTGGCCGAGGAGAAGGTCCGGGCG
AAAGGACTCGAGCATTTGATCCATTTTGAGCTGGTCGACTACAGGGTGTT
CGCACGCCGGTAAGTGACAATTACCGAGACAGAGAAAAGCATCGGATCCG
AGGTGGTGGCGAATGTACGCATTTTGGGATGCTGTTGGTGCGTCTCCCAA
GCGCCTGCTCTTTCGCGCATGAAAAGTACTAGAAGGGGATGTCCCACTGG
TGATAGACGGGATGGATGTCATTTTGATGAAGGGTTCAAGTTGCATATTC
GAATTCCTGACAAACACTTGCTCTCAACCTTTTTGAAAGGCATCCCGGCG
AATTCGACCGGATTATTTCATGTGAAATGATCGAAGCTGTCGGGCACAGT
CACCTGGGCGAATATTTTCACGCGGTGGGCAGCCTGCTTAAACCGTCTGG
AGTCTTTGTGATGGAGGCGATCACCACGCCTGAAAGCCGTTACGTGGACT
ACCTTAAAAGCACCGACTTTATCAATACGATCGTCTTCCCGGGCTCCTGT
TGTCCCTCTCTTACGTCTCTGTTGGAGGCAATGGCCCGGCACAGCGCCCT
CAGTCTGGAGGGTTTAATCAATATCGACGTTCACTACGCCGAGACACTCA
GGGAATGGCGACGTAGGTTCAACCGCGGTCTTCATGCGGTGAAAACTCAG
GGCTTTGATGACGTTTTTGTGCGCTGCTGGAATTACTACCTTTGTTACTG
TGAGGCGGCTTTTGAAAGCAAGACAGAGGGATGTTTGATTTTGACTTTCT
CTCGCCCGGGAAACACCCTCAGCCTCACTGACAACACCCCGTGCCGTGTC
CTCTCCTCTACGTCTCCCTCCGCAACCTTTTTCGCTTCCGAGGTGGTTAC
AAATATGGTGAGCATCGGAACCAGTCCGCGGAAGAAGGGGTCAAGAGATG
GTGGGAGTGGGCCGTCGACCCCGCAGCGACTGTTGCAATATGCCCGAGAG
AAGTTCACAGTGGGAACGGAATAATAGAAGTGATAAAAGAAGAACCTCAT
GTTCAAGCACTACTGTTCCATGTTTCTCAGCTTGTGGGGGGTATTGAACG
ACAACAGTGGTTGAAAGCTTACATGCAGGTTTTGAGCTTGAGTGAGCTTC
TTATCTATAACAATGTAGAAACTCAGGATCAAATGTGCAGGACATCAGCT
CGGGAGGTCTGAGCTGTTTTTTGGGAGCAATCACACTTCTTACTGGACGA
CAATTGAGACTTTTACAGTTCAGAAACCCTTTCCCGAAAATATGTGTTGG
TCCGTACCGATTTTCATACTAGATGTAAGGGGGAAAAAATGATGACGCTC
CATAAA back to topprotein sequence of rna1139 >rna1139-protein ID=rna1139-protein|Name=rna1139|organism=Nannochloropsis gaditana|type=polypeptide|length=518bp
MLAVAGGPSSEPVAARPRRSPRRTPPFKMEQMLSVLLCLIPSGLRPLLSP
PVTPPNPFFARPPPVLPSLPLPRPPPPRKPRRPEHEILDAFISLHLLPPS
SSLTALRNFKLERLTGYGLREYWLVPSGGALKPQLYTARFGSKIEAMVDT
QTGKTKKMIEAVYSDRSRHHFDMRRLIDGFTGTEGTVSRKGIVGLLSKEE
VEDVFRGKRKRRQGRRGEKRRQGLGQREKGLKEEEKKHEGEELAGVKGAG
EGSQGTVPGGEGEKDDDDGERNLSIGVAVNGSLKNEGKGVGEEVEKQALP
ESAEKGSKERGLLTALSMMLPNALGGQKKEGDEKRGEDGMLGVEKARLES
HRSPSSGTALAAAARMALSTRMASNGVPAPQLPQSLVAPFAPLPPSTFPS
APLGPVGPTDVVGPARGHPRPSSPSQKSVRTTCSPAPAGRPSLLSPGQGD
QKEKCEGEGPTVLRRQQQAHRHKEQALDRPSGQPVTLAALARAAAVSKQQ
LKHLPPRPQEQASVRQQT back to topmRNA from alignment at CM002456.1:1283485..1287110- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1139 ID=rna1139|Name=rna1139|organism=Nannochloropsis gaditana|type=mRNA|length=3626bp|location=Sequence derived from alignment at CM002456.1:1283485..1287110- (Nannochloropsis gaditana)
CTCTGCTCTTGCTGCCTGTTGATCAATTTTCCACTTCATTCATGTCTGCA
CATATACAGGATTGTCTATGACGTCTCTTGTGACATCATGGCTACGTTCG
AGTGGCGAATTTGCCAATTATAGCGGAGCTGATACGCGGGATAACCGCAA
ATCTATGAAAGAATCAGTGGCCAGTCCACGGTCCGACGAGCGCAGTAACG
ACGGCTTTTCCAAATGCCGTCCTAGAACTTTCGCAGACATGGCGGAGGAA
AACGAAGCGTTGCGGAAAGAAAATGAAATTTTGCAGAAGCAACTTGTGGA
CGAGAAAGAAAAGCATGCAGAGGAGGTCAAAGATCTGATGTATCGCTTGA
CGGAAGTAGAAAAACGCGCATCGGCGGCCGCTCTTGCAACTGGAGCGAAA
GGCGTGAGTGTGGACGCGATTTGTGAAGAAACAAGCGATACAAAGAAAGA
GAAAAAGATAGATGGTCAGGGAGGCATGCACGCAGGAGGGAAAGAAGAGG
AGCCACTGGAGGATCCGTCTAGGAAGAGGGAAGGAGAGAAGGGCATGTGT
GACAGCATGCAGGAGAAATGGGAAGGGACGAGGCTGACGCGCGGTTCATT
CAAGAAGAAGAACGATGAAGACGCCGTCGCCTGGACCTCAAACAACAGTA
TGGCCGGGAATTCCCCCTGTGCGGTCGTCCCGGTCGTGAATCATTTGAAT
GGTATAGACACGCATGCTCCTGGGACTGGGGGCCCACGACGGCCCCAGCA
GGCGCGCATGATGCGTGAATTGAAGAGCATCGGTGCCTTGGACGAGGAGG
CCACGGATGCACGGAATTCGCTGGATTTGCGGCGTTTGGTGGGCCTGGGA
ATGTGGAAATGGTTTGCGGTCGAGCAGGAGGAGGACAAGGGGGGCTGGAA
GCAACGGCGGGAAGGCAATCGTCCCAAGATGTTGCAGTTCCTGGGTGTGT
TCAAGAAGGTCAACATGCGGGCCAAGCCCGCTCCTCAGGTCCTGGTGGAG
TTTCAGCAGCAACCCTGTGAATGGTGGTCCGTGGAGGGCCTTGTGAATGA
GTACAGGGTCTCCACCGTCCGCGGCATCAACATGTTCTACTCCCGGGAGA
AAGTGGCCGCTTTCCTGGAGCGGTTGGAGGGAGGGGAAGGGGTGCGGAAG
AGGGGCGGGCGACAGACGGACCGAGGGGCGGGGACCGAGGAGGAGAAGGA
GGACGGGGGGGAGGGAGGGAAGGAGGCGGACGGAGGAAGGGGGAAGCGGA
GCAGTGGAGTGGAAAGAAAGGGGCACGCAGGCGCTCTCGGACGGCGTAGA
CGGAGGGGTAGGGGGGAAGCGGAAAGGGCGGAGCAGGTCCCGGCCAGGGT
CTCCCAGGGATGCTTGCGGTGGCGGGAGGGCCGTCAAGCGAACCCGTCGC
AGCACGTCCGCGGAGGAGCCCCCGTCGCACCCCGCCCTTCAAAATGGAGC
AAATGCTCTCGGTCCTTCTCTGCCTCATCCCGTCCGGGCTCAGGCCGCTT
CTGTCGCCCCCAGTGACGCCACCAAACCCATTCTTTGCACGTCCTCCCCC
AGTCCTTCCCTCCCTCCCTCTCCCGCGCCCTCCCCCTCCCCGAAAACCCC
GTCGGCCGGAGCATGAAATCCTTGACGCGTTCATCTCCTTGCACCTGCTC
CCTCCCTCCTCCTCCCTGACCGCCCTTCGAAACTTCAAGTTGGAGCGCTT
GACCGGGTACGGCCTGCGGGAGTACTGGCTGGTGCCGTCCGGGGGGGCCT
TGAAGCCCCAACTGTACACAGCCCGCTTTGGCTCCAAGATCGAAGCCATG
GTCGACACACAGACGGGCAAGACGAAAAAGATGATCGAGGCGGTTTACTC
GGACCGGAGCCGGCATCATTTCGACATGCGGCGGCTCATCGACGGCTTCA
CAGGGACGGAGGGCACCGTGTCGAGGAAAGGTATTGTGGGCTTGTTGAGC
AAGGAGGAGGTGGAGGACGTCTTTCGGGGCAAGAGGAAGCGGAGGCAAGG
CCGACGGGGGGAGAAGAGGCGGCAAGGCTTAGGTCAAAGGGAAAAGGGAT
TGAAGGAGGAGGAAAAAAAACACGAGGGGGAAGAGCTTGCGGGAGTGAAA
GGGGCCGGTGAGGGCAGCCAGGGGACGGTCCCGGGGGGGGAAGGGGAAAA
GGACGATGACGATGGCGAGAGGAATTTGAGCATTGGAGTCGCTGTCAACG
GGAGCCTGAAAAACGAAGGGAAGGGGGTAGGGGAGGAAGTGGAGAAGCAG
GCATTGCCCGAGAGTGCGGAGAAGGGCTCCAAAGAAAGAGGTTTGCTGAC
GGCCTTGTCGATGATGCTACCGAATGCCTTGGGGGGACAAAAGAAGGAGG
GTGATGAGAAGAGGGGAGAGGATGGTATGCTTGGCGTGGAGAAGGCCAGG
TTGGAGTCGCACAGGTCACCAAGTTCCGGCACCGCATTGGCGGCAGCCGC
CCGTATGGCTCTCAGCACGCGGATGGCTAGCAACGGCGTCCCCGCACCGC
AGCTTCCCCAATCTCTCGTTGCTCCGTTTGCTCCCTTGCCGCCTTCGACA
TTTCCCTCTGCCCCTCTCGGACCGGTCGGTCCGACGGACGTCGTGGGCCC
TGCTCGCGGTCACCCTCGACCATCGTCTCCGTCACAGAAAAGCGTCCGCA
CGACATGCAGCCCTGCTCCTGCCGGTCGCCCCTCCTTGCTCTCCCCCGGC
CAAGGAGATCAGAAGGAGAAGTGCGAAGGGGAGGGGCCAACGGTGCTGCG
AAGACAACAGCAAGCGCATAGGCACAAAGAGCAGGCCCTTGATCGACCCA
GTGGCCAGCCTGTTACCCTTGCCGCCTTGGCAAGAGCGGCTGCGGTCTCA
AAGCAACAGTTGAAGCATCTTCCACCGCGCCCACAAGAGCAAGCTTCAGT
GAGGCAGCAGACATGAGGATAGGCAAGCTTTCTAGCCCTCGTTGGGTTTG
CGAAGGTTTGCTTATTCGGTGATGTTTGGATGCAGGTGTTGCAATGAAAT
TTGAGAAGATAAGCGTGGAAATCATCCAAGAGGAGAAATGGCACGTCAAG
AATGTCGGATCGACCCGCACAGCGCAATGAATGGAATGAATCTAGTAGTA
AACATGACCGTGAAAGCTGTAGCCCGTTAAGCGGTGGGAAAGCAACTATT
ATCGGCTGGTTTTATGGAGCGTCATCATTTTTTCCCCCTTACATCTAGTA
TGAAAATCGGTACGGACCAACACATATTTTCGGGAAAGGGTTTCTGAACT
GTAAAAGTCTCAATTGTCGTCCAGTAAGAAGTGTGATTGCTCCCAAAAAA
CAGCTCAGACCTCCCGAGCTGATGTCCTGCACATTTGATCCTGAGTTTCT
ACATTGTTATAGATAAGAAGCTCACTCAAGCTCAAAACCTGCATGTAAGC
TTTCAACCACTGTTGTCGTTCAATACCCCCCACAAGCTGAGAAACATGGA
ACAGTAGTGCTTGAACATGAGGTTCTTCTTTTATCACTTCTATTATTCCG
TTCCCACTGTGAACTTCTCTCGGGCATATTGCAACAGTCGCTGCGGGGTC
GACGGCCCACTCCCACCATCTCTTGACCCCTTCTTCCGCGGACTGGTTCC
GATGCTCACCATATTTGTAACCACCT back to topCoding sequence (CDS) from alignment at CM002456.1:1283485..1287110- >rna1139 ID=rna1139|Name=rna1139|organism=Nannochloropsis gaditana|type=CDS|length=1557bp|location=Sequence derived from alignment at CM002456.1:1283485..1287110- (Nannochloropsis gaditana)
ATGCTTGCGGTGGCGGGAGGGCCGTCAAGCGAACCCGTCGCAGCACGTCC
GCGGAGGAGCCCCCGTCGCACCCCGCCCTTCAAAATGGAGCAAATGCTCT
CGGTCCTTCTCTGCCTCATCCCGTCCGGGCTCAGGCCGCTTCTGTCGCCC
CCAGTGACGCCACCAAACCCATTCTTTGCACGTCCTCCCCCAGTCCTTCC
CTCCCTCCCTCTCCCGCGCCCTCCCCCTCCCCGAAAACCCCGTCGGCCGG
AGCATGAAATCCTTGACGCGTTCATCTCCTTGCACCTGCTCCCTCCCTCC
TCCTCCCTGACCGCCCTTCGAAACTTCAAGTTGGAGCGCTTGACCGGGTA
CGGCCTGCGGGAGTACTGGCTGGTGCCGTCCGGGGGGGCCTTGAAGCCCC
AACTGTACACAGCCCGCTTTGGCTCCAAGATCGAAGCCATGGTCGACACA
CAGACGGGCAAGACGAAAAAGATGATCGAGGCGGTTTACTCGGACCGGAG
CCGGCATCATTTCGACATGCGGCGGCTCATCGACGGCTTCACAGGGACGG
AGGGCACCGTGTCGAGGAAAGGTATTGTGGGCTTGTTGAGCAAGGAGGAG
GTGGAGGACGTCTTTCGGGGCAAGAGGAAGCGGAGGCAAGGCCGACGGGG
GGAGAAGAGGCGGCAAGGCTTAGGTCAAAGGGAAAAGGGATTGAAGGAGG
AGGAAAAAAAACACGAGGGGGAAGAGCTTGCGGGAGTGAAAGGGGCCGGT
GAGGGCAGCCAGGGGACGGTCCCGGGGGGGGAAGGGGAAAAGGACGATGA
CGATGGCGAGAGGAATTTGAGCATTGGAGTCGCTGTCAACGGGAGCCTGA
AAAACGAAGGGAAGGGGGTAGGGGAGGAAGTGGAGAAGCAGGCATTGCCC
GAGAGTGCGGAGAAGGGCTCCAAAGAAAGAGGTTTGCTGACGGCCTTGTC
GATGATGCTACCGAATGCCTTGGGGGGACAAAAGAAGGAGGGTGATGAGA
AGAGGGGAGAGGATGGTATGCTTGGCGTGGAGAAGGCCAGGTTGGAGTCG
CACAGGTCACCAAGTTCCGGCACCGCATTGGCGGCAGCCGCCCGTATGGC
TCTCAGCACGCGGATGGCTAGCAACGGCGTCCCCGCACCGCAGCTTCCCC
AATCTCTCGTTGCTCCGTTTGCTCCCTTGCCGCCTTCGACATTTCCCTCT
GCCCCTCTCGGACCGGTCGGTCCGACGGACGTCGTGGGCCCTGCTCGCGG
TCACCCTCGACCATCGTCTCCGTCACAGAAAAGCGTCCGCACGACATGCA
GCCCTGCTCCTGCCGGTCGCCCCTCCTTGCTCTCCCCCGGCCAAGGAGAT
CAGAAGGAGAAGTGCGAAGGGGAGGGGCCAACGGTGCTGCGAAGACAACA
GCAAGCGCATAGGCACAAAGAGCAGGCCCTTGATCGACCCAGTGGCCAGC
CTGTTACCCTTGCCGCCTTGGCAAGAGCGGCTGCGGTCTCAAAGCAACAG
TTGAAGCATCTTCCACCGCGCCCACAAGAGCAAGCTTCAGTGAGGCAGCA
GACATGA back to top
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