rna1130, rna1130 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1130
Unique Name	rna1130
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1445
Alignment location	CM002456.1:1263035..1264514 -

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterize protein
Orig transcript id	gnl\|cribi\|Naga_100006g37.8698.mrna
Orig protein id	gnl\|cribi\|Naga_100006g37.8698
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1263035..1264514 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g37	gene1089	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1130	rna1130-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29609.1	cds1129	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1263035..1264514-
coding sequence from alignment at CM002456.1:1263035..1264514-

mRNA sequence

>rna1130 ID=rna1130|Name=rna1130|organism=Nannochloropsis gaditana|type=mRNA|length=1445bp
CCGGATCGGCGAGACCCAGGTCCAAACCCGCCACGGGCCTGTTTTATTCT
GCCTGGCAAAAACCTTGTCGGCGCGCGCGGGTGGAAGCATTTTGTGCCGG
TGCCTGTGTGTCTGTTCTCTGAAATTCATCCCGCGCAGGTCACGTGGAGC
TCTCATGTCGCCTTGTTACTCCTTATATCCGCCTTACTCACATGGCTTTC
CCCATCAACAGCTGGTGGTAGGACAGCAAGGCTTGTTAGTTGAAACACCG
GGCCAGTGCTACCCTCGTTCGTACGATGATTCACGCACGTGGTGTAACTA
TCGTTGCCTTATCCATCCTAGGCATGGCAGCAGGACAGAACTTGCGGTTC
CCGGAGGCTGCCGATGGCCTCCGTCTGCCAGAATCATCTGAAGGCACACT
GCCCGTGTCAAATAATGCGGCGTCCCACCCTCTGATTGGAGCCCCAGCGT
CTGAGAGTAGCCCCGTCAGGTCATCCGCCCCCTCCGTGTCTGTCTCTCCT
TCCCACTTTCCGTCCCCCGTGGTCAGGGACATGGGACTTTACACGTCGGA
CGAAATAGAAGGCACGGTGCGCTTTATCATGCCAAAGTTTAGGGGGCTGC
CAGTGGACTACTGTCTGAGGTACCAGCATGGAAGTGTGCGCCGTGAACGG
CGTGGGATTGATTGCGGCGTCCCCGCGGCCTCTCAATATTGCCGCGACCA
GGGCATGGACGACTCCATCGACTACGTGGTGACATACTACTCGAGTCAGG
CCACCAGCACGCTCGGCGATGGCGCCGTCCATGCCGCTGATCCCACAGGT
GATGGAAAAGGCCGACATACGTGGTTCACTAGCATCACCTGCAGGTTCTC
CGTCGGGGAAGACGTGGCAGTGGCGGAGGCCGGGGGCTGGCCGGTAGAAG
AGATCTCCACCCGGTGGGAGGCTGTGGACGTGAAATCGACGGCGGGCGGC
CGCTCGATGGAAGGACATAGTGACTGACCAGAGTGAGATCGCTGACCTGA
TGGGGATTTTGAGGATTCTAAAGATGGGAGCATAATTTCCAGGCGTGGAT
GGGGTGTGAAAGCGTGAAGGCCCGTGGACAGCGAGAATTTGGTTGGTTTC
TGACAGTCTGATCGAACAAACAACTATTGGGCTGTCGTGTCTGTGCACCA
AGAAGGGTTATACATACGGGAACAGAGAAGACGCGGGTCGTGATGTAGAG
CCTCGCGTTGCAAGGAATGGAAGATGCAGAGAGAATCGGGGAGAAAACTG
ACGAGAAGGGCACTCTGTACATAGTGGAAAAATGTCACGCGGCAGTGAGC
TTTCTTCTGCAAAAGTTAGAGCAGGAAAAAGGAGGATACAAATTTTGAAA
TGAAGCATTTAAAAAAAGGAGGGAGGATAGAGGCTGATATACGGCTACCG
TTGGCAAAAATCATGAACAAATTTCGTAAGGGTTGCCGTCAAAGC

protein sequence of rna1130

>rna1130-protein ID=rna1130-protein|Name=rna1130|organism=Nannochloropsis gaditana|type=polypeptide|length=468bp
MVLSRGFLFDAIVILFIACLCLAPSTANEVFASSSAGLAISSLLNPSRFN
QEYHSAHHIEGKMNSVLAVDVDVAHNAVTKSCSSISNQNRNSESSLSLLS
THPVPLCAPSSSPSALEALLTGSKLMGSMLNKIRGGGAISEARTVNGSGT
CKGALVSTHAKGTVLTLSYFALWFALNVYYNIVNKRVLNALPLPFTVATA
QLGIGAVYVSLSWLLRVRASPQISTTGFKDLLSIAFYHGSGQLFTVLSLG
AAAVSFTHIVKALEPFFSALVAAVCFKQVFKPQVYLSLLPVVSGVAVACA
NDVSFGWLAFLTAMASNLAFALRANFSKGALSRYRKEGKSSMSPANVYGL
VTILAFFLLLPLTCLWEGVDWRPSWRVATEKIEGTTLVHQLLLSGLFHYL
NNEVMYLALDNVHPITLAVGNTAKRVFIIVASLLVFRNPITLTGAVGSGV
GIAGVLIYSLTKQYYDTH

mRNA from alignment at CM002456.1:1263035..1264514-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1130 ID=rna1130|Name=rna1130|organism=Nannochloropsis gaditana|type=mRNA|length=1480bp|location=Sequence derived from alignment at CM002456.1:1263035..1264514- (Nannochloropsis gaditana)
ATGGTATTGTCGCGCGGCTTTTTATTTGACGCCATTGTCATCCTTTTCAT
CGCTTGCCTTTGTCTGGCCCCTTCAACAGGTATGTCTAATGATTCATATC
AAACGAACAGCATAGAATAGTGTCGGCCCCCTCAACTCACTATCATACAC
AGCAAACGAAGTATTTGCTTCTAGCTCAGCAGGCCTTGCTATATCTAGCT
TACTGAACCCATCACGCTTCAATCAAGAATACCACTCGGCCCATCACATT
GAGGGAAAAATGAACTCTGTCCTCGCCGTTGACGTGGATGTCGCGCACAA
CGCGGTCACCAAAAGCTGCTCATCTATTTCAAATCAAAATCGCAATTCCG
AGTCTTCTCTTTCGCTTCTTTCGACCCATCCCGTGCCGCTCTGCGCGCCT
TCTTCGTCTCCTTCTGCTCTCGAGGCCCTGCTCACCGGCAGCAAACTCAT
GGGCAGCATGCTGAACAAAATTCGCGGAGGCGGAGCGATCTCAGAGGCTC
GCACTGTGAATGGGAGCGGGACATGCAAAGGGGCGTTAGTAAGCACTCAT
GCGAAAGGCACCGTCCTTACACTCAGTTATTTTGCCTTGTGGTTCGCACT
GAACGTCTACTACAACATTGTAAACAAGCGAGTTCTCAATGCTCTCCCTC
TACCTTTCACGGTTGCAACGGCTCAGCTGGGTATTGGTGCTGTCTACGTC
TCCCTATCTTGGCTTCTTCGCGTCCGTGCTTCCCCCCAAATCAGCACGAC
CGGCTTCAAGGACCTCCTCTCCATCGCTTTCTACCATGGCTCCGGCCAAC
TGTTCACAGTACTGAGTCTTGGCGCCGCCGCAGTCAGCTTCACGCATATA
GTTAAGGCTCTGGAGCCTTTTTTCTCTGCCCTTGTCGCTGCTGTGTGCTT
CAAGCAGGTTTTCAAACCTCAAGTCTACTTGAGCCTCCTCCCAGTCGTGT
CAGGGGTGGCAGTTGCGTGTGCCAATGACGTGTCTTTTGGGTGGCTTGCG
TTCTTGACGGCCATGGCTTCCAATCTGGCCTTTGCTCTGCGTGCCAACTT
TTCCAAAGGCGCGCTGTCCCGCTACCGGAAAGAAGGGAAGAGCAGCATGT
CGCCCGCGAACGTCTATGGTCTCGTGACCATCCTCGCGTTTTTCCTCCTC
CTTCCCCTGACGTGTCTGTGGGAAGGGGTCGACTGGCGGCCATCATGGCG
TGTAGCGACCGAAAAAATAGAAGGCACCACCCTTGTTCACCAATTGCTCC
TGAGTGGCCTTTTCCATTACCTGAACAACGAGGTCATGTACTTGGCCCTG
GATAACGTGCACCCCATCACCTTGGCCGTGGGCAACACCGCCAAGCGCGT
CTTCATTATAGTGGCGAGCCTTTTGGTCTTTCGGAACCCGATAACGCTGA
CAGGGGCGGTGGGCTCGGGAGTAGGCATAGCGGGGGTGCTGATATACAGC
CTGACTAAACAGTATTATGACACGCATTAA

Coding sequence (CDS) from alignment at CM002456.1:1263035..1264514-

>rna1130 ID=rna1130|Name=rna1130|organism=Nannochloropsis gaditana|type=CDS|length=2814bp|location=Sequence derived from alignment at CM002456.1:1263035..1264514- (Nannochloropsis gaditana)
CAAACGAAGTATTTGCTTCTAGCTCAGCAGGCCTTGCTATATCTAGCTTA
CTGAACCCATCACGCTTCAATCAAGAATACCACTCGGCCCATCACATTGA
GGGAAAAATGAACTCTGTCCTCGCCGTTGACGTGGATGTCGCGCACAACG
CGGTCACCAAAAGCTGCTCATCTATTTCAAATCAAAATCGCAATTCCGAG
TCTTCTCTTTCGCTTCTTTCGACCCATCCCGTGCCGCTCTGCGCGCCTTC
TTCGTCTCCTTCTGCTCTCGAGGCCCTGCTCACCGGCAGCAAACTCATGG
GCAGCATGCTGAACAAAATTCGCGGAGGCGGAGCGATCTCAGAGGCTCGC
ACTGTGAATGGGAGCGGGACATGCAAAGGGGCGTTAGTAAGCACTCATGC
GAAAGGCACCGTCCTTACACTCAGTTATTTTGCCTTGTGGTTCGCACTGA
ACGTCTACTACAACATTGTAAACAAGCGAGTTCTCAATGCTCTCCCTCTA
CCTTTCACGGTTGCAACGGCTCAGCTGGGTATTGGTGCTGTCTACGTCTC
CCTATCTTGGCTTCTTCGCGTCCGTGCTTCCCCCCAAATCAGCACGACCG
GCTTCAAGGACCTCCTCTCCATCGCTTTCTACCATGGCTCCGGCCAACTG
TTCACAGTACTGAGTCTTGGCGCCGCCGCAGTCAGCTTCACGCATATAGT
TAAGGCTCTGGAGCCTTTTTTCTCTGCCCTTGTCGCTGCTGTGTGCTTCA
AGCAGGTTTTCAAACCTCAAGTCTACTTGAGCCTCCTCCCAGTCGTGTCA
GGGGTGGCAGTTGCGTGTGCCAATGACGTGTCTTTTGGGTGGCTTGCGTT
CTTGACGGCCATGGCTTCCAATCTGGCCTTTGCTCTGCGTGCCAACTTTT
CCAAAGGCGCGCTGTCCCGCTACCGGAAAGAAGGGAAGAGCAGCATGTCG
CCCGCGAACGTCTATGGTCTCGTGACCATCCTCGCGTTTTTCCTCCTCCT
TCCCCTGACGTGTCTGTGGGAAGGGGTCGACTGGCGGCCATCATGGCGTG
TAGCGACCGAAAAAATAGAAGGCACCACCCTTGTTCACCAATTGCTCCTG
AGTGGCCTTTTCCATTACCTGAACAACGAGGTCATGTACTTGGCCCTGGA
TAACGTGCACCCCATCACCTTGGCCGTGGGCAACACCGCCAAGCGCGTCT
TCATTATAGTGGCGAGCCTTTTGGTCTTTCGGAACCCGATAACGCTGACA
GGGGCGGTGGGCTCGGGAGTAGGCATAGCGGGGGTGCTGATATACAGCCT
GACTAAACAGTATTATGACACGCATTAAATGGTATTGTCGCGCGGCTTTT
TATTTGACGCCATTGTCATCCTTTTCATCGCTTGCCTTTGTCTGGCCCCT
TCAACAGCAAACGAAGTATTTGCTTCTAGCTCAGCAGGCCTTGCTATATC
TAGCTTACTGAACCCATCACGCTTCAATCAAGAATACCACTCGGCCCATC
ACATTGAGGGAAAAATGAACTCTGTCCTCGCCGTTGACGTGGATGTCGCG
CACAACGCGGTCACCAAAAGCTGCTCATCTATTTCAAATCAAAATCGCAA
TTCCGAGTCTTCTCTTTCGCTTCTTTCGACCCATCCCGTGCCGCTCTGCG
CGCCTTCTTCGTCTCCTTCTGCTCTCGAGGCCCTGCTCACCGGCAGCAAA
CTCATGGGCAGCATGCTGAACAAAATTCGCGGAGGCGGAGCGATCTCAGA
GGCTCGCACTGTGAATGGGAGCGGGACATGCAAAGGGGCGTTAGTAAGCA
CTCATGCGAAAGGCACCGTCCTTACACTCAGTTATTTTGCCTTGTGGTTC
GCACTGAACGTCTACTACAACATTGTAAACAAGCGAGTTCTCAATGCTCT
CCCTCTACCTTTCACGGTTGCAACGGCTCAGCTGGGTATTGGTGCTGTCT
ACGTCTCCCTATCTTGGCTTCTTCGCGTCCGTGCTTCCCCCCAAATCAGC
ACGACCGGCTTCAAGGACCTCCTCTCCATCGCTTTCTACCATGGCTCCGG
CCAACTGTTCACAGTACTGAGTCTTGGCGCCGCCGCAGTCAGCTTCACGC
ATATAGTTAAGGCTCTGGAGCCTTTTTTCTCTGCCCTTGTCGCTGCTGTG
TGCTTCAAGCAGGTTTTCAAACCTCAAGTCTACTTGAGCCTCCTCCCAGT
CGTGTCAGGGGTGGCAGTTGCGTGTGCCAATGACGTGTCTTTTGGGTGGC
TTGCGTTCTTGACGGCCATGGCTTCCAATCTGGCCTTTGCTCTGCGTGCC
AACTTTTCCAAAGGCGCGCTGTCCCGCTACCGGAAAGAAGGGAAGAGCAG
CATGTCGCCCGCGAACGTCTATGGTCTCGTGACCATCCTCGCGTTTTTCC
TCCTCCTTCCCCTGACGTGTCTGTGGGAAGGGGTCGACTGGCGGCCATCA
TGGCGTGTAGCGACCGAAAAAATAGAAGGCACCACCCTTGTTCACCAATT
GCTCCTGAGTGGCCTTTTCCATTACCTGAACAACGAGGTCATGTACTTGG
CCCTGGATAACGTGCACCCCATCACCTTGGCCGTGGGCAACACCGCCAAG
CGCGTCTTCATTATAGTGGCGAGCCTTTTGGTCTTTCGGAACCCGATAAC
GCTGACAGGGGCGGTGGGCTCGGGAGTAGGCATAGCGGGGGTGCTGATAT
ACAGCCTGACTAAACAGTATTATGACACGCATTAAATGGTATTGTCGCGC
GGCTTTTTATTTGACGCCATTGTCATCCTTTTCATCGCTTGCCTTTGTCT
GGCCCCTTCAACAG

Synonyms

Publications