rna1113, rna1113 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1113
Unique Name	rna1113
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2522
Alignment location	CM002456.1:1216893..1219261 +

Link to JBrowse

Properties


Property Name	Value
Product	alcohol acetyltransferase
Orig transcript id	gnl\|cribi\|Naga_100006g54.8624.mrna
Orig protein id	gnl\|cribi\|Naga_100006g54.8624
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1216893..1219261 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g54	gene1072	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1113	rna1113-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29535.1	cds1112	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1216893..1219261+
coding sequence from alignment at CM002456.1:1216893..1219261+

mRNA sequence

>rna1113 ID=rna1113|Name=rna1113|organism=Nannochloropsis gaditana|type=mRNA|length=2522bp
TTATATTTGAACCCTGAGCCACTGCGCGAACGGAAAAGACCAGGCAGGCT
CCCCATTCCTGTGACGAGGTAAAGCATATCAGGTCACTTGAAGTCTCACT
TCCCGCACCCTGGCCGGTCTGAGCGAGTGGACCTGCATTTGCAAGTGCCG
CGTGCGCAACCCTTTACTGGTCAATTCATGGTACCAATGCTTCGATCGGA
CATTTTTGATGGCTGTCACAACCTTTTTGAGTTTGAATGTCTTTCGTTTG
GTACGGAATTTGAAGTAATGTGACACTTTCCGGGCTTCCCCTTGCTCTTT
GCCAGCCAGTCTTCAACGCGCAACTTGTTGAACGACCGACTTCAACCGCC
TCCCCTCCCATGACATGAAATATGTCACAAGCACAAAGCTTTCACACTAA
TCCCACTAATCCCCATTGCCAGACGATATGACGCCTGCTACTTTCAGCTT
ACTACCAGCTGAGTGTCACGACCAAATTCTGAGTTTTTTACGCTATAAAG
ATCTGGTGCGAGTGTCCATGACAAACGTAGACGCATGGTTGGCGTACTTT
CGAGTGCAAGGCCGACTTGAAAGCATACGGGTTGAGAATATGGCGGGGAA
ACGCAAGCGCCGGGCCCTCTTCTCCCAGCTACGCGCGACCACTGGGCTGA
AGACCTTGAGCCTTGTCAACGTCCCACACCCTTGCACAGGCGTGCTCTTC
CAGCAGGTCAGCTGCATGCACGGCCTTCAAGAGCTCGACCTCTCGAGTAA
TGGCCTCAAGGGCCCCTTACCCCGGTGGTTGAGCAAACACCTTCCCCTCC
TACGCCGCCTCTCTCTCAGCAATAACCAGCTGAGTGGAAGCCTACCGGTG
GAATGGGGAGCCTTTTCTCGTCTGGAAGACCTAAAACTCTCCTTCAATCG
CCTTGAGGGCAACGTCCCAGAGACATGGGCCGGAATGCGGTCTCTACGCC
TGCTTTCCCTCTCCTACAACCAGCTCTCGGGGCCCGTCCCCTCCTTTTTT
TCCTCCCTGCCCGCCTTGGAAGCGCTCATGCTGGGAGGAAACAAATTCAA
CGGCTCCCTTCCCGCGTCCCTGGGAGCTCTCAGCCACATCCATGCCCTCT
ACCTCTTTCAAAACGAGCTGGAAGGGCCCATACCTGAGGCGTTGGGCTCC
TGCCTCGCCCTACAAATACTCCTCCTCTCGCACAACCGATTCACAGGGCC
CCTCCCTCCCTTTCTAGGGGGGCTTCGGCAGTTGGAGGAACTGAGCGTGA
GCGCTAATAAACTTGAGGGCGAGCTCCCGTATGACCTGAAGAAACTCGAA
CATTTGCACGTGTTGGACCTAGCCGACAATCGATTTGCAGCGGACGCCCC
GCGCTCCCGGAACGTGCTCGAGGCGATGCGCCTGCGCGATTGTCAAGTGT
ACATGTAGGAGCTCGTGGTCATGTCGGACGCTTCCCACAGGCTCGGCGCC
TGTATTGCCTCCGTAAAAACCGCGTTCAAGGTAAAAGTTCTCATTTCCTC
GAGGTTTAGGGTACTGGCTGCACTTGTGTTGTAAGAACTCGCATATCTCC
ATCAAGAATGTGGGAGGAGCGTCGCTGACCCGAGCTCTTTTCATAGCGAG
CGTGCGTGACGCAGGAATAGTCCTTTGTCGTAATTAGGTACAGCAAGCGC
ACGCGAAACCAGGAATATTCTCTTGTTATTTTAATTGCAGTGAAGTACAA
ATGTGTGCGGGAGATGGAATTATGAAGTATTGCTTGAGGGAATGTCGTCG
AATTTGAGAAATTCCACGAGAGCCCTTTCGAAGGTGTAGGAGGCGAGAGT
CCGGGCAAGAGAACATGTTGCTGGAAAGCAATAATGTATTGATCTTATCC
AGGGTAGAAAATCTTCAAATTATGCGCAGAGATCGAACAGGAGGTCCGGT
AGTCAAGGGCGGGAATGCATGGCAAAAGAATGTGGTATGGAAACGACGAG
GACCGGGTATTAAAGAGAAAATTTTGGGAAAGTGATTGCATAAATAGACT
GAACGGTTGTGCCGGCAAGAGGTCGGTACCACAATGCGCGTATTCGGGGC
GTGAACTTCGCACGTTGGGAAGATGAACGCTTTGGGATCGGCCAGCAGCT
GGGCCACTGGACGACATGGAAGCCCCAGGCAGTCTCTCGCATACAAAGAG
AGGAGGTTGGCTGAGGAGCACCGGGAATGGGCAGGAATCCTGGCTTATCT
TTAGCGTTGTGGAGGATAAACTAAAATTTCCAGGGGCAGACCTAGCGTGT
GTTCACAGAAAAAGAGGGTCAGATAGGCATGGATCCTATTCATAGAAATG
AATGAATTGAAATATTGAAAGCAAGAAGATCCTGGTCGACACAGTCATTT
GCTTTTCGATATTCTTCGAGTTAAGAAAAAGTAAAGAAAGGGCACTGCCG
TAAGCCAATTAGCTTCATAAATTGGTACATTGTCTTTCTCATCCTCAGCC
GCCGTATCAGCATGGCCCTCGCAAATCCTACATGATCGTGCCTATCAGAC
TATGAATCTCCGTCTATGCATG

protein sequence of rna1113

>rna1113-protein ID=rna1113-protein|Name=rna1113|organism=Nannochloropsis gaditana|type=polypeptide|length=630bp
MTGTGHTEDGHEWHDAREEEFATVPSWALSSPHPLNELRQRKNPDASDKS
VPLPPATPETSSTWSSWLSSSSPTQSSAVKRDWSIEARRRLGGFETFFRT
TVPYGLGCIYYIVDFEGPPDTDLLAEAMRFQVKQHPNLRSRLHGDYLEAV
AFEDCPQIVVPYIESEDVVGYTERAMKAAKELKAGRDPYLWQLALHHTPS
SESHHLLFLIHHAISDGDSILRCLQSLMEGMASLSPLSPHERERKLAQVK
ALPQLASADEQLYPQYNGYYLVYHFRTLFRELWRVVLRPRLPRPCQMTLT
EAPRVTRCLSFVLDAPDFKRLLKTCKANQTSVTGALVAATSQAMEGFIEG
PPSSFKMKVEVLVNFRGKASATLGSKDSHQLYAAPMDMLLPAGNKAETRL
EFWRTAREAKREIDAFATEPHRIVDALEFFYIMGHHPIAMPLIRLFGASP
RQGRQKALSISNLGSTDKLFQPAGPWRLGRMQMGIDELLFGHSVFLAMAS
HEGRLNFSLSYIEPIVSKAMAENYSQAVIRALIDACPPASEDAPPTPQTP
VSRILKSKSRVFVDYLWSSTLKRSEEVLNMHAYGTLWRSSIYEIKDQQEK
QSKSNSLWKAQRKLHSSKSHLQYRHVACAS

mRNA from alignment at CM002456.1:1216893..1219261+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1113 ID=rna1113|Name=rna1113|organism=Nannochloropsis gaditana|type=mRNA|length=2369bp|location=Sequence derived from alignment at CM002456.1:1216893..1219261+ (Nannochloropsis gaditana)
ATGACTGGTACTGGACATACGGAGGACGGACACGAATGGCATGACGCTCG
GGAAGAAGAGTTTGCAACCGTTCCATCTTGggctttgtcctcccctcacc
cttTGAACGAGCTTCGTCAGAGGAAGAACCCCGACGCCTCCGACAAAAGT
GTACCTTTGCCCCCCGCAACGCCTGAGACGTCGTCAACGTGGTCTTCATg
gctttcgtcctcctccccaacgCAGTCTTCAGCCGTGAAAAGGGACTGGT
CAATCGAGGCTCGCCGCCGCTTAGGGGGATTCGAAACGTTTTTCCGCACA
ACTGTACCGTATGGATTGGGGTGCATCTATTATATTGTGGACTTTGAAGG
CCCTCCGGACACAGACCTCCTGGCTGAAGCCATGCGTTTCCAAGTCAAAC
AGCACCCTAACCTCCGCTCTCGTCTGCATGGAGACTATTTGGAAGCCGTT
GCCTTCGAAGATTGTCCTCAAATAGTCGTCCCGTACATCGAATCAGAGGA
CGTAGTGGGGTACACAGAGCGGGCCATGAAGGCAGCGAAGGAGCTGAAGG
CTGGTCGCGACCCGTACTTGTGGCAGCTGGCTTTGCACCACACGCCCTCG
TCCGAgtcccaccacctcctcttcctcatccatcaTGCCATCTCCGACGG
CGACTCcatcctccgctgcctccagTCTTTGATGGAGGGcatggcctccc
tctctccattgTCACCTCACGAGCGCGAACGGAAGCTTGCACAGGTAAAG
GCCTTGCCACAGCTAGCCAGCGCCGATGAGCAGCTATACCCCCAATATAA
TGGGTACTACCTGGTCTACCATTTCCGGACGTTGTTTCGTGAACTGTGGC
GTGTAGTGCTTcggcctcgccttcctcgtccttgccaAATGACCTTGACA
GAGGCACCGCGAGTGACCCGttgcctctccttcgtcttggACGCCCCCGA
CTTCAAACGCTTGCTGAAAACGTGCAAAGCCAACCAGACTTCTGTGACGG
GAGCATTGGTAGCAGCGACCTCGCAGGCGATGGAAGGCTTTATCGAGggg
ccaccctcttctttcaaaatgaaggtggaggtgctAGTCAATTTTCGCGG
CAAGGCAAGTGCCACGTTGGGTTCCAAGGATTCCCACCAGCTCTACGCGG
CCCCCATGGACATGCTACTGCCGGCGGGGAACAAGGCTGAGACCAGACTT
GAATTTTGGCGGACCGCCCGGGAGGCCAAGCGCGAGATCGACGCCTTCGC
TACGGAACCCCATCGGATCGTGGACGCTTTGGAGTTCTTCTACATCATGG
GCCACCATCCCATTGCCATGCCGCTGATCCGCCTGTTCGGTGCCTCTCCA
CGGCAAGGCCGGCAAAAGGCCCTCTCAATCTCCAACCTGGGGTCCACGGA
CAAGCTTTTCCAGCCGGCAGGGCCCTGGCGCTTGGGCCGGATGCAGATGG
GTATTGACGAGCTTCTCTTCGGTCACAGCGTCTTCTTGGCCATGGCTTCG
CACGAGGGACGGTTGAATTTCAGCCTGTCCTACATCGAACCCATCGTCtc
caaggccatggccgaGAATTACTCGCAAGCAGTTATCCGCGCCCTGATCG
ACGCCTGCCCTCCGGCCAGCGAAGACGCGCCTCCGACTCCTCAGACGCCG
GTGTCCATCACGGCCAAGCCCTCTATCTCCGTTCCTTCCGCCCAGCCGTC
CACTCCGTCAACGCTCCAAAGGGGcctgagagaaggagagaggctgGTCA
GTGGTgctgggaggacggggatggGCGGGATCGCGTCCCCGATAGGGGGC
GGTACCGCATCAGctacaggaggaggaggtgggggtgggcTGATCTCTGG
TGGGGGCGCGGGAGAGGTAGGGGTTGCGAGTCCTgcggcaggagggggtg
catcctcctccttgtcgtcggGCAGATCCAACGTGCATCGCATGGCCGCA
GGATCGTAATAACACTTGATACGCGGAGAAAGCACTCTAAAAAGAGAAGT
GTGACTGGGATAGCGAAGGAAAGATACGAGCCAGGAAAGGCCTTAGATGA
ATAGAGGAACATTTACGTGCAAGCAAAGCCGAACCTGTTGTGTGCGCAAT
ACATATGATGGCTCTGCATTCTCACTAGCTCTCGAATCCTGAAAAGTAAA
TCGCGTGTTTTCGTTGATTACCTTTGGTCCAGCACACTGAAAAGGTCGGA
AGAAGTCCTCAACATGCATGCTTATGGGACTCTTTGGAGGTCAAGTATTT
ATGAGATCAAAGATCAACAGGAAAAGCAATCAAAATCAAATTCTCTATGG
AAGGCGCAAAGAAAACTGCACTCGTCCAAAAGCCACCTACAATACAGACA
TGTCGCCTGTGCATCATGA

Coding sequence (CDS) from alignment at CM002456.1:1216893..1219261+

>rna1113 ID=rna1113|Name=rna1113|organism=Nannochloropsis gaditana|type=CDS|length=3786bp|location=Sequence derived from alignment at CM002456.1:1216893..1219261+ (Nannochloropsis gaditana)
ATGACTGGTACTGGACATACGGAGGACGGACACGAATGGCATGACGCTCG
GGAAGAAGAGTTTGCAACCGTTCCATCTTGggctttgtcctcccctcacc
cttTGAACGAGCTTCGTCAGAGGAAGAACCCCGACGCCTCCGACAAAAGT
GTACCTTTGCCCCCCGCAACGCCTGAGACGTCGTCAACGTGGTCTTCATg
gctttcgtcctcctccccaacgCAGTCTTCAGCCGTGAAAAGGGACTGGT
CAATCGAGGCTCGCCGCCGCTTAGGGGGATTCGAAACGTTTTTCCGCACA
ACTGTACCGTATGGATTGGGGTGCATCTATTATATTGTGGACTTTGAAGG
CCCTCCGGACACAGACCTCCTGGCTGAAGCCATGCGTTTCCAAGTCAAAC
AGCACCCTAACCTCCGCTCTCGTCTGCATGGAGACTATTTGGAAGCCGTT
GCCTTCGAAGATTGTCCTCAAATAGTCGTCCCGTACATCGAATCAGAGGA
CGTAGTGGGGTACACAGAGCGGGCCATGAAGGCAGCGAAGGAGCTGAAGG
CTGGTCGCGACCCGTACTTGTGGCAGCTGGCTTTGCACCACACGCCCTCG
TCCGAgtcccaccacctcctcttcctcatccatcaTGCCATCTCCGACGG
CGACTCcatcctccgctgcctccagTCTTTGATGGAGGGcatggcctccc
tctctccattgTCACCTCACGAGCGCGAACGGAAGCTTGCACAGGTAAAG
GCCTTGCCACAGCTAGCCAGCGCCGATGAGCAGCTATACCCCCAATATAA
TGGGTACTACCTGGTCTACCATTTCCGGACGTTGTTTCGTGAACTGTGGC
GTGTAGTGCTTcggcctcgccttcctcgtccttgccaAATGACCTTGACA
GAGGCACCGCGAGTGACCCGttgcctctccttcgtcttggACGCCCCCGA
CTTCAAACGCTTGCTGAAAACGTGCAAAGCCAACCAGACTTCTGTGACGG
GAGCATTGGTAGCAGCGACCTCGCAGGCGATGGAAGGCTTTATCGAGggg
ccaccctcttctttcaaaatgaaggtggaggtgctAGTCAATTTTCGCGG
CAAGGCAAGTGCCACGTTGGGTTCCAAGGATTCCCACCAGCTCTACGCGG
CCCCCATGGACATGCTACTGCCGGCGGGGAACAAGGCTGAGACCAGACTT
GAATTTTGGCGGACCGCCCGGGAGGCCAAGCGCGAGATCGACGCCTTCGC
TACGGAACCCCATCGGATCGTGGACGCTTTGGAGTTCTTCTACATCATGG
GCCACCATCCCATTGCCATGCCGCTGATCCGCCTGTTCGGTGCCTCTCCA
CGGCAAGGCCGGCAAAAGGCCCTCTCAATCTCCAACCTGGGGTCCACGGA
CAAGCTTTTCCAGCCGGCAGGGCCCTGGCGCTTGGGCCGGATGCAGATGG
GTATTGACGAGCTTCTCTTCGGTCACAGCGTCTTCTTGGCCATGGCTTCG
CACGAGGGACGGTTGAATTTCAGCCTGTCCTACATCGAACCCATCGTCtc
caaggccatggccgaGAATTACTCGCAAGCAGTTATCCGCGCCCTGATCG
ACGCCTGCCCTCCGGCCAGCGAAGACGCGCCTCCGACTCCTCAGACGCCG
GTCTCTCGAATCCTGAAAAGTAAATCGCGTGTTTTCGTTGATTACCTTTG
GTCCAGCACACTGAAAAGGTCGGAAGAAGTCCTCAACATGCATGCTTATG
GGACTCTTTGGAGGTCAAGTATTTATGAGATCAAAGATCAACAGGAAAAG
CAATCAAAATCAAATTCTCTATGGAAGGCGCAAAGAAAACTGCACTCGTC
CAAAAGCCACCTACAATACAGACATGTCGCCTGTGCATCATGAATGACTG
GTACTGGACATACGGAGGACGGACACGAATGGCATGACGCTCGGGAAGAA
GAGTTTGCAACCGTTCCATCTTGggctttgtcctcccctcacccttTGAA
CGAGCTTCGTCAGAGGAAGAACCCCGACGCCTCCGACAAAAGTGTACCTT
TGCCCCCCGCAACGCCTGAGACGTCGTCAACGTGGTCTTCATggctttcg
tcctcctccccaacgCAGTCTTCAGCCGTGAAAAGGGACTGGTCAATCGA
GGCTCGCCGCCGCTTAGGGGGATTCGAAACGTTTTTCCGCACAACTGTAC
CGTATGGATTGGGGTGCATCTATTATATTGTGGACTTTGAAGGCCCTCCG
GACACAGACCTCCTGGCTGAAGCCATGCGTTTCCAAGTCAAACAGCACCC
TAACCTCCGCTCTCGTCTGCATGGAGACTATTTGGAAGCCGTTGCCTTCG
AAGATTGTCCTCAAATAGTCGTCCCGTACATCGAATCAGAGGACGTAGTG
GGGTACACAGAGCGGGCCATGAAGGCAGCGAAGGAGCTGAAGGCTGGTCG
CGACCCGTACTTGTGGCAGCTGGCTTTGCACCACACGCCCTCGTCCGAgt
cccaccacctcctcttcctcatccatcaTGCCATCTCCGACGGCGACTCc
atcctccgctgcctccagTCTTTGATGGAGGGcatggcctccctctctcc
attgTCACCTCACGAGCGCGAACGGAAGCTTGCACAGGTAAAGGCCTTGC
CACAGCTAGCCAGCGCCGATGAGCAGCTATACCCCCAATATAATGGGTAC
TACCTGGTCTACCATTTCCGGACGTTGTTTCGTGAACTGTGGCGTGTAGT
GCTTcggcctcgccttcctcgtccttgccaAATGACCTTGACAGAGGCAC
CGCGAGTGACCCGttgcctctccttcgtcttggACGCCCCCGACTTCAAA
CGCTTGCTGAAAACGTGCAAAGCCAACCAGACTTCTGTGACGGGAGCATT
GGTAGCAGCGACCTCGCAGGCGATGGAAGGCTTTATCGAGgggccaccct
cttctttcaaaatgaaggtggaggtgctAGTCAATTTTCGCGGCAAGGCA
AGTGCCACGTTGGGTTCCAAGGATTCCCACCAGCTCTACGCGGCCCCCAT
GGACATGCTACTGCCGGCGGGGAACAAGGCTGAGACCAGACTTGAATTTT
GGCGGACCGCCCGGGAGGCCAAGCGCGAGATCGACGCCTTCGCTACGGAA
CCCCATCGGATCGTGGACGCTTTGGAGTTCTTCTACATCATGGGCCACCA
TCCCATTGCCATGCCGCTGATCCGCCTGTTCGGTGCCTCTCCACGGCAAG
GCCGGCAAAAGGCCCTCTCAATCTCCAACCTGGGGTCCACGGACAAGCTT
TTCCAGCCGGCAGGGCCCTGGCGCTTGGGCCGGATGCAGATGGGTATTGA
CGAGCTTCTCTTCGGTCACAGCGTCTTCTTGGCCATGGCTTCGCACGAGG
GACGGTTGAATTTCAGCCTGTCCTACATCGAACCCATCGTCtccaaggcc
atggccgaGAATTACTCGCAAGCAGTTATCCGCGCCCTGATCGACGCCTG
CCCTCCGGCCAGCGAAGACGCGCCTCCGACTCCTCAGACGCCGGTCTCTC
GAATCCTGAAAAGTAAATCGCGTGTTTTCGTTGATTACCTTTGGTCCAGC
ACACTGAAAAGGTCGGAAGAAGTCCTCAACATGCATGCTTATGGGACTCT
TTGGAGGTCAAGTATTTATGAGATCAAAGATCAACAGGAAAAGCAATCAA
AATCAAATTCTCTATGGAAGGCGCAAAGAAAACTGCACTCGTCCAAAAGC
CACCTACAATACAGACATGTCGCCTGTGCATCATGA

Synonyms

Publications