rna1084, rna1084 (mRNA) Nannochloropsis gaditana

Overview
Namerna1084
Unique Namerna1084
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length516
Alignment locationCM002456.1:1150007..1150435 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g82.8696.mrna
Orig protein idgnl|cribi|Naga_100006g82.8696
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1150007..1150435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g82gene1045Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29607.1cds1083Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1084rna1084-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1084 ID=rna1084|Name=rna1084|organism=Nannochloropsis gaditana|type=mRNA|length=516bp
ATGGGTATTATGCAAGGAATCCTGGAAGAGCCTTCCAAAGTCGGTCGTAG
CGTAAGTTCTGAAGTTGGCAAGGCACATAAAAATAGCGAGCAAGACTCAG
TGGTGGGTTCAACTCGCATGAAAGACTCCGGGCGAAAGCGACTTCGATGT
GGCTACGAGGACGCACGCAGGTTTCATATACCATGCTTCTATATCACTTC
GCATTTAGGTGATCCCTATGCCGTGACAGGAATTTATCGTCTACATGGCC
ACCTTCATTTGGGGGAGATTTGGGCCTTTTTCAAGGCTCTAGATAAATCC
AAGGACAGCATGCGGGGACCTGGCCAACATGAACCGCACACTAAGTTGTT
GCTGCGCCGCTACAGGCATGTCCCTAGGACCGGGACGGCCGAGTGGGAGC
ATAGTACAGCTTTTGTCTTGTCGTTTGTGGCGGATGGCTACACGTCCCGG
CGACGCATCTATTGGCTGACAAGGACCTTTCCCATAAGATGGGAACGTAT
CCGGCGGTTCCCATAA
back to top

protein sequence of rna1084

>rna1084-protein ID=rna1084-protein|Name=rna1084|organism=Nannochloropsis gaditana|type=polypeptide|length=142bp
MTSALSYSLHLALLFSPLLSIFSLMLFPRFFLHAVALSSFRYSSSVSSSL
PRLPSFCPPPFLPSFRPPPRPPLFPPRFPPPSPPSPPSSFNPPPPPQPRP
HPPRPRPSRPPPSSFSFALACFPTSPMTSVKWLPFRPRKHRT
back to top

mRNA from alignment at CM002456.1:1150007..1150435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1084 ID=rna1084|Name=rna1084|organism=Nannochloropsis gaditana|type=mRNA|length=429bp|location=Sequence derived from alignment at CM002456.1:1150007..1150435- (Nannochloropsis gaditana)
ATGACGTCGGCGCTCTCCTACTCCCTTCACCTAGCCTTGCTCTTTTCTCC
TCTCCTTTCTATTTTTTCCCTCATGCTCTTCCCAAGATTCTTTTTGCACG
CGGTGGCTCTCTCTTCATTTCGCTACTCTTCCTCCGTTTCCTCTTCTCTT
CCACGTCTTCCTTCGTTTTGTCCCCCACCTTTCCTTCCTTCGTTTCGTCC
TCCTCCTCGTCCTCCTCTGTTTCCTCCTCGTTTTCCTCCTCCATCTCCTC
CATCTCCTCCTTCATCTTTTAATCCTCCTCCTCCTCCTCAGCCTCGTCCT
CATCCTCCGCGTCCACGTCCTTCGCGTCCGCCTCCCTCTTCCTTTTCATT
TGCTTTGGCGTGCTTTCCCACGAGTCCTATGACAAGCGTGAAATGGCTCC
CATTTCGTCCTCGGAAACATCGGACCTAA
back to top

Coding sequence (CDS) from alignment at CM002456.1:1150007..1150435-

>rna1084 ID=rna1084|Name=rna1084|organism=Nannochloropsis gaditana|type=CDS|length=429bp|location=Sequence derived from alignment at CM002456.1:1150007..1150435- (Nannochloropsis gaditana)
ATGACGTCGGCGCTCTCCTACTCCCTTCACCTAGCCTTGCTCTTTTCTCC
TCTCCTTTCTATTTTTTCCCTCATGCTCTTCCCAAGATTCTTTTTGCACG
CGGTGGCTCTCTCTTCATTTCGCTACTCTTCCTCCGTTTCCTCTTCTCTT
CCACGTCTTCCTTCGTTTTGTCCCCCACCTTTCCTTCCTTCGTTTCGTCC
TCCTCCTCGTCCTCCTCTGTTTCCTCCTCGTTTTCCTCCTCCATCTCCTC
CATCTCCTCCTTCATCTTTTAATCCTCCTCCTCCTCCTCAGCCTCGTCCT
CATCCTCCGCGTCCACGTCCTTCGCGTCCGCCTCCCTCTTCCTTTTCATT
TGCTTTGGCGTGCTTTCCCACGAGTCCTATGACAAGCGTGAAATGGCTCC
CATTTCGTCCTCGGAAACATCGGACCTAA
back to top
Synonyms
Publications