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Properties
| Property Name | Value |
|---|
| Product | leucine rich repeat protein |
| Orig transcript id | gnl|cribi|Naga_100006g55.8643.mrna |
| Orig protein id | gnl|cribi|Naga_100006g55.8643 |
| Gene | Cf-5 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1212920..1216125 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1112 ID=rna1112|Name=rna1112|organism=Nannochloropsis gaditana|type=mRNA|length=1508bp
GCCCGTCCTTGTCCCAGGCCACACAGAGTAGCACCGGGACTTTTTTTTCT
CTAAAATTCATCGCAACCTCTTCCTTTTTAAATGCCTGTCGATACAGGTG
GGGGGCACAGGGCGCGCGGTGGCTTTGCAGCGGAAGGCAGGTAGTCAGGA
AGGAGCTGCCTGACAAGAGCTGTTCTTACTCCCGCAGCACACATCATCAT
GGCCCCCGGGGTTTCAGGGAGAAAGTGCCCGTTGTTTCAGCTTCTTGTCC
TCCCCATGGCCTCATGCGTTGCCTTTGCAGGCCATTTGCCCTCATCGGCG
TTGCATACCAGCATGGGCGCGGCAGGGATGGCAAGATCGCCTTTGCTTGT
CCCCCATGGGATTGGGGTCGGGGGCCGATCGTGCCACAGCCTAGGTAGAA
GAGGCCCTGCTTTTTTGCCTTCGCAGTACAGACGAAACTATTTCAAAATG
CGTACATTAGGGCGGCAGCAATCAAGCTCCCCACGCGGCTCCACCTCGTG
GCTTACCCAGGGTGGACTTGGCTTGGTACGCGGAGGAGGGGGCGGCGGAG
GTATCTTATCCGGCGGCGATGGGTACGGCGGTAATGGAAACGGTGACAAT
GAGCACGGTGCCAGCTCAGGATCCTTGCTGCTAATGGCAGCTCTTGGCAC
ATTTAAAAGCTTGTGGGGGCAGTATGCAGAGCTACTAGAAAGTAAGCCAG
TTTTAACCAAGGCGATCACGGCGGGGCTGATTGCCCTGTTCGGCGACCTC
CTGGCCCAAGTTTTTGAGTATAAACTTACCTGCCGTCGCCTCGCCAAAGG
GGAGGAGCCAGCTCCTTTCCACTTAAATTTCCTTCGGTGCTTGGCTGTAA
CAATAGAGGGCGTAGTCATCACAGGTCCAGGCCTCCATTACTTGTACACG
GCTTTGGAAAGCTGGATGCCGGCGCAACGCGGCTTTCTGGCGGCCTTCAC
CCACGTCGCCGTGGACGAATTCATCTTCGACCCCCTCTTTGTCCTTTGTT
TCTTCTTCCTCTGCGGGTTAATTGAAGGGAAGCATTTGAGCCGGGACATC
TTCCCGCAAGTGCAGCGGGAGTATTGGTCGGCGTTGAAGGGCGGATGGGG
GGTATCCATTATGTTCTTGCCTCTTGAATTCGCTACCTTCCGGTGCCTGC
CCTTGCGCCTGCGGGTGCTGGTGGTAAATCTGACGGACGTTGTATGGACG
GCGGTTGTGTCGTTTTTCGGACACCGGGAGCATGTGAGGGAAGTGCGGGG
CAAGTGAGGAGACGGAGGGAGGGGAGGAGGGAGGAAGGGAATGTATATGG
GTCCGGGCCGCCAAGGCGCATGCATAGACGGAGATTCATAGTCTGATAGG
CACGATCATGTAGGATTTGCGAGGGCCATGCTGATACGGCGGCTGAGGAT
GAGAAAGACAATGTACCAATTTATGAAGCTAATTGGCTTACGGCAGTGCC
CTTTCTTTACTTTTTCTTAACTCGAAGAATATCGAAAAGCAAATGACTGT
GTCGACCA back to topprotein sequence of rna1112 >rna1112-protein ID=rna1112-protein|Name=rna1112|organism=Nannochloropsis gaditana|type=polypeptide|length=326bp
MTPATFSLLPAECHDQILSFLRYKDLVRVSMTNVDAWLAYFRVQGRLESI
RVENMAGKRKRRALFSQLRATTGLKTLSLVNVPHPCTGVLFQQVSCMHGL
QELDLSSNGLKGPLPRWLSKHLPLLRRLSLSNNQLSGSLPVEWGAFSRLE
DLKLSFNRLEGNVPETWAGMRSLRLLSLSYNQLSGPVPSFFSSLPALEAL
MLGGNKFNGSLPASLGALSHIHALYLFQNELEGPIPEALGSCLALQILLL
SHNRFTGPLPPFLGGLRQLEELSVSANKLEGELPYDLKKLEHLHVLDLAD
NRFAADAPRSRNVLEAMRLRDCQVYM back to topmRNA from alignment at CM002456.1:1212920..1216125- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1112 ID=rna1112|Name=rna1112|organism=Nannochloropsis gaditana|type=mRNA|length=3206bp|location=Sequence derived from alignment at CM002456.1:1212920..1216125- (Nannochloropsis gaditana)
TTATATTTGAACCCTGAGCCACTGCGCGAACGGAAAAGACCAGGCAGGCT
CCCCATTCCTGTGACGAGGTAAAGCATATCAGGTCACTTGAAGTCTCACT
TCCCGCACCCTGGCCGGTCTGAGCGAGTGGACCTGCATTTGCAAGTGCCG
CGTGCGCAACCCTTTACTGGTCAATTCATGGTACCAATGCTTCGATCGGA
CATTTTTGATGGCTGTCACAACCTTTTTGAGTTTGAATGTCTTTCGTTTG
GTACGGAATTTGAAGTAATGTGACACTTTCCGGGCTTCCCCTTGCTCTTT
GCCAGCCAGTCTTCAACGCGCAACTTGTTGAACGACCGACTTCAACCGCC
TCCCCTCCCATGACATGAAATATGTCACAAGCACAAAGCTTTCACACTAA
TCCCACTAATCCCCATTGCCAGACGATATGACGCCTGCTACTTTCAGCTT
ACTACCAGCTGAGTGTCACGACCAAATTCTGAGTTTTTTACGCTATAAAG
ATGTAAGTGCTGGACGCCGCGGCGAGGGGGCCGTTGTCTGTTAGGAGTGG
CGAAAAGGGCAGGAGGGGCGTGTGTCATGACTTACTGCGACTTGTGATCG
TTCATGTACCATCAACTTTATCATCAACAGCTATGTTTTAAAGTGGGTTC
ACTAGAATCATTGTGGAGTGTGCTCGTAATCGTGCCTATGTTCCCTGTGG
TCATCCATCGAAGGGCCGTTGTTGCTTGAAGTACCCGCTTGCCCTCGACA
TCCTTTTGGCCTGATTTGCTGCCTTATTAACGCAAGGGCTTTTGGGGGGC
TCCAGTCACTTTTATTTGCGTGATGGCAGGATCTATGGGCATGAGAAAAA
CGTGTAGTGGAGAGGCATGACGAGGGCTGAGTTATCACCTCTTCTTCAAC
CAATCTCTGAAATCTCATTTATGTTTCTTTTCTTCCCTCTCCCCCGCAAT
ACAAGCTGGTGCGAGTGTCCATGACAAACGTAGACGCATGGTTGGCGTAC
TTTCGAGTGCAAGGCCGACTTGAAAGCATACGGGTTGAGAATATGGCGGG
GAAACGCAAGCGCCGGGCCCTCTTCTCCCAGCTACGCGCGACCACTGGGC
TGAAGACCTTGAGCCTTGTCAACGTCCCACACCCTTGCACAGGTAGGTTG
ATGGAAGAAAAGCCCCAAGGGTGTTTAATCGCCCCGCTTTGCACCGTGCT
CATGGCCTCCGTCGGCCCATGGCATTTTGGGGGGGGAAAGGGAGGGGGGT
TCCTGCTGCTGCTTGTTGTGCTCTTCACCTGACCGTCTTAAGTCCCTTGT
ACGCGGTGCGTTCCTCACTCTACTTACCTTTTTATCACCTCTCGCCGCCC
TGTCTGCCTTCTTTCGGCCACAGGCGTGCTCTTCCAGCAGGTCAGCTGCA
TGCACGGCCTTCAAGAGCTCGACCTCTCGAGTAATGGCCTCAAGGGCCCC
TTACCCCGGTGGTTGAGCAAACACCTTCCCCTCCTACGCCGCCTCTCTCT
CAGCAATAACCAGCTGAGTGGAAGCCTACCGGTGGAATGGGGAGCCTTTT
CTCGTCTGGAAGACCTAAAACTCTCCTTCAATCGCCTTGAGGGCAACGTC
CCAGAGACATGGGCCGGAATGCGGTCTCTACGCCTGCTTTCCCTCTCCTA
CAACCAGCTCTCGGGGCCCGTCCCCTCCTTTTTTTCCTCCCTGCCCGCCT
TGGAAGCGCTCATGCTGGGAGGAAACAAATTCAACGGCTCCCTTCCCGCG
TCCCTGGGAGCTCTCAGCCACATCCATGCCCTCTACCTCTTTCAAAACGA
GCTGGAAGGGCCCATACCTGAGGCGTTGGGCTCCTGCCTCGCCCTACAAA
TACTCCTCCTCTCGCACAACCGATTCACAGGGCCCCTCCCTCCCTTTCTA
GGGGGGCTTCGGCAGTTGGAGGAACTGAGCGTGAGCGCTAATAAACTTGA
GGGCGAGCTCCCGTATGACCTGAAGAAACTCGAACATTTGCACGTGTTGG
ACCTAGCCGACAATCGATTTGCAGCGGACGCCCCGCGCTCCCGGAACGTG
CTCGAGGCGATGCGCCTGCGCGATTGTCAAGTGTACATGTAGGAGCTCGT
GGTCATGTCGGACGCTTCCCACAGGCTCGGCGCCTGTATTGCCTCCGTAA
AAACCGCGTTCAAGGTAAAAGTTCTCATTTCCTCGAGGTTTAGGGTACTG
GCTGCACTTGTGTTGTAAGAACTCGCATATCTCCATCAAGAATGTGGGAG
GAGCGTCGCTGACCCGAGCTCTTTTCATAGCGAGCGTGCGTGACGCAGGA
ATAGTCCTTTGTCGTAATTAGGTACAGCAAGCGCACGCGAAACCAGGAAT
ATTCTCTTGTTATTTTAATTGCAGTGAAGTACAAATGTGTGCGGGAGATG
GAATTATGAAGTATTGCTTGAGGGAATGTCGTCGAATTTGAGAAATTCCA
CGAGAGCCCTTTCGAAGGTGTAGGAGGCGAGAGTCCGGGCAAGAGAACAT
GTTGCTGGAAAGCAATAATGTATTGATCTTATCCAGGGTAGAAAATCTTC
AAATTATGCGCAGAGATCGAACAGGAGGTCCGGTAGTCAAGGGCGGGAAT
GCATGGCAAAAGAATGTGGTATGGAAACGACGAGGACCGGGTATTAAAGA
GAAAATTTTGGGAAAGTGATTGCATAAATAGACTGAACGGTTGTGCCGGC
AAGAGGTCGGTACCACAATGCGCGTATTCGGGGCGTGAACTTCGCACGTT
GGGAAGATGAACGCTTTGGGATCGGCCAGCAGCTGGGCCACTGGACGACA
TGGAAGCCCCAGGCAGTCTCTCGCATACAAAGAGAGGAGGTTGGCTGAGG
AGCACCGGGAATGGGCAGGAATCCTGGCTTATCTTTAGCGTTGTGGAGGA
TAAACTAAAATTTCCAGGGGCAGACCTAGCGTGTGTTCACAGAAAAAGAG
GGTCAGATAGGCATGGATCCTATTCATAGAAATGAATGAATTGAAATATT
GAAAGCAAGAAGATCCTGGTCGACACAGTCATTTGCTTTTCGATATTCTT
CGAGTTAAGAAAAAGTAAAGAAAGGGCACTGCCGTAAGCCAATTAGCTTC
ATAAATTGGTACATTGTCTTTCTCATCCTCAGCCGCCGTATCAGCATGGC
CCTCGCAAATCCTACATGATCGTGCCTATCAGACTATGAATCTCCGTCTA
TGCATG back to topCoding sequence (CDS) from alignment at CM002456.1:1212920..1216125- >rna1112 ID=rna1112|Name=rna1112|organism=Nannochloropsis gaditana|type=CDS|length=2943bp|location=Sequence derived from alignment at CM002456.1:1212920..1216125- (Nannochloropsis gaditana)
GCGTGCTCTTCCAGCAGGTCAGCTGCATGCACGGCCTTCAAGAGCTCGAC
CTCTCGAGTAATGGCCTCAAGGGCCCCTTACCCCGGTGGTTGAGCAAACA
CCTTCCCCTCCTACGCCGCCTCTCTCTCAGCAATAACCAGCTGAGTGGAA
GCCTACCGGTGGAATGGGGAGCCTTTTCTCGTCTGGAAGACCTAAAACTC
TCCTTCAATCGCCTTGAGGGCAACGTCCCAGAGACATGGGCCGGAATGCG
GTCTCTACGCCTGCTTTCCCTCTCCTACAACCAGCTCTCGGGGCCCGTCC
CCTCCTTTTTTTCCTCCCTGCCCGCCTTGGAAGCGCTCATGCTGGGAGGA
AACAAATTCAACGGCTCCCTTCCCGCGTCCCTGGGAGCTCTCAGCCACAT
CCATGCCCTCTACCTCTTTCAAAACGAGCTGGAAGGGCCCATACCTGAGG
CGTTGGGCTCCTGCCTCGCCCTACAAATACTCCTCCTCTCGCACAACCGA
TTCACAGGGCCCCTCCCTCCCTTTCTAGGGGGGCTTCGGCAGTTGGAGGA
ACTGAGCGTGAGCGCTAATAAACTTGAGGGCGAGCTCCCGTATGACCTGA
AGAAACTCGAACATTTGCACGTGTTGGACCTAGCCGACAATCGATTTGCA
GCGGACGCCCCGCGCTCCCGGAACGTGCTCGAGGCGATGCGCCTGCGCGA
TTGTCAAGTGTACATGTAGCTGGTGCGAGTGTCCATGACAAACGTAGACG
CATGGTTGGCGTACTTTCGAGTGCAAGGCCGACTTGAAAGCATACGGGTT
GAGAATATGGCGGGGAAACGCAAGCGCCGGGCCCTCTTCTCCCAGCTACG
CGCGACCACTGGGCTGAAGACCTTGAGCCTTGTCAACGTCCCACACCCTT
GCACAGATGACGCCTGCTACTTTCAGCTTACTACCAGCTGAGTGTCACGA
CCAAATTCTGAGTTTTTTACGCTATAAAGATGCGTGCTCTTCCAGCAGGT
CAGCTGCATGCACGGCCTTCAAGAGCTCGACCTCTCGAGTAATGGCCTCA
AGGGCCCCTTACCCCGGTGGTTGAGCAAACACCTTCCCCTCCTACGCCGC
CTCTCTCTCAGCAATAACCAGCTGAGTGGAAGCCTACCGGTGGAATGGGG
AGCCTTTTCTCGTCTGGAAGACCTAAAACTCTCCTTCAATCGCCTTGAGG
GCAACGTCCCAGAGACATGGGCCGGAATGCGGTCTCTACGCCTGCTTTCC
CTCTCCTACAACCAGCTCTCGGGGCCCGTCCCCTCCTTTTTTTCCTCCCT
GCCCGCCTTGGAAGCGCTCATGCTGGGAGGAAACAAATTCAACGGCTCCC
TTCCCGCGTCCCTGGGAGCTCTCAGCCACATCCATGCCCTCTACCTCTTT
CAAAACGAGCTGGAAGGGCCCATACCTGAGGCGTTGGGCTCCTGCCTCGC
CCTACAAATACTCCTCCTCTCGCACAACCGATTCACAGGGCCCCTCCCTC
CCTTTCTAGGGGGGCTTCGGCAGTTGGAGGAACTGAGCGTGAGCGCTAAT
AAACTTGAGGGCGAGCTCCCGTATGACCTGAAGAAACTCGAACATTTGCA
CGTGTTGGACCTAGCCGACAATCGATTTGCAGCGGACGCCCCGCGCTCCC
GGAACGTGCTCGAGGCGATGCGCCTGCGCGATTGTCAAGTGTACATGTAG
CTGGTGCGAGTGTCCATGACAAACGTAGACGCATGGTTGGCGTACTTTCG
AGTGCAAGGCCGACTTGAAAGCATACGGGTTGAGAATATGGCGGGGAAAC
GCAAGCGCCGGGCCCTCTTCTCCCAGCTACGCGCGACCACTGGGCTGAAG
ACCTTGAGCCTTGTCAACGTCCCACACCCTTGCACAGATGACGCCTGCTA
CTTTCAGCTTACTACCAGCTGAGTGTCACGACCAAATTCTGAGTTTTTTA
CGCTATAAAGATGCGTGCTCTTCCAGCAGGTCAGCTGCATGCACGGCCTT
CAAGAGCTCGACCTCTCGAGTAATGGCCTCAAGGGCCCCTTACCCCGGTG
GTTGAGCAAACACCTTCCCCTCCTACGCCGCCTCTCTCTCAGCAATAACC
AGCTGAGTGGAAGCCTACCGGTGGAATGGGGAGCCTTTTCTCGTCTGGAA
GACCTAAAACTCTCCTTCAATCGCCTTGAGGGCAACGTCCCAGAGACATG
GGCCGGAATGCGGTCTCTACGCCTGCTTTCCCTCTCCTACAACCAGCTCT
CGGGGCCCGTCCCCTCCTTTTTTTCCTCCCTGCCCGCCTTGGAAGCGCTC
ATGCTGGGAGGAAACAAATTCAACGGCTCCCTTCCCGCGTCCCTGGGAGC
TCTCAGCCACATCCATGCCCTCTACCTCTTTCAAAACGAGCTGGAAGGGC
CCATACCTGAGGCGTTGGGCTCCTGCCTCGCCCTACAAATACTCCTCCTC
TCGCACAACCGATTCACAGGGCCCCTCCCTCCCTTTCTAGGGGGGCTTCG
GCAGTTGGAGGAACTGAGCGTGAGCGCTAATAAACTTGAGGGCGAGCTCC
CGTATGACCTGAAGAAACTCGAACATTTGCACGTGTTGGACCTAGCCGAC
AATCGATTTGCAGCGGACGCCCCGCGCTCCCGGAACGTGCTCGAGGCGAT
GCGCCTGCGCGATTGTCAAGTGTACATGTAGCTGGTGCGAGTGTCCATGA
CAAACGTAGACGCATGGTTGGCGTACTTTCGAGTGCAAGGCCGACTTGAA
AGCATACGGGTTGAGAATATGGCGGGGAAACGCAAGCGCCGGGCCCTCTT
CTCCCAGCTACGCGCGACCACTGGGCTGAAGACCTTGAGCCTTGTCAACG
TCCCACACCCTTGCACAGATGACGCCTGCTACTTTCAGCTTACTACCAGC
TGAGTGTCACGACCAAATTCTGAGTTTTTTACGCTATAAAGAT back to top
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