rna1104, rna1104 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1104
Unique Name	rna1104
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3272
Alignment location	CM002456.1:1197517..1198181 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100006g62.8614.mrna
Orig protein id	gnl\|cribi\|Naga_100006g62.8614
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1197517..1198181 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g62	gene1064	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1104	rna1104-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29525.1	cds1103	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1197517..1198181-
coding sequence from alignment at CM002456.1:1197517..1198181-

mRNA sequence

>rna1104 ID=rna1104|Name=rna1104|organism=Nannochloropsis gaditana|type=mRNA|length=3272bp
AAGAATGGCACACGACGCGATGATCGTGACGAAGGATTCTCACAATTGGT
ATATCGATGTGGCTGCAATGCCGGCGCAATAATAGTCGTCAAGTTTTCTC
TGAATCACAGTCAAGGAGCGAACATCTCTGCGAATAATTTCCCAAATATT
CTTGTCCACTAGTTTTCGGCCGGCGGACGCGAACGTAGAAGATGCCATGT
GGATGTGGAGCACCTTTTCACACACGCACATTGTCCATCGAGAGCAAGTC
ACTTTAAAAGTGTCATGGAAAGCCATGCATGTGCCTTTACACCTTTCTTT
ACACTTTTCCGTCCAGTCACAGGAGCTATTTTGTAGTATTAGGAGCCACG
TCGCTTTCTTTTCATCTTCGAATCCTACGTCACAATGGCTGAGGAACTAC
GTTTACGATTAAGGGATGCGCAGCGCGTGGTTATCAAAGCAGGAACTTCG
GTTGTCTCAACACCTGAAGGTTATCCTTCCCTTGTCCGATTGGCTCACAT
CGTGGAGCAGATCTGCTTGCTGATCAAGGAGGGCCGTGATGTCCTCCTTG
TCACCAGTGGGGCTGTTGGGATCGGTCAACAGCTCTTAGCCAAGCAGCAG
CGCATGTCTCTCTCCGTGCGCGACGTTGTCAGCGGGCACCCCCCCATTAA
AAAACCAAACGGATACGACAGCGCCTGCGCCGCTGCTGGACAATTGGGCC
TCATGTCCTTGTACGAAACATTGTTTTCGACGCGGCAAATCGCCACTTCT
CAAATCCTGGTGACAGGGTACGACTTTACATGCTCGGATCGTCGGGAGCA
CGTGCAGTACTGCGTGAACTCCCTGCTCCAACTGGGGATCGTCCCTATCA
TCAACGAGAACGACGCCGTCTCGGGAAACGAAGGCTACACCGAGTCCACC
GTCTTCTCTGACAACGACTCCTTGGCCAGTTTAGTCGCCCAGGAAACACA
GGCCGACCTCCTGATTTTGCTCACAGACGTCTGTGGCGTGTACGACAAAC
CGCCCTCCGACGAGGATGCGAAGCAGTTGGGGCTCTATCTCCGGGACTGT
AGTCCCGGCATCGGGGAGAAGTCGGCGCAAGGTCGAGGAGGTATGCAAGC
GAAGATCGATGCCGCCACCGCTGCTGCCAAAGGTGGAGTCGAGCATGTGG
TGATTGCGAGCGGGCACGAGGCGGAGGTGATAGGAAAAATTGCTCGGGGT
GAGAACACGGGGACTCTTTTCTGCCGCGCCGCCCTCTTCCCGCCCGAGGA
GGACATGTCTGCCTCGACGGGGTCCTTGGTGGGCTTGAACGGGAACGGCG
ACGGCCCGGGGACCGTGTGCTCGTCGGGCCCACCGGACGAGCTGTTGGAG
GACATCTTGGCCTTGGAGGCCGAGGGTGGGATCCGCGGACAAGCGCTGGC
GACCAAGGAGGCACAGCGAGCCCTAGCGAGCTTGACGGGTAACGAACGGT
CTCAGATCCTGCTCGCCGTGGCGGACGCTCTGCTGGCCAACACGGCGGAG
ATTTTGGCGGCGAACGACAAGGACTTGGAGGCTGCTCGAGAGTCCGACCT
GGCAGAGCCTTTGCTGAACCGACTGGGTTTGACCAAAGAGAAGCTGATGA
CCCTCGCGGATGGGATCAGGGCCTTGGCGAATATGGAGGAGCCCGTGGGC
CGGCTCGTCTCCCGGATGGAGGTCGCGGCGGGACTCGAGTTGACACAGAC
GACAGTGCCCATCGGCGTCCTCCTCATCGTGTTCGAGTCTCGGCCGGACT
CGCTCCCTCAAATCGCCGCCCTGGCCTTGCGAAGTGGGAACGGTCTCTTG
CTCAAAGGGGGGAAGGAGGCCCTGCATTCCAATCAAGTGCTCCACCGTGT
GATCACGGACGCCATGACCACCGCCTCGGAGGGTCGCGTTCCCGCTGAGG
CCATCGGATTGGTCACCACCAGGTCGGAGGTCTCAGCGCTTTTGGAACTA
GACGATGTGATCGACCTGGTGATTCCTCGTGGCTCTTCTGCCTTGGTCCG
AAGCATCAAGTCCTCCACCCGCATCCCTGTCTTGGGTCATGCCGAGGGTG
TCTGTCACATTTACGTCGACAAGGGAGCGGACTTGAGGAAGGCCGCTCGC
ATTGTCGTCGATGCCAAGACGGACTACCCCGCCGCCTGCAATGCGGTGGA
GACACTCCTGCTGCATCGGTCCTTCGTCGCGGACGGTGCGATCGGGGCAA
GCAAGTTGCTCCGGGCCCTCATGTCGGCAGGTGTGACGGTGCTCGGCGGC
CCCGAGGCCGTGAAAGAAGGCTTGGTTTCCCCGGGACACGCGGCAAAAGA
CCTTCGACAAGAGTATGGGGATTTGACGATCACGGTAGAAGTTGTGGCGG
ACATGGAGGAGGCCATTGCGCACATCCACAAATTTGGGAGCTCCCACACC
GACGCGATCATCACCGAGGACCCCGTATGCGCCGAAGAGTTCCTTCGCAG
CGTGGACTCGGCCTGCGTCTTCCACAACGCGAGCTCTCGCTTTGCGGACG
GCTACCGATTCGGGCTAGGCGCAGAAGTGGGAATAAGTACTGGCCGTATC
CATGCGCGCGGACCTGTGGGGGTCGAAGGTCTACTGACAACCAAATGGCT
TCTGCGCTCAAGTGGCAGCCACACTGTTGCAGATTTTGCAGAGGGAGGTG
ATAAAGTATATACGCACCAGAAGCTTCCTTTACTGGACGGCCATTAAGCA
ATGCAAGTGACAGATAGGGACTTGACAGCGAAACACAAGTGCAATGGAGA
AGAAATAAAGTGAGAGAAAAATACCAGCAAGAAGGACAGTGATTCGAGTA
AGCGACGGGACAAATCAAGAAGGGTTGCAATAACACTACACGTTTTTCTG
AAATTGACGTGAAAAGATCCAGCTATCTTGTTTGAGCGAGGCGTTGGGAG
ACAGGGTAAAATTTGAGCGCTAAATGTTTTTGGAAGATAGTTAATTTTCA
AAAATGTAGGAAATTTTTGGAAGCCTGTCAAATTTCAAAACCTAAAAAAC
TAGTCAGAAGAGATGAGTTTTCAATCGAAATATTACGATAAGAAATTGCG
GTAATAGCCTTTTCATGAAAGAAGAGTTACTTGTCGAGACACAGCAAGCG
AAGACAGCGTGTTCCAATCTAACCTAACCCTAACCAAGGGAGAACTTTCT
CTCCGAGACGTTCCTGCTTTCTTTGAGTATTCTTTCTGTGTCTACAGGCT
TCAATATGCTTGCACAAGGGCTTGCAACGAGGTATGATCCCTACTTGTGA
TTCGTCAAGAGGATATCAAAAA

protein sequence of rna1104

>rna1104-protein ID=rna1104-protein|Name=rna1104|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MIVSAMQDGMANRIADYGCAMKRKLRRVRAATQWPSHNQVQRRERVCRFT
ARAMSAFCRRCQPRQCEKSEKASYFVEGGLCSALERQDGVKIERWWKCDL
RWGKACSGARELFAGVKCIRGNTYVDMVKSKSDMETTAKSRRLHQGKRFD
EIETALMSKCIEQTVV

mRNA from alignment at CM002456.1:1197517..1198181-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1104 ID=rna1104|Name=rna1104|organism=Nannochloropsis gaditana|type=mRNA|length=665bp|location=Sequence derived from alignment at CM002456.1:1197517..1198181- (Nannochloropsis gaditana)
ATGATTGTGTCGGCGATGCAAGATGGAATGGCTAACAGGATTGCAGACTA
CGGATGTGCAATGAAACGCAAGTTGCGACGTGTAAGAGCCGCCACTCAAT
GGCCCTCGCACAATCAAGTCCAACGACGAGAAAGAGGTGTGTGAGAAAAT
CATGGTAAACGTCTTCACACAGAATTTACAGTGTGTCGGTTCACGGCCCG
CGCCATGTCCGCTTTCTGTCGTCGTTGTCAACCTCGACAATGTGAGAAAT
CAGAGAAGGCCTCCTATTTTGTGGAAGGGGGCTTGTGCTCTGCCCTAGAG
AGACAGGATGGAGTTAAGATCGAACGATGGTGGAAGTAAGATGCAGGCAC
ACATGCAAAGGGAAAGGTCCGTAGCCTGGCGAATGTCACTGTAGGTGTGA
TCTTAGATGGGGTAAGGCGTGTTCGGGCGCGCGCGAATTATTTGCGGGTG
TCAAATGCATACGGGGAAACACATATGTCGACATGGTAAAGAGTAAGAGC
GATATGTCGAGTGAGGATGTAGAGCGATGAATCTCACGGCATTGTGGCTT
TTCGTCCTTACTGAGGGAAACAACAGCGAAATCGAGACGACTCCATCAAG
GGAAGCGGTTTGATGAAATTGAGACAGCATTGATGAGCAAGTGTATTGAG
CAGACAGTTGTTTGA

Coding sequence (CDS) from alignment at CM002456.1:1197517..1198181-

>rna1104 ID=rna1104|Name=rna1104|organism=Nannochloropsis gaditana|type=CDS|length=2004bp|location=Sequence derived from alignment at CM002456.1:1197517..1198181- (Nannochloropsis gaditana)
GGAAACAACAGCGAAATCGAGACGACTCCATCAAGGGAAGCGGTTTGATG
AAATTGAGACAGCATTGATGAGCAAGTGTATTGAGCAGACAGTTGTTTGA
GTGTGATCTTAGATGGGGTAAGGCGTGTTCGGGCGCGCGCGAATTATTTG
CGGGTGTCAAATGCATACGGGGAAACACATATGTCGACATGGTAAAGAGT
AAGAGCGATATTGTGTCGGTTCACGGCCCGCGCCATGTCCGCTTTCTGTC
GTCGTTGTCAACCTCGACAATGTGAGAAATCAGAGAAGGCCTCCTATTTT
GTGGAAGGGGGCTTGTGCTCTGCCCTAGAGAGACAGGATGGAGTTAAGAT
CGAACGATGGTGGAAATGATTGTGTCGGCGATGCAAGATGGAATGGCTAA
CAGGATTGCAGACTACGGATGTGCAATGAAACGCAAGTTGCGACGTGTAA
GAGCCGCCACTCAATGGCCCTCGCACAATCAAGTCCAACGACGAGAAAGA
GGGAAACAACAGCGAAATCGAGACGACTCCATCAAGGGAAGCGGTTTGAT
GAAATTGAGACAGCATTGATGAGCAAGTGTATTGAGCAGACAGTTGTTTG
AGTGTGATCTTAGATGGGGTAAGGCGTGTTCGGGCGCGCGCGAATTATTT
GCGGGTGTCAAATGCATACGGGGAAACACATATGTCGACATGGTAAAGAG
TAAGAGCGATATTGTGTCGGTTCACGGCCCGCGCCATGTCCGCTTTCTGT
CGTCGTTGTCAACCTCGACAATGTGAGAAATCAGAGAAGGCCTCCTATTT
TGTGGAAGGGGGCTTGTGCTCTGCCCTAGAGAGACAGGATGGAGTTAAGA
TCGAACGATGGTGGAAATGATTGTGTCGGCGATGCAAGATGGAATGGCTA
ACAGGATTGCAGACTACGGATGTGCAATGAAACGCAAGTTGCGACGTGTA
AGAGCCGCCACTCAATGGCCCTCGCACAATCAAGTCCAACGACGAGAAAG
AGGGAAACAACAGCGAAATCGAGACGACTCCATCAAGGGAAGCGGTTTGA
TGAAATTGAGACAGCATTGATGAGCAAGTGTATTGAGCAGACAGTTGTTT
GAGTGTGATCTTAGATGGGGTAAGGCGTGTTCGGGCGCGCGCGAATTATT
TGCGGGTGTCAAATGCATACGGGGAAACACATATGTCGACATGGTAAAGA
GTAAGAGCGATATTGTGTCGGTTCACGGCCCGCGCCATGTCCGCTTTCTG
TCGTCGTTGTCAACCTCGACAATGTGAGAAATCAGAGAAGGCCTCCTATT
TTGTGGAAGGGGGCTTGTGCTCTGCCCTAGAGAGACAGGATGGAGTTAAG
ATCGAACGATGGTGGAAATGATTGTGTCGGCGATGCAAGATGGAATGGCT
AACAGGATTGCAGACTACGGATGTGCAATGAAACGCAAGTTGCGACGTGT
AAGAGCCGCCACTCAATGGCCCTCGCACAATCAAGTCCAACGACGAGAAA
GAGGGAAACAACAGCGAAATCGAGACGACTCCATCAAGGGAAGCGGTTTG
ATGAAATTGAGACAGCATTGATGAGCAAGTGTATTGAGCAGACAGTTGTT
TGAGTGTGATCTTAGATGGGGTAAGGCGTGTTCGGGCGCGCGCGAATTAT
TTGCGGGTGTCAAATGCATACGGGGAAACACATATGTCGACATGGTAAAG
AGTAAGAGCGATATTGTGTCGGTTCACGGCCCGCGCCATGTCCGCTTTCT
GTCGTCGTTGTCAACCTCGACAATGTGAGAAATCAGAGAAGGCCTCCTAT
TTTGTGGAAGGGGGCTTGTGCTCTGCCCTAGAGAGACAGGATGGAGTTAA
GATCGAACGATGGTGGAAATGATTGTGTCGGCGATGCAAGATGGAATGGC
TAACAGGATTGCAGACTACGGATGTGCAATGAAACGCAAGTTGCGACGTG
TAAGAGCCGCCACTCAATGGCCCTCGCACAATCAAGTCCAACGACGAGAA
AGAG

Synonyms

Publications