rna1116, rna1116 (mRNA) Nannochloropsis gaditana

Overview
Namerna1116
Unique Namerna1116
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1315
Alignment locationCM002456.1:1222904..1224112 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g51.8683.mrna
Orig protein idgnl|cribi|Naga_100006g51.8683
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1222904..1224112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g51gene1075Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1116rna1116-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29594.1cds1115Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1116 ID=rna1116|Name=rna1116|organism=Nannochloropsis gaditana|type=mRNA|length=1315bp
TGAAAAAGCGATCAGTGAGTATAACAACGCAGATTCGGAAAACTAGATGC
TCTCAATGTCCTACTTGTCGGCTTTATCACGCTGGAAAGACATTTATCTT
CACAATTGCGAAGCATTTAAAGTATGTTAACTCCAATATTGAGCGCTGAC
GTACGCGTGACCGCCTCCTGCCTTTCTGGAGACACACAAGCTATCCCCCT
GGGATGAAGGGCAATATTTCCACACGATCACCCATCCACCCGCAGAACGG
CAAAGAGACTTATGGCACACATGGAAAAAACAGATCGGCCAATGAACAAG
CTCAAGAAGGACGAGACTACGACAGGGCCAAGTCCAGTTAGCGTCACGCG
GACCATCTCGTCCCCGGCCCGAAAATACCGTGCGAAACCCCTGTCCAAGC
AGGATGTGATTAGCAATGAGTCTTTACACTTTTGGCGGAAGAAATATGAG
GACATGATCCACTACGTGCGGGAGTCAGGCGTCTCCGTTGAAGACGCCGA
CGACGATGAGGTGATACGCTTGCTGGCTGAATGGAATGGGAACGTCAAGG
ACGCGGTATTAAACGGAGAGAAAGGAAGGGCATGGAGGAAGGAAAACTTA
CCCATTCCACGTGCGGAGGTCCTTCCCACGCTGAAAACTGGCAAGTTTGT
TTTTGCCGGCTACGACAAAGTTGGTCGGGCCATCTGCTACTATCGCGTCA
AGTTCCACAACCCTCGTCAGTTCGCGCCGCTGCAATCCGTCAAAGCTGTG
GTCTATCTCTACGAAGAGATGCGGGCGGAAGGCAGGCTGCGGGGGGCGGA
AGAGATTTGCGTCGTGGTGGACCGGACCGATGCCAAGAGCGCGAATATGG
ACATCGAGTTCATGAAGCTCCTGTACACCATGCTCAAAGAGTCCTATCCC
GCCCGAGGAGAGCTCTTCCTTGTGCTTGGAGTCAACTTCATCTTCCGTAA
AATTTGGGAGAACCTTGTCTCGGTGTTCTTAGACGCCAAAAGTCGATCCG
CTACACACCTGTTGAAGGACAAGAAGGAGCTGCTTGACTTTATCGAAGAA
GGGGAATTGGTAGAGTGGTTGGGTGGAAAACTTCCGTACACCTTTGTGCC
ACCATTAGATGAATAACGCTTCGATCCGACGTGGACATTTTGCGGAAGCG
TGCGTGTCATGCCCGGGTACGCATCTCGGTAGCAAGCTGCATAGCACATG
AAAAGGTGTAAGGGTCGTGAAAGTCAGCGCGTTTGATTCATCTCACGAAA
TACAACAAAATTAAGTTCTTTTAATCTCAGTGAAACCAAGGTATTGTTCC
GTTTGGTAGCTTTTA
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protein sequence of rna1116

>rna1116-protein ID=rna1116-protein|Name=rna1116|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MAKSTSATSTWSQALPPQYALLLGNLLVLANFIAALLVPWVEARYKVFDA
WFPVYMPVKIGLLKCFGDMCSALYGETGQQQKGQGKGNDRPPIPGWGPTG
GGGGSPINDSGGGAKALFEIAAIFAIIFLSVSVLVAMGGALVEAARVQGR
RDISGLFPLQLSGASALICSVALLQYLFITLAGLHGGRYEVGFWLTLATA
AAVGVLTTGQYLISKKFFDEEYTDGNGGKSFFLPSHLGRGERSNSPSGQL
HKLREETTGCAKGCCGGGGGEGGGEASHALNRPSYGAV
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mRNA from alignment at CM002456.1:1222904..1224112+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1116 ID=rna1116|Name=rna1116|organism=Nannochloropsis gaditana|type=mRNA|length=1209bp|location=Sequence derived from alignment at CM002456.1:1222904..1224112+ (Nannochloropsis gaditana)
AGAAGACCTTCGTTAAGTACTACTAATCGTTACCGGGGAAATCGCTTGAC
AGACAAAAGAAAAGCCGCCACCGGTTGCTGTCACGCGTCGAACGTGCTGC
CACCAGACACTTTAGTGTCGCGTAGCGTACGGGAGTAGTCTGAGGGGTCA
ATCGTCGACACAAGGGGAATAAGAAAAGAGGACATCGTTCGGGACGTGAT
CTCTCGGAGAGTACTCACAaaccttttcccccttcatcTACAGGGCTCTC
TAAAGCATGGCAAAATCGACTTCGGCAACCAGCACGTGGTCGCAGGCTCT
GCCTCCACAGTACGCATTGCTTCTGGGAAATTTGTTGGTACTTGCGAACT
TTatcgctgccctccttgtacCCTGGGTCGAGGCACGATACAAGGTATTT
GATGCATGGTTCCCTGTATACATGCCAGTGAAAATTGGCCTCCTTAAATG
TTTTGGTGACATGTGTTCAGCATTATACGGTGAGACGGGTCAACAACAAA
AGGGTCAGGGCAAAGGAAACGACAGACCACCCATTCCAGGCTGGGGCccg
acgggaggaggcggaggatcACCAATAAACGACAGCGGTGGAGGTGCCAA
AGCTCTTTTTGAGATAGCTGCTATATTCGCAATAATCTTTCTCAGCGTCT
CTGTGCTTGTGGCTATGGGTGGGGCCTTGGTGGAAGCTGCCCGTGTTCAA
GGCCGTCGAGACATCAGTGGCCTCTTTCCTTTGCAGCTATCGGGTGCTTC
GGCGCTCATTTGTTCGGTGGCTTTGCTCCAATATCTTTTTATTACTTTGG
CCGGCTTGCATGGTGGCCGTTACGAGGTGGGCTTTTGGTTAACACTTGCC
ACAGCCGCGGCGGTCGGTGTATTGACCACTGGGCAATATTTGATAAGTAA
GAAATTTTTTGATGAGGAGTACACGGACGGAAACGGCGGGAAAAGCTTCT
TTTTGCCGTCGCAtctagggagaggggaaaggtcCAACAGTCCAAGCGGG
CAGCTGCACAAATTGAGAGAAGAAACTACGGGCTGTGCAAAAGGTtgctg
tggaggagggggaggggaagggggaggggaagccagTCATGCCCTGAATC
GGCCGAGCTATGGTGCAGTTTGAATTCAAACAGCGTAGAGCTTAACTGAG
AGTTGCAGGCGGATTGGAAAGAAATCCATACCTGAAGAGCATGAGGTATG
CTACATCGA
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Coding sequence (CDS) from alignment at CM002456.1:1222904..1224112+

>rna1116 ID=rna1116|Name=rna1116|organism=Nannochloropsis gaditana|type=CDS|length=867bp|location=Sequence derived from alignment at CM002456.1:1222904..1224112+ (Nannochloropsis gaditana)
ATGGCAAAATCGACTTCGGCAACCAGCACGTGGTCGCAGGCTCTGCCTCC
ACAGTACGCATTGCTTCTGGGAAATTTGTTGGTACTTGCGAACTTTatcg
ctgccctccttgtacCCTGGGTCGAGGCACGATACAAGGTATTTGATGCA
TGGTTCCCTGTATACATGCCAGTGAAAATTGGCCTCCTTAAATGTTTTGG
TGACATGTGTTCAGCATTATACGGTGAGACGGGTCAACAACAAAAGGGTC
AGGGCAAAGGAAACGACAGACCACCCATTCCAGGCTGGGGCccgacggga
ggaggcggaggatcACCAATAAACGACAGCGGTGGAGGTGCCAAAGCTCT
TTTTGAGATAGCTGCTATATTCGCAATAATCTTTCTCAGCGTCTCTGTGC
TTGTGGCTATGGGTGGGGCCTTGGTGGAAGCTGCCCGTGTTCAAGGCCGT
CGAGACATCAGTGGCCTCTTTCCTTTGCAGCTATCGGGTGCTTCGGCGCT
CATTTGTTCGGTGGCTTTGCTCCAATATCTTTTTATTACTTTGGCCGGCT
TGCATGGTGGCCGTTACGAGGTGGGCTTTTGGTTAACACTTGCCACAGCC
GCGGCGGTCGGTGTATTGACCACTGGGCAATATTTGATAAGTAAGAAATT
TTTTGATGAGGAGTACACGGACGGAAACGGCGGGAAAAGCTTCTTTTTGC
CGTCGCAtctagggagaggggaaaggtcCAACAGTCCAAGCGGGCAGCTG
CACAAATTGAGAGAAGAAACTACGGGCTGTGCAAAAGGTtgctgtggagg
agggggaggggaagggggaggggaagccagTCATGCCCTGAATCGGCCGA
GCTATGGTGCAGTTTGA
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Synonyms
Publications