rna1106, rna1106 (mRNA) Nannochloropsis gaditana

Overview
Namerna1106
Unique Namerna1106
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2958
Alignment locationCM002456.1:1202220..1203626 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g60.8692.mrna
Orig protein idgnl|cribi|Naga_100006g60.8692
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1202220..1203626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g60gene1066Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1106rna1106-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29603.1cds1105Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1106 ID=rna1106|Name=rna1106|organism=Nannochloropsis gaditana|type=mRNA|length=2958bp
ATGTGCTCTTCACAAAGAGCCGCGCCTACCGGGTCTGGGGAGGGTGGAGA
TAAATCTTCTTCTCTTCATCAGCACAATCACAATCATCTCACACCTACGA
TCGGTGCAACACCACATGGGTTTGGCGTAGAAGAAGACGTTGACGCGGCA
GATCTTCCGTCGGGTCCCGCAGATATCCGTGAAAACGAGCTGAAAGAGAG
AAAGAGTAGCGAGACGACTCTGAGTGACAAGAGCTCCGGCACCACAAACG
ATGACACGAAGGAACGAGTGGGCCAAAGCAGCAAAAGCGTTGATGCTGGG
ATAGGCGAAGATGTAGTTGCAGGAAGTGGGAGCAGCAGTTGTAGTGACAG
CAGCAGAAGCAGTAGTAGCAGCAGCAGCGGGGACACGGAGTGCCCGGTCC
CGACCGGGGCGGCGGGAGCTTTGCCCCATGACCTTCATCTCCGGCCATCG
CATCGGAGCCGAGCCAAGCTTGTCATAGACGGTGCATACCTGGAGGCCTC
TCTTACGGCGGCAGGGAACGGACTTGGGAGCCAAGTGGATTTGTTGGCGT
TGCTCTCCCTTCTGGAGGACAGGCTCGAGGTTTCGTTCGAGAAGAAGGTG
CTTTACCAAGGAACACCCGGTGGGCAACCCAATAATTTCCACCGCTTGAT
CGCTCTTGTTGACGGAGCGCATGTCGCGGTGCACCTACAACCTCTCAAGT
CCCGCACCGTCACGCTGGACCTCGGGGGCGGGTGCAAGGAAGACCGGGAG
ATCCTTTTGGACAAGGGCGTCGATCTGGCCCTGGCTTTGGAAATTCTAGA
GCCTTTGGAAAGCGAACGGGCCAACGCCTCGCCCACCCTCTCCTCCTCAT
CCTTGGCCTCGGCGGCGACCAGCACCTCCTTCTCGCAGCCCGTGCTCGTC
GTGTTGACGGGGGACGAAGATATGTGCCCTGTGATGGAGCGGGCGGAGCG
TGTGGGGTATTCGGTGGTAGTGTGCGGGGGCCGCAAAAGCCTGAGCGAAA
AATTGCACCCTTTCGTTCGGAAGGGGGCGGGACAGGCGATCTGGCTGGAG
GACTTGTTGGATCACGCTTCGGCCTTGGGCTCGGGCGCTTGTTTGAATGG
CCACGCCCCAAGGGGAGTGTCCACGTCGGCCAGGCACGCGAATGCCGAAG
CCAGTCCAGCTACGTCAGTGGCGCCGCGGACTCCTCTGATGGTGGGGGAG
CCCGCGGGAACGGTAGGCCAGGGCGGGGGGAGCAGCAGCATAGGCAGTAT
TTCCGGTGCCGGTGGGTATTCCCATGCGGATGGGGGGCTGTTGAACCGCG
GTTTACGGACGGCATCGCCAGCGGGGCCGCTTCTTTTCAAACAACAACAG
CAACAGCAACAGCAGCATCAACCCCAGTACGACCAAGTTCAACAGATTCA
ACAGCAACACGCAGTGTCTTTGCAGCATCATCATCGCGGTGGGGAAAACG
CATCGGGTACCCTCGTCTCTCCCCAGGTCGCCTCCGCCGCGGCTGCTGCT
GCTGCCGCTGCCACTGGACTTGGGGGATACCAATCTCTTCACCCTTCCAT
CGCGGCGTCGCTGGCGTTGAATGGGCGGAATCTGCCCCCGTCGGCTTCCG
CGTCGATCGGTATGGGCCAAAATTCAAGCATCGGGCTGGGTCTCAATCCG
AAACAGAAGTTGTACCGATGTCCGCAGGGCCGTTTTTGCGACAAACTGGA
CGAACCTGGTCACCTTCGTGCCCTGCGACACCCATGTCCGAAAGGATCGA
TATGTGCGGTTGCCTTGAGCGTTTGCAACCCGGGAGCGCTTGGTGCTTCG
GGGGTGAGCGATGCGGACCGACGGGAACACATGCTCACTTTTGTGCACAT
TTGTCCCAAGGGTACGGCTTGTCCTCGCAACGATATTGAGCATTGCACGC
ATTTTGACCACCCTTACCGGCGGACGAAAGCCCGCTGTCCAGAGGGGGGG
ATGTGCCCGTTTATTGCCCGTGGCGTTGGAGCCTCGAATTCGAGCGCGAG
GGAACACAGCCGATTGTATCGACATCCTTGTCCGCGGGGCTCCACCTGCC
CGCTTTTGGCGGGGAAACAACCGTCTGAGAAGAAAAGGTACCACCTGATG
GATTACACACACCCGTGTCACGTGGGATGCAAGTATTCCGTGGATAAGGA
GTGGGCTTGGCAGCACTTCTCCGATTTTGACCATGAGGAGGACCTTCAGC
TGAAGCATCCACAGCCTTTGCATTCCCACCAGACAAGAGGCGGAGGATTA
GACACCCGGACGAGTACGACTGCGGACGACGAGGGCAGCGCGGCCAGTAG
TCAAGTCCTTTTGTCGGGATGGAACTCACCAGGAGGAACAGGCGTGGAGG
GGCAGGCGGAGGGCCCTTTGGGAGGCTCCCTTTTTTCTGCGGACTTTTTC
CAACCTTTCCCACCCAAGGCGTCGGAAAGGGCGGCCGCAGGTCCCCGGGA
GGGCGTGGAGGGGGCCAAGAATGGACCGGGACTGGCCAACCTCGATCAAA
TTGCGGACGTGTTACAACAGGTAACGACTGGCCGAATGGAACAGTCTGCC
CACCCGAACCGTTACCATCGTCCGCAACACGGGCACGGGTACCAGCGGGG
TCAGGCACACCACGCGCGCGCCCATCCTCATCAAGCGCAGCAGTTACAGC
ACTATCAACAGCACCACCATCATCACCCTCAGTACCATCAGCAGCCCCAG
CGCGGTTACCAGCCGTCTCCAGGCATCTTGGCGCCCCTGCGCGATCCATT
GGCTTATCAGCCACACCATTTAGATCAACAGCACCCGCACGCATATTTGC
AGCTGCAAAGTGTACCGGGATCCAGGATGGCAGGTAGTGGAGGCGAGAAT
GAGCAGTCTATCGCAGGCGGCGTCGTCTCGTCCTCGGGGAGGATGGCGCA
CGCGTCAGCTTCGCGGCCGACCCAAGCTATGCAGTCTTCGTGGCAACCCG
GTGCTTGA
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protein sequence of rna1106

>rna1106-protein ID=rna1106-protein|Name=rna1106|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MLKKARRCSVFYFSFLEQAHGRVTEKSRTATLLVDREISHHAHDIHTILL
KTCSNSLYDVASGVTRLQEAIFFANSTKQNLTPPHTLAGKILTYLLSSRA
CVGLKKDFFDGRDAPSTAQGEAR
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mRNA from alignment at CM002456.1:1202220..1203626+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1106 ID=rna1106|Name=rna1106|organism=Nannochloropsis gaditana|type=mRNA|length=1407bp|location=Sequence derived from alignment at CM002456.1:1202220..1203626+ (Nannochloropsis gaditana)
CGTCCCACATCAAATGCAATTCATAGTACTATTATTCTATTTTGCATATA
CTGTCAAGTATGACAGAGAGCATTGAGGTACGGGTCGTGGCCACTGTCGT
CGGATCTGACAGCTTGccccaagagggagaggaggtatTCTCCACCAGGC
GACAAAAGACAAGCATGATGTCTACAGTATGGTTCCACTTTTCTAACACG
ATCAATCATTACTCGTTTCACGCCTCTTCATGTTGAAAAAGGCAAGAAGG
TGCTCAgttttttatttttcattCCTGGAACAAGCTCATGGCCGAGTGAC
GGAAAAGAGCAGGACGGCCACCCTTCTTGTTGACCGAGAAATTTCTCATC
ACGCTCATGACATCCACACGATTCTACTGAAAACGTGTTCAAACTCCCTC
TACGACGTTGCTAGTGGGGTCACGCGTCTCCAAGAGGCTATCTTTTTCGC
AAATTCCACAAAGCAAAATCTCACCCCCCCGCATACGCTCGCCGGAAAGA
TACTCACTTATCTTCTGAGCTCGCGTGCGTGTGTGGGATTAAAAAAAGAC
TTTTTCGACGGCCGGGACGCGCCGAGCACGGCACAAGGGGAAGCGAGGTA
GGTGACATATATTCACAATGTTTCCCAGCTCGAAGACGTCGAACGCGGCG
ATTGTCTTGTGGACTGACGATGGCCTTTGCTTTTCCACAGGCCACGGCTG
GCTGAGTCACAGAATGGAAAATATGGCGACCTGACCGGACACCGAAAGCA
GGGCACGCTGATTACGACAAAAACCACCAGTGCGTGGGAAAGAAATAAAG
ACCCGAAGCCAGCCAGCCCACCAAAGGAGGCTGTGTGGTTTAGATTGTGT
GACGAGGACTAGGATtttatttccccccccagTTTTATTGAATAAATTTT
CGCTCGTCTTCCCATGATATATGTATGTGCCTTGCGTCAGGTTGCGATTT
TCATTGCCCTTAATCACGACCACTGAAAGCCCGCGCCTGAGAGACAAGAA
AAGGTGCGACCCCATGCTCAGGCAGGCAGAGCCACAACAATTTGGATACC
AATATCTGGATTTTTTATGTGCTGAATCCAACAGTAAGGGACGTGCAAGA
GACGTTTGTTGTCAACGTTAACTGAAAGAACGGCTGGCCCCTCGTGCATG
GAAGACCCCTGAAGATGATGGGATGGCATCGAGACACTTTTTCTACAACT
GTGTCGTCAATGCTGTTACACTTGTAACTACAAGGAGTTGTCGTGCATCG
AAGTGAAGTTGCGCTATATTCTTATCGCATCGAGTTTGCTTTTCCACCTA
TACCCTATCCACCTCGAAAATGCCTCCTGCGCCTCTTCACGTACACGATT
GTGAGCATAGGATGCTACATTTTGCGCTTTCATCATGCTTATAGAAGTCC
AAATAAG
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Coding sequence (CDS) from alignment at CM002456.1:1202220..1203626+

>rna1106 ID=rna1106|Name=rna1106|organism=Nannochloropsis gaditana|type=CDS|length=372bp|location=Sequence derived from alignment at CM002456.1:1202220..1203626+ (Nannochloropsis gaditana)
ATGTTGAAAAAGGCAAGAAGGTGCTCAgttttttatttttcattCCTGGA
ACAAGCTCATGGCCGAGTGACGGAAAAGAGCAGGACGGCCACCCTTCTTG
TTGACCGAGAAATTTCTCATCACGCTCATGACATCCACACGATTCTACTG
AAAACGTGTTCAAACTCCCTCTACGACGTTGCTAGTGGGGTCACGCGTCT
CCAAGAGGCTATCTTTTTCGCAAATTCCACAAAGCAAAATCTCACCCCCC
CGCATACGCTCGCCGGAAAGATACTCACTTATCTTCTGAGCTCGCGTGCG
TGTGTGGGATTAAAAAAAGACTTTTTCGACGGCCGGGACGCGCCGAGCAC
GGCACAAGGGGAAGCGAGGTAG
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Synonyms
Publications