rna1138, rna1138 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1138
Unique Name	rna1138
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1133
Alignment location	CM002456.1:1279695..1283950 +

Link to JBrowse

Properties


Property Name	Value
Product	cyclopropane fatty acid synthase
Orig transcript id	gnl\|cribi\|Naga_100006g29.8684.mrna
Orig protein id	gnl\|cribi\|Naga_100006g29.8684
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1279695..1283950 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g29	gene1096	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1138	rna1138-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29595.1	cds1137	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1279695..1283950+
coding sequence from alignment at CM002456.1:1279695..1283950+

mRNA sequence

>rna1138 ID=rna1138|Name=rna1138|organism=Nannochloropsis gaditana|type=mRNA|length=1133bp
GAAGGCTGGACAATGCTTGTCGTCTTCTAGACAGGAGGTGTGGGCATTTT
TTTCCTCTTACGTTGAAATTTTGAAGCTGATATATTTAGCAGAAAGCCCC
TTCCTTTCCCCGCCTAATTGTGGCCGCTGTCTAGCACCCCCTTGCTCCTA
TCTACATGCAAGCAGAGAGCATTTCCTTTATGTGGCTGACTAATACGTGC
CATTTTATTTTTCGTTTCACTTGTAGGGGACAGCGTCTTTTGTGAAGGCC
CTAAAATTCGACATGGAGCAGTTTGCCCGATACCTCTAACCCCGACCCGG
CTGCTCGCACGACCCGTCACTATTATATAATCATGGACCGTGGTTACTTC
TCTGTGGACGCCATATTGGCCGCGGAAGATCGTGTCCCCGTCGTTTTCAA
TACCATGGCGGCCTCGCTCGGTTTCCTTGACCCTGCTTGCAAGGACGAGG
ATTTACCTGCCCGCTCGCGCGTGGAGCTTCCCCTATGGTTGGCTCTGGCT
TTGCAGGCCAAAAACATGGTGCGCGTGGAGCTTCCGAGGCATTATTCGGC
GCGCTTCAGGGAGGATTTGTTGGCGGGACCCGATGCCGTGGACATTCGAG
AGCGCAGCGCCTTCTTCTACGAGACCGGGACGGCCCTCGCCCGTGTCAAG
CGGGATGACCACCTGCAGCGCACGATGCGGATGGTCTTTGCCGGGCCCCG
ATTTCGGCACATTTTAGACGCTAGCTTGAACAGCGGAGGGGACGACATGA
CAGATTTCCTCCAGGATTTGCCCCACGCGGAACGAGCGTTGTTCCACGCC
GGCTCCCAGGGCTCCAAGGCCCAGGAGGCGTACAAGAAGGGTACACACGC
GCAGCTGGATATGGCCGAGGTTTTGAAAGGGGGGAGTGCCCCCGCGGATA
GAACTGTGGGGGGCCAAGGAGGGAAAGAAAGCAATCCTTCGTTGTAAAGT
GGGAGGGGGTGGCGGGACGAGGGGACGAGTCTGCCGTAGAGTCTGCCGGC
TCGCTCGGAATGGAAAATGGAAGCAAGTGCCAGCACCGCACACAGGCATT
GCAGTCAGACGTTCCCTTGCCACATGCCTGTGGACAGCGCGACCTGTGTG
GACAGAAAATTACGAAACCTCGCCAACATCTGT

protein sequence of rna1138

>rna1138-protein ID=rna1138-protein|Name=rna1138|organism=Nannochloropsis gaditana|type=polypeptide|length=805bp
MGNQNSVYFGAPPVRKKAPQHADIQEAWRQIASKVARDKGFEHGRKRKVA
IIGSGVAGLGAAYHLLTCAAPGEEVELVVYEASGTPGGHAHTELVREEDG
KIIACDTGFMVFNHQNYPNLVELFAELGVDDENTNMSFAVSMDEGKVEWC
SESVKTLAGPVYRAMLKDMLRFNRTASNLLLAEPEDPRRAWTLAEFLEKE
KYGPEFTNYYIVPMCAALWSSSAADVLAASAYALLTFMDNHCMLQLFNRP
QWKTVAQRSQTYVQKIVALLGERLRLNAPVKKVVVHGKGKVEVTDASYHA
ETFDEAIFACHPDQSLALLEGEARVRLAPYLEAFKYAPNACYLHSDPRLM
PRKKEAWGSWNYIGTSAGMLGPGREKPVFVTYWLNQLQNLETETPYFVSL
NPLFPPDRALTHKILRESHPQFTPATEAAQRRMTEVQGQDGLWFCGAWMG
HGFHEDGLRSGLEVATALSGQKAAWMPPEAEAPVYPMVKAHMNARSTWER
CQDLLGQLACVPIRNFLASSIQEGCLVLRLPGTGDKLWFGDRTAGRKETV
VLRVQSWWFFVRVALEYDLGLARAYMAGEFEVEGTGWNSDGLTRLFLLFI
RNRDAPSGGKRFAVSALLTSWIGYGLNFLRYRLSMDNSLAGSRQNISAHY
DIGNDLYTLMLDKSLMMYSSAIYHLELTPSSLTASAEATSSDLVPAGNGN
GVVVKSSFPPSSYSMAFKGSLEDAQLRKVDTLIRTCRVERKHTLLDIGFG
WGGIAIRAAETIGCKVVGITLSKEQKALAEEKVRAKGLEHLIHFELVDYR
VFARR

mRNA from alignment at CM002456.1:1279695..1283950+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1138 ID=rna1138|Name=rna1138|organism=Nannochloropsis gaditana|type=mRNA|length=4256bp|location=Sequence derived from alignment at CM002456.1:1279695..1283950+ (Nannochloropsis gaditana)
CGAAGACAGGGGCTTGTCTCTTAGAGGACCGTCCTTGCTGGCCCGTCTCA
TGTGCTATGCCGTGGGCTTTGCATAAAGGAGATTCAGGCCTTGAACTCGT
GGATGTGATGGATAGCCAGTGGCTTTCTTTACCGGAAGGTGGCATGCAGG
AAGCAAAGAGAGTCGAAGAAAAGCTCCAGTAGCcattcctccatgcccag
TGGATAAAAACCCCTAGCCGCGTTCCTCTTTTCTGTACAGAATGAGGGTC
TGCCTCGATCCCTACTCTGACATAAGAGTGTTCATGTTCTTGGACACATA
TTTCCGCTATAGCTGGCCTGAGTTGTGGCACGAAGTTGTGTTCCATTGAA
CTCACACCGGGATCCTGTATGCCACGTCTGATACCTTTCATCTCCCCTAT
CACGAACTGCAGTGAGTACTTGCAGTTGTTGCAAAGTGCGAAAGTATGGG
TAACCAAAATAGTGTCTACTTCGGCGCCCCTCCTGTTCGAAAAAAGGCTC
CGCAACATGCGGACATACAAGAAGCTTGGCGGCAGATCGCCTCGAAGGTC
GCCCGCGACAAAGGTTTTGAGCACGGGCGCAAACGTAAAGTGGCCATAAT
AGGATCGGGTGTGGCAGGTTTAGGTGCCGCGTACCATTTGCTGACCTGCG
CTGCGCCTGGTGAGGAAGTAGAACTGGTAGTATATGAGGCCAGCGGCACT
CCTGGCGGTCATGCACACACGGAGCTAGttcgggaggaagacggcaaAAT
AATCGCGTGCGACACAGGCTTCATGGTTTTTAACCATCAAAATTACCCGA
ACTTGGTGGAACTCTTCGCAGAGCTgggcgtggacgacgagAACACAAAC
ATGAGCTTCGCGGTCTCCATGGACGAAGGGAAAGTTGAGTGGTGCTCAGA
GTCCGTCAAAACCTTGGCCGGGCCCGTCTATCGAGCCATGCTCAAGGACA
TGCTTCGCTTCAATCGCACCGCATCCAACCTTCTCCTAGCCGAACCCGAG
GACCCGCGCCGGGCGTGGACTTTGGCTGAATTcctcgagaaggagaaata
cGGACCTGAATTCACCAACTACTACATCGTCCCCATGTGCGCCGCCCTCT
GGTCGTCGTCGGCCGCGGACGTCCTGGCTGCCTCAGCCTACGCGCTTTTG
ACCTTCATGGACAACCACTGCATGCTCCAGCTTTTCAACCGGCCGCAATG
GAAGACGGTGGCGCAGCGGAGTCAGACCTACGTGCAAAAAATTGTTGCCC
TGCTGGGGGAGCGTCTCCGCTTGAATGCGCCCGtgaagaaggtggtggtg
catGGGAAAGGCAAGGTAGAAGTGACGGACGCGAGCTACCACGCCGAGAC
CTTTGACGAGGCGATTTTTGCCTGCCATCCCGACCAGTCCCTGGCgttgc
tggagggggaggcgcgggtcCGCCTGGCCCCGTACCTGGAGGCCTTCAAA
TACGCGCCGAATGCGTGCTACCTGCACAGCGACCCGCGGCTGATGCCCcg
caagaaggaggcgtggggaagTTGGAACTATATTGGCACGTCGGCAGGGA
TGCTCGGGCCGGGTCGGGAGAAGCCTGTTTTTGTGACTTACTGGCTGAAT
CAGCTTCAGAACCTTGAAACCGAGACTCCCTACTTCGTCTCCTTgaaccc
cctcttcccccccgaccggGCATTGACCCACAAAATCCTCCGGGAGTCCC
ACCCGCAATTTACCCCCGCGACGGAAGCGGCCCAACGCAGGATGACCGAG
GTGCAGGGTCAGGACGGGCTCTGGTTTTGTGGGGCCTGGATGGGCCATGG
CTTTCACGAGGACGGCTTACGGTCAGGCTTGGAGGTGGCGACGGCCTTGA
GCGGTCAAAAGGCAGCCTGGATGCCgcccgaggcggaggctcCCGTGTAC
CCGATGGTGAAAGCGCATATGAATGCACGGAGTACTTGGGAACGCTGCCA
AGATTTGCTGGGTCAATTAGCCTGCGTTCCCATTCGCAACTTTTTAGCCT
CGTCCATTCAAGAAGGATGCCTGGTCCTGCGCCTACCCGGGACAGGAGAC
AAATTGTGGTTTGGAGACCgaacggcggggaggaaggagacggtggtGTT
GCGGGTGCAGAGTTGGTGGTTTTTTGTCCGCGTTGCCCTAGAGTACGACC
TCGGGCTAGCGCGTGCCTACATGGCCGGCGAATTCGAAGTCGAGGGGACC
GGGTGGAACAGCGACGGGCTGACCAggctctttctcttgttcATTCGGAA
TCGGGATGCCCCCTCTGGCGGGAAGAGGTTCGCTGTCTCGGCGCTGTTGA
CCTCGTGGATAGGCTACGGCCTGAATTTCCTCCGGTACCGGCTCTCGATG
GACAACTCATTGGCCGGCTCTCGGCAGAACATCTCGGCGCATTACGACAT
TGGGAACGATCTCTACACGCTCATGCTGGACAAGTCACTCATGATGTACT
CGTCGGCCATATATCACCTAGAGctgaccccttcctccctcacggcCTCC
GCTGAGGCTACTTCTTCGGACCTTGTACCCGCCGGAAATGGCAATGGTGT
CGTCGTCaagtcctcctttcctccctcttcctactCTATGGCATTCAAAG
GCTCCTTGGAAGACGCGCAGCTTCGGAAGGTTGATACGTTGATCCGGACA
TGCCGAGTCGAAAGAAAGCATACCTTACTCGACATTGGCTTCGGTTGGGG
CGGGATCGCCATTCGGGCTGCGGAGACGATTGGATGCAAGGTAGTGGGCA
TCACCCTGAGCAAGGAGCAAAAGGCGttggccgaggagaaggtccgGGCG
AAAGGACTCGAGCATTTGATCCATTTTGAGCTGGTCGACTACAGGGTGTT
CGCACGCCGGTAAGTGACAATTACCGAGACAGAGAAAAGCATCGGATccg
aggtggtggcgaaTGTACGCATTTTGGGATGCTGTTGGTGCGTCTCCCAA
GCGCCTGCTCTTTCGCGCATGAAAAGTACTAGAAGGGGATGTCCCACTGG
TGATAGACGGGATGGATGTCATTTTGATGAAGGGTTCAAGTTGCATATTC
GAATTCCTGACAAACACTTGCTCTCAACCTTTTTGAAAGGCATCCCGGCG
AATTCGACCGGATTATTTCATGTGAAATGATCGAAGCTGTCGGGCACAGT
CACCTGGGCGAATATTTTCACGCGGTGGGCAGCCTGCTTAAACCGTCTGG
AGTCTTTgtgatggaggcgatcaCCACGCCTGAAAGCCGGTAGGTGCGAC
gttttttcttgcttttccccttcgtTCCTATATTGGGGCATGGCTAATCA
TTGTGCGTGAATGGTTCAAAAACATCATTTAAGAAATATTGATGTTTCTG
GCCTGACCTGAAGATTACTCGATCTCTTTACCCTCCAAGTTACGTGGACT
ACCTTAAAAGCACCGACTTTATCAATACGATCGTCTTCCCGGGCTCCTGT
TGTCCCTCTCTTACGTCTCTGTTGGAGGCAATGGCCCGGCACAGCGCCCT
CAGTCTGGAGGGTTTAATCAATATCGACGTTCACTACGCCGAGACACTCA
GGGAATGGCGACGTAGGTTCAACCGCGGTCTTCATGCGGTGAAAACTCAG
GGCTTTGATGACGTTTTTGTGCGCTGCTGGAATTACTACCTTTGTTACTG
TGAGGCGGCTTTTGAAAGCAAGACAGAGGGATGTTTGATTTTGACTTTCT
CTCGCCCGGGAAACACCCTCAGCCTCACTGACAACACCCCGTGCCGTGTC
CTCTCCTCTACGTCTCCCTCCGCAACCTTTTTCGCTTCCGAGGTGGTTAC
AAATATGGTGAGCATCGGAACCAGTccgcggaagaaggggtcAAGAGATG
GTGGGAGTGGGCCGTCGACCCCGCAGCGACTGTTGCAATATGCCCGAGAG
AAGTTCACAGTGGGAACGGAATAATAGAAGTGATAAAAGAAGAACCTCAT
GTTCAAGCACTACTGTTCCATGTTTCTCAGCTTGTGGGGGGTATTGAACG
ACAACAGTGGTTGAAAGCTTACATGCAGGTTTTGAGCTTGAGTGAGCTTC
TTATCTATAACAATGTAGAAACTCAGGATCAAATGTGCAGGACATCAGCT
CGGGAGGTCTGAGCTGTTTTTTGGGAGCAATCACACTTCTTACTGGACGA
CAATTGAGACTTTTACAGTTCAGAAACCCTTTCCCGAAAATATGTGTTGG
TCCGTACCGATTTTCATACTAGATgtaagggggaaaaaatgatgaCGCTC
CATAAA

Coding sequence (CDS) from alignment at CM002456.1:1279695..1283950+

>rna1138 ID=rna1138|Name=rna1138|organism=Nannochloropsis gaditana|type=CDS|length=2418bp|location=Sequence derived from alignment at CM002456.1:1279695..1283950+ (Nannochloropsis gaditana)
ATGGGTAACCAAAATAGTGTCTACTTCGGCGCCCCTCCTGTTCGAAAAAA
GGCTCCGCAACATGCGGACATACAAGAAGCTTGGCGGCAGATCGCCTCGA
AGGTCGCCCGCGACAAAGGTTTTGAGCACGGGCGCAAACGTAAAGTGGCC
ATAATAGGATCGGGTGTGGCAGGTTTAGGTGCCGCGTACCATTTGCTGAC
CTGCGCTGCGCCTGGTGAGGAAGTAGAACTGGTAGTATATGAGGCCAGCG
GCACTCCTGGCGGTCATGCACACACGGAGCTAGttcgggaggaagacggc
aaAATAATCGCGTGCGACACAGGCTTCATGGTTTTTAACCATCAAAATTA
CCCGAACTTGGTGGAACTCTTCGCAGAGCTgggcgtggacgacgagAACA
CAAACATGAGCTTCGCGGTCTCCATGGACGAAGGGAAAGTTGAGTGGTGC
TCAGAGTCCGTCAAAACCTTGGCCGGGCCCGTCTATCGAGCCATGCTCAA
GGACATGCTTCGCTTCAATCGCACCGCATCCAACCTTCTCCTAGCCGAAC
CCGAGGACCCGCGCCGGGCGTGGACTTTGGCTGAATTcctcgagaaggag
aaatacGGACCTGAATTCACCAACTACTACATCGTCCCCATGTGCGCCGC
CCTCTGGTCGTCGTCGGCCGCGGACGTCCTGGCTGCCTCAGCCTACGCGC
TTTTGACCTTCATGGACAACCACTGCATGCTCCAGCTTTTCAACCGGCCG
CAATGGAAGACGGTGGCGCAGCGGAGTCAGACCTACGTGCAAAAAATTGT
TGCCCTGCTGGGGGAGCGTCTCCGCTTGAATGCGCCCGtgaagaaggtgg
tggtgcatGGGAAAGGCAAGGTAGAAGTGACGGACGCGAGCTACCACGCC
GAGACCTTTGACGAGGCGATTTTTGCCTGCCATCCCGACCAGTCCCTGGC
gttgctggagggggaggcgcgggtcCGCCTGGCCCCGTACCTGGAGGCCT
TCAAATACGCGCCGAATGCGTGCTACCTGCACAGCGACCCGCGGCTGATG
CCCcgcaagaaggaggcgtggggaagTTGGAACTATATTGGCACGTCGGC
AGGGATGCTCGGGCCGGGTCGGGAGAAGCCTGTTTTTGTGACTTACTGGC
TGAATCAGCTTCAGAACCTTGAAACCGAGACTCCCTACTTCGTCTCCTTg
aaccccctcttcccccccgaccggGCATTGACCCACAAAATCCTCCGGGA
GTCCCACCCGCAATTTACCCCCGCGACGGAAGCGGCCCAACGCAGGATGA
CCGAGGTGCAGGGTCAGGACGGGCTCTGGTTTTGTGGGGCCTGGATGGGC
CATGGCTTTCACGAGGACGGCTTACGGTCAGGCTTGGAGGTGGCGACGGC
CTTGAGCGGTCAAAAGGCAGCCTGGATGCCgcccgaggcggaggctcCCG
TGTACCCGATGGTGAAAGCGCATATGAATGCACGGAGTACTTGGGAACGC
TGCCAAGATTTGCTGGGTCAATTAGCCTGCGTTCCCATTCGCAACTTTTT
AGCCTCGTCCATTCAAGAAGGATGCCTGGTCCTGCGCCTACCCGGGACAG
GAGACAAATTGTGGTTTGGAGACCgaacggcggggaggaaggagacggtg
gtGTTGCGGGTGCAGAGTTGGTGGTTTTTTGTCCGCGTTGCCCTAGAGTA
CGACCTCGGGCTAGCGCGTGCCTACATGGCCGGCGAATTCGAAGTCGAGG
GGACCGGGTGGAACAGCGACGGGCTGACCAggctctttctcttgttcATT
CGGAATCGGGATGCCCCCTCTGGCGGGAAGAGGTTCGCTGTCTCGGCGCT
GTTGACCTCGTGGATAGGCTACGGCCTGAATTTCCTCCGGTACCGGCTCT
CGATGGACAACTCATTGGCCGGCTCTCGGCAGAACATCTCGGCGCATTAC
GACATTGGGAACGATCTCTACACGCTCATGCTGGACAAGTCACTCATGAT
GTACTCGTCGGCCATATATCACCTAGAGctgaccccttcctccctcacgg
cCTCCGCTGAGGCTACTTCTTCGGACCTTGTACCCGCCGGAAATGGCAAT
GGTGTCGTCGTCaagtcctcctttcctccctcttcctactCTATGGCATT
CAAAGGCTCCTTGGAAGACGCGCAGCTTCGGAAGGTTGATACGTTGATCC
GGACATGCCGAGTCGAAAGAAAGCATACCTTACTCGACATTGGCTTCGGT
TGGGGCGGGATCGCCATTCGGGCTGCGGAGACGATTGGATGCAAGGTAGT
GGGCATCACCCTGAGCAAGGAGCAAAAGGCGttggccgaggagaaggtcc
gGGCGAAAGGACTCGAGCATTTGATCCATTTTGAGCTGGTCGACTACAGG
GTGTTCGCACGCCGGTAA

Synonyms

Publications