rna1099, rna1099 (mRNA) Nannochloropsis gaditana

Overview
Namerna1099
Unique Namerna1099
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2512
Alignment locationCM002456.1:1177131..1177487 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g68.8670.mrna
Orig protein idgnl|cribi|Naga_100006g68.8670
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1177131..1177487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g68gene1059Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1099rna1099-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29581.1cds1098Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1099 ID=rna1099|Name=rna1099|organism=Nannochloropsis gaditana|type=mRNA|length=2512bp
AGGACATCAGAAGACAGGGAAAACAAGGCGTGCATGATTGCCTCGTGAAA
CCACCGTCAATAGCTTACCACCATAATGGCGCCGGCATTGGTGCGGTATT
TATGGCCTATTCAGTGGCTTTTACGCGGCCCGTCGGGTCAACTCTGTTGG
AGCTCGGTCGGCCTCCATCTTTCTCGAGGGGGGCCTCGCAAAGCAATTCG
TCAAGGCCTTAATATGCTTTCATGGCCCGCGACGATGCAGAATGTCGGCA
TCTGCGCCTGTAATGTACTCACTATGATTAGTTTTTACTGACACATGGGT
GGTTTTTGTGCCCTTGTTGGTTGCCACGAGCAGAAACATCAACATAAAAC
TGAATGCCCAGCTTGCCTGCTGGTTGAGGCGTCCGGCTGAGCATAGCGAC
ATAGTCGAGGGTGGTAGCGGCACTACCCTCTCTGCGGGTCACACGCACGG
TATTAACGTTGCTCGTGCTCAGACATTCGTTTCCTATCGTTGCCACGAAT
CTCACGTCTTACGCAGGGGACATGAAAGGGCATGAGTGTCCCACGGCGGA
AGGTGAAGGGAAATCACCTTCGTTGGATGAGACTCCGGACATGGACGTCG
CCTCTACCGCCATGCAAGAGATTGAACTACCCACCACACGGCACAATTCT
CCTCTAGAGAATGCGTCACCAGGTTCATCCCTTTGTTTTGTTCCGGGGGA
AAGCTGCCGGCTCACGTCCAAGGAGTTCTTCTCCTCGTCCGATCTGGGCA
CGACCGTCGATGACGACGTGAATGGGGATTACCTTGATAGCATTATCCCA
GAAGAAAAGCCGGCACATCCCGATGAACTGCTGCAGCGTATCTACACCAT
TTTAATCGCTGGAACAGGTTTCTTGGCGGATAGCTACGACCTGTTCGTGA
TCAACATCGTGCTGCTGATGATGAGACAAAACGAGAGCTACGGACCTCTG
ACACCAGATGTGCAAACCCACGTTTCCTTCATGGCTATCGTGGGAGCGAT
GGCAGGGCAACTCGGTTTCGGATTTTTGGGAGACCAGTACGGGCGCCGGC
GCATGTTCCTGTTAACGGCAGCTTTGACAATAGTAGGAAATGTTTTACAG
GCAACGGCCCAGCCAAGACAGAGCATGGGCATCTACCAACAAATGATGCT
TTATCGCTTCATTATGGGTATGGGGGTAGGAGGGGAATATCCTGCCGCTG
GAACAATCACCTCAGAAAACTCGACGGCCTGGCAGCGGGGCAGGAACCTT
GCGGCCGTCTTCTCCATGCAAGGCGTGGGTAGGCTGCTCTGCGCCCTGGT
CCTACTGATCTCTGCCTTCACGATCGAGAACACCGACCTGCAATGGCGCG
TGGCGATTATTGTGGGCGCGCTACCGATGATGGCGGCCATTTTCTTCCGT
TGGCTGCCGGAGACGGACGCGTTTCGGCACCACGTGGAGGCCCGCTACCC
CAACATGCGGCTGCGTTTCAAGAACATTTGGAGGACCGTGTGGGAAAATC
GGCGGGCCTTGGCCGGGACGGCTGGCTCTTGGTTTATTTTGGACATGCTC
TTCTACGGGAATTCCCTCTTCTCTGCAGACGTGACCGAGACCATGGGCTT
TGGAAGTGGGATCCGTGGGCGGACGGTGCAGAATTTGATCATTCAATCTA
TGGCGATGCCAGGTTACATCTTGGCCGTCATTTTCATCGACCGTATCGGG
AAGAAACGTTTGCAATTGATCGGCTTCTTTGGGGAGGGTTTGATCTTTGG
GTTCATGGCAGCGTATCAGTCACCTTTGAAACAGGCGCCCGTAGTATTCC
TTTTAATGTACGCGCTCACTTTCCTGTTCGACAACTTCGGTGCCAACACC
GCCACATTCGTCATTCCAGCTGTGATTTATCCCACGGAAGCGCGTTCTAC
GTGTCATGGGATTTCTGCTGCCGCCGGCAAGGCAGGGGCCGTAGTTGGCG
CCAGCGCCTTCCTGCGCTTGGTAAGCATGTACTGTCCTAATCACATCTGC
TCGGAAAATGTTGATCCCGCTCTCATTGACAAGGGTATCCGGACAGTTTT
TTACTGGTGCGCCGTCCTCTCTCTCGTCGGCTTCCTCTGGACATGCATTT
TCGTCCACGATCGCAGTCACAAGTCTTTGGATTGTAAAGCTCCATTAACA
GCTCCTGTGGGGTCACCAGAGTACGAGATGGCATAATGAATAATGGAGAA
GACGCGCCCCGGATGGGCGGGACGGGGGCACATTTGGGGAGCGGGAGCGT
AAATGTGGGTGCGATTTTGCTGAACCCGACATAGGGGGAGGGTGCGAAAT
GATGGACAGTAGCTATATGGAAGGCAATGGATTCCTCTGCCACATGCTGT
TGATAAATTGAAAGACTCATCATCAGGCGTGTGCGGCCTCACTTCAGATG
CGAAAAAAGGTGGAAAGATGCGAGCTTTTTAAAAGGGAGAAGGCTCACCC
GCAGGAAAACATTGTGACAATGTACACTCAGAAGAAACGATGTGACACAT
GTACTGCATGGG
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protein sequence of rna1099

>rna1099-protein ID=rna1099-protein|Name=rna1099|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MPAPLWWLGLGIGPGTERRVKWQQSVVVIVITGILNICICLFVQDMSVLV
EDNAFVSLGCRIMSSIMSVQQGKKRSTL
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mRNA from alignment at CM002456.1:1177131..1177487+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1099 ID=rna1099|Name=rna1099|organism=Nannochloropsis gaditana|type=mRNA|length=357bp|location=Sequence derived from alignment at CM002456.1:1177131..1177487+ (Nannochloropsis gaditana)
ATGCCGGCGCCATTATGGTGGTAAGCTATTGACGGTGGTTTCACGAGGCA
ATCATGCACGCCTTGTTTTCCCTGTCTTCTGATGTCCTCCCCAACCCGAG
GCCCATGGCTGAGATTCACTCGTTcacccaccaccgccaggcTCGGCTTA
GGCATCGGTccagggacggaaaggagggtaaaATGGCAGCAAAGCGTGGT
GGTGATCGTGATAACCGGTATTTTAAATATTTGCATCTGTTTGTTTGTCC
AAGACATGTCTGTGTTGGTTGAGGATAACGCTTTCGTTTCCCTTGGTTGC
CGCATTATGTCAAGCATCATGAGCGTGCAGCAAGGCAAGAAGCGCTCAAC
TTTGTAG
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Coding sequence (CDS) from alignment at CM002456.1:1177131..1177487+

>rna1099 ID=rna1099|Name=rna1099|organism=Nannochloropsis gaditana|type=CDS|length=474bp|location=Sequence derived from alignment at CM002456.1:1177131..1177487+ (Nannochloropsis gaditana)
ATGCCGGCGCCATTATGGTGgcTCGGCTTAGGCATCGGTccagggacgga
aaggagggtaaaATGGCAGCAAAGCGTGGTGGTGATCGTGATAACCGGTA
TTTTAAATATTTGCATCTGTTTGTTTGTCCAAGACATGTCTGTGTTGGTT
GAGGATAACGCTTTCGTTTCCCTTGGTTGCCGCATTATGTCAAGCATCAT
GAGCGTGCAGCAAGGCAAGAAGCGCTCAACTTTGTAGATGCCGGCGCCAT
TATGGTGgcTCGGCTTAGGCATCGGTccagggacggaaaggagggtaaaA
TGGCAGCAAAGCGTGGTGGTGATCGTGATAACCGGTATTTTAAATATTTG
CATCTGTTTGTTTGTCCAAGACATGTCTGTGTTGGTTGAGGATAACGCTT
TCGTTTCCCTTGGTTGCCGCATTATGTCAAGCATCATGAGCGTGCAGCAA
GGCAAGAAGCGCTCAACTTTGTAG
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Synonyms
Publications