rna1080, rna1080 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1080
Unique Name	rna1080
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1056
Alignment location	CM002456.1:1141998..1143802 +

Link to JBrowse

Properties


Property Name	Value
Product	diacylglycerol acyltransferase family protein
Orig transcript id	gnl\|cribi\|Naga_100006g86.8625.mrna
Orig protein id	gnl\|cribi\|Naga_100006g86.8625
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1141998..1143802 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g86	gene1041	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1080	rna1080-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29536.1	cds1079	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1141998..1143802+
coding sequence from alignment at CM002456.1:1141998..1143802+

mRNA sequence

>rna1080 ID=rna1080|Name=rna1080|organism=Nannochloropsis gaditana|type=mRNA|length=1056bp
ATGCGTAACACGTTCGGCTTGGGGATGCTTGCTTTTTGTGTCGGCTCCTG
TTCTGCTTTCACCGTGCCTCGTTTACTACGTGCATCATCAAGCCCGATAG
CTATGGCCAATGCTGCCGCTGCTCGGCGCGGAAGCTCATCTATGATGGCC
ACGGTGGCAACACCTGGAGCTGCATCGGTCAAGCGTCTCACATCCCCGGA
AGAGGAGCTGCTGAAGAACACCGACGTGTTTATATTCGATTGTGATGGCG
TGATATGGCGAGGAGACTCGTTGATTGACAAAGTGCCATCTGTGCTGGAG
AAATTGCGAGCGATGGGGAAGCGGATGTTTTTTGTCACCAACAACTCAAC
TAAAAGCCGTAAAGGCTACAAGAGTAAATTTTCGTCTCTTGGGCTGGATG
TGCAGGACGAAGAAATTTTTTCCTCCTCTTTTGCGGCTGCTGCATACCTG
GAGCAGAAGAATTTTAAGGCAACTGGCAAGAAAGTCTACGTTATTGGAGA
GGTAGGGATCGGGGAAGAATTGGACCTCATCGGTGTTCCGCACATTGGCG
GTCCGGCAGATAAAGGTAAAACGATCGAATTGACGCCGGGGTATGCCCTG
GAGATCGATCACGATGTGGGTGCCGTGGTCGTGGGCTTTGATCGTCACTT
TAACTACCATAAAATCCAGTACGCTCAATTGGCCATCAATGAAAACGGCG
CGGAATTCATCGCAACGAACATGGACGCCGTCACGCACTTGACTGACGCC
CAGGAATGGGCGGGCGCAGGATCGATGGTGGGATGCATCAAAGGATGCAC
AGGAAAGGAGCCGACCCTCGTAGGGAAGCCGAGCCCGTTGATGATCGACT
ACATCGTCTATAAATATAAGATCCCCAAGGACAAGATCTGCATGGTTGGT
GACCGACTGGACACGGACATATTGTTTGGGAAGGACAACGGATTGAAGAC
GGTCCTGACGCTGAGTGGGGTCACCTCTGAGGAGAAATTGTTGGGCGCGG
CCAACAAGATCCATCCCGACTTCTTCGTCTCTTCGATCGCCGACTTTTTC
CCTTAG

protein sequence of rna1080

>rna1080-protein ID=rna1080-protein|Name=rna1080|organism=Nannochloropsis gaditana|type=polypeptide|length=397bp
MVLGEGKKTDGKSTDPAKATEEKRVPAPLRERKGKKQEGKDLRTPSSNLK
PARSPTEVDWSSFPEGSYTRFGHGGDWWTFLKGTLAILTVWATWLGGGTS
PVWMACLYMHGYRVAFWILLGPLLYPLFLPVPAWPAFVRFVLDMAGYFEG
GAAMYVENSFKGRNVNGPIMLAMHPHGIMPHSFLLNGAGRIHAQKPEFYL
PPHYQDMSLKSTGVAEPLLFRIPLISAFLYFFGCAEPASKAMMHNILERQ
VPFGILVGGSEEILLMEYQRENVYILERKGFIKYALQHGYTIALGYLFGE
SNLYHTITWGRKLRLALFKRFKIPIFFARGRWFFPLLPERATPLNAVVGN
PIDLPRIADPTQEDIDKYHAIYIEKLTDLFERNKAAFGYPDRELHLF

mRNA from alignment at CM002456.1:1141998..1143802+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1080 ID=rna1080|Name=rna1080|organism=Nannochloropsis gaditana|type=mRNA|length=1805bp|location=Sequence derived from alignment at CM002456.1:1141998..1143802+ (Nannochloropsis gaditana)
ACAGGGACAGCGTGATCATGGTGCTTGGGGAGGGCAAAAAAACTGATGGC
AAGTCGACCGATCCAGCAAAAGCGACCGAGGAGAAgcgcgtccccgcccc
gctgCGAGAGCGCaaagggaagaagcaggaagggaaagactTGCGAACCC
CATCTAGCAACCTGAAACCTGCGCGTTCCCCCACGGAGGTCGATTGGAGT
TCTTTTCCCGAGGGAAGCTACACACGTTTTGGGCATGGTGGGGATTGGTG
GACCTTCTTGAAAGGCACACTTGCCATTTTAACAGTGTGGGCAACCTGGT
TAGGGGGGGGCACTTCACCCGTATGGATGGCTTGTTTATACATGCATGGG
TACCGAGTTGCATTCTGGATCCTGTTGGGCCCTTTACTTTAtccgctttt
ccttcctgtcccaGCCTGGCCTGCATTTGTTCGTTTCGTGTTGGACATGG
CCGGTTATTTTGAGGTACGGATACACCGTCGattgaggggggaggacaag
agagaaAGTGAGGCGGAGTGCGGAAGAAAATGTCCTTCCCAGTAGGAGTT
GGTCTGAAAAGCTGATCATCTTTGTCTTCCGTGAGCATGGGGGTCGAGAT
CGCGCAGATCGAGTCTGCTTGAATCAccattctctttttccctaaccgct
ttcctcctccctcatcttctccttctttcaccCGTCAGGGTGGGGCCGCC
ATGTACGTCGAGAATTCTTTCAAGGGCAGGAATGTCAACGGTCCAATCAT
GCTGGCCATGCATCCCCATGGGATCATGCCGCACTCCTTCCTTTTGAACG
GCGCAGGCCGGATTCATGCCCAAAAACCCGAATtttacctccccccccac
taCCAAGACATGTCCCTGAAATCGACGGGGGTGGCGGAACCGCTCCTCTT
TCGCATCCCTTTGATATCTGCCTTTCTGTACTTTTTTGGATGCGCGGAGC
CGGCGTCGAAGGCGATGATGCACAACATCTTGGAGCGGCAGGTGCCTTTT
GGCATTTTGGTAGGTAGACCCTCGGGCTCACTGGCGGGTGTGGTTGGGGg
caatggaagaggaagctcACCTTGTGTCTGCTTTGGATCCCATGTGCTCA
CAGGTGGGAGGCTCGGAGGAGATTTTGCTGATGGAGTATCAACGAGAGAA
TGTCTACATTTTGGAGCGAAAAGGCTTCATTAAATACGCGTTACAGCACG
GCTATACTATCGCCCTGGGGTATTTGTTCGGAGAGAGCAACCTGTACCAC
ACCATCACCTGGGGCCGGAAGCTCCGGCTTGCCCTTTTCAAGCGCTTCAA
GATCCCAATCTTCTTCGCCCGGGGACGCTGGTTTTTCCCCCTACTGCCCG
AACGGGCCACCCCCCTTAACGCCGTGGTCGGAAACCCCATCGACCTGCCT
CGGATCGCCGACCCGACCCAGGAGGACATAGACAAATACCACGCGATCTA
TATCGAGAAGCTCACGGACTTATTTGAGCGGAATAAGGCTGCCTTTGGAT
ACCCGGACCGGGAGCTGCATCTGTtttgaaggggggggggcacctCCTTG
GGGCGGCAGACGGGAAAAGACTACGAAGGGGCAGTAGTCGGCAGGCATGC
CGTGTCAGTGACCGGACACTTCCAGGGTGGTAGTTGTTGTTTGGGTGATT
ggtcaaggaaggggggaaggaggggccaggTCTGGATGGGTTTGGAAGTA
AAGGGGGTGTACAGTGTGGGAGAGGCAACGGCGATGAATGCCTGATGGGC
GACAAACCAAACAGACAAAAAGTAACGATAGACAAGCAAGTGCGGATTTG
TCACG

Coding sequence (CDS) from alignment at CM002456.1:1141998..1143802+

>rna1080 ID=rna1080|Name=rna1080|organism=Nannochloropsis gaditana|type=CDS|length=3582bp|location=Sequence derived from alignment at CM002456.1:1141998..1143802+ (Nannochloropsis gaditana)
ATGGTGCTTGGGGAGGGCAAAAAAACTGATGGCAAGTCGACCGATCCAGC
AAAAGCGACCGAGGAGAAgcgcgtccccgccccgctgCGAGAGCGCaaag
ggaagaagcaggaagggaaagactTGCGAACCCCATCTAGCAACCTGAAA
CCTGCGCGTTCCCCCACGGAGGTCGATTGGAGTTCTTTTCCCGAGGGAAG
CTACACACGTTTTGGGCATGGTGGGGATTGGTGGACCTTCTTGAAAGGCA
CACTTGCCATTTTAACAGTGTGGGCAACCTGGTTAGGGGGGGGCACTTCA
CCCGTATGGATGGCTTGTTTATACATGCATGGGTACCGAGTTGCATTCTG
GATCCTGTTGGGCCCTTTACTTTAtccgcttttccttcctgtcccaGCCT
GGCCTGCATTTGTTCGTTTCGTGTTGGACATGGCCGGTTATTTTGAGGGT
GGGGCCGCCATGTACGTCGAGAATTCTTTCAAGGGCAGGAATGTCAACGG
TCCAATCATGCTGGCCATGCATCCCCATGGGATCATGCCGCACTCCTTCC
TTTTGAACGGCGCAGGCCGGATTCATGCCCAAAAACCCGAATtttacctc
cccccccactaCCAAGACATGTCCCTGAAATCGACGGGGGTGGCGGAACC
GCTCCTCTTTCGCATCCCTTTGATATCTGCCTTTCTGTACTTTTTTGGAT
GCGCGGAGCCGGCGTCGAAGGCGATGATGCACAACATCTTGGAGCGGCAG
GTGCCTTTTGGCATTTTGGTGGGAGGCTCGGAGGAGATTTTGCTGATGGA
GTATCAACGAGAGAATGTCTACATTTTGGAGCGAAAAGGCTTCATTAAAT
ACGCGTTACAGCACGGCTATACTATCGCCCTGGGGTATTTGTTCGGAGAG
AGCAACCTGTACCACACCATCACCTGGGGCCGGAAGCTCCGGCTTGCCCT
TTTCAAGCGCTTCAAGATCCCAATCTTCTTCGCCCGGGGACGCTGGTTTT
TCCCCCTACTGCCCGAACGGGCCACCCCCCTTAACGCCGTGGTCGGAAAC
CCCATCGACCTGCCTCGGATCGCCGACCCGACCCAGGAGGACATAGACAA
ATACCACGCGATCTATATCGAGAAGCTCACGGACTTATTTGAGCGGAATA
AGGCTGCCTTTGGATACCCGGACCGGGAGCTGCATCTGTtttgaATGGTG
CTTGGGGAGGGCAAAAAAACTGATGGCAAGTCGACCGATCCAGCAAAAGC
GACCGAGGAGAAgcgcgtccccgccccgctgCGAGAGCGCaaagggaaga
agcaggaagggaaagactTGCGAACCCCATCTAGCAACCTGAAACCTGCG
CGTTCCCCCACGGAGGTCGATTGGAGTTCTTTTCCCGAGGGAAGCTACAC
ACGTTTTGGGCATGGTGGGGATTGGTGGACCTTCTTGAAAGGCACACTTG
CCATTTTAACAGTGTGGGCAACCTGGTTAGGGGGGGGCACTTCACCCGTA
TGGATGGCTTGTTTATACATGCATGGGTACCGAGTTGCATTCTGGATCCT
GTTGGGCCCTTTACTTTAtccgcttttccttcctgtcccaGCCTGGCCTG
CATTTGTTCGTTTCGTGTTGGACATGGCCGGTTATTTTGAGGGTGGGGCC
GCCATGTACGTCGAGAATTCTTTCAAGGGCAGGAATGTCAACGGTCCAAT
CATGCTGGCCATGCATCCCCATGGGATCATGCCGCACTCCTTCCTTTTGA
ACGGCGCAGGCCGGATTCATGCCCAAAAACCCGAATtttacctccccccc
cactaCCAAGACATGTCCCTGAAATCGACGGGGGTGGCGGAACCGCTCCT
CTTTCGCATCCCTTTGATATCTGCCTTTCTGTACTTTTTTGGATGCGCGG
AGCCGGCGTCGAAGGCGATGATGCACAACATCTTGGAGCGGCAGGTGCCT
TTTGGCATTTTGGTGGGAGGCTCGGAGGAGATTTTGCTGATGGAGTATCA
ACGAGAGAATGTCTACATTTTGGAGCGAAAAGGCTTCATTAAATACGCGT
TACAGCACGGCTATACTATCGCCCTGGGGTATTTGTTCGGAGAGAGCAAC
CTGTACCACACCATCACCTGGGGCCGGAAGCTCCGGCTTGCCCTTTTCAA
GCGCTTCAAGATCCCAATCTTCTTCGCCCGGGGACGCTGGTTTTTCCCCC
TACTGCCCGAACGGGCCACCCCCCTTAACGCCGTGGTCGGAAACCCCATC
GACCTGCCTCGGATCGCCGACCCGACCCAGGAGGACATAGACAAATACCA
CGCGATCTATATCGAGAAGCTCACGGACTTATTTGAGCGGAATAAGGCTG
CCTTTGGATACCCGGACCGGGAGCTGCATCTGTtttgaATGGTGCTTGGG
GAGGGCAAAAAAACTGATGGCAAGTCGACCGATCCAGCAAAAGCGACCGA
GGAGAAgcgcgtccccgccccgctgCGAGAGCGCaaagggaagaagcagg
aagggaaagactTGCGAACCCCATCTAGCAACCTGAAACCTGCGCGTTCC
CCCACGGAGGTCGATTGGAGTTCTTTTCCCGAGGGAAGCTACACACGTTT
TGGGCATGGTGGGGATTGGTGGACCTTCTTGAAAGGCACACTTGCCATTT
TAACAGTGTGGGCAACCTGGTTAGGGGGGGGCACTTCACCCGTATGGATG
GCTTGTTTATACATGCATGGGTACCGAGTTGCATTCTGGATCCTGTTGGG
CCCTTTACTTTAtccgcttttccttcctgtcccaGCCTGGCCTGCATTTG
TTCGTTTCGTGTTGGACATGGCCGGTTATTTTGAGGGTGGGGCCGCCATG
TACGTCGAGAATTCTTTCAAGGGCAGGAATGTCAACGGTCCAATCATGCT
GGCCATGCATCCCCATGGGATCATGCCGCACTCCTTCCTTTTGAACGGCG
CAGGCCGGATTCATGCCCAAAAACCCGAATtttacctccccccccactaC
CAAGACATGTCCCTGAAATCGACGGGGGTGGCGGAACCGCTCCTCTTTCG
CATCCCTTTGATATCTGCCTTTCTGTACTTTTTTGGATGCGCGGAGCCGG
CGTCGAAGGCGATGATGCACAACATCTTGGAGCGGCAGGTGCCTTTTGGC
ATTTTGGTGGGAGGCTCGGAGGAGATTTTGCTGATGGAGTATCAACGAGA
GAATGTCTACATTTTGGAGCGAAAAGGCTTCATTAAATACGCGTTACAGC
ACGGCTATACTATCGCCCTGGGGTATTTGTTCGGAGAGAGCAACCTGTAC
CACACCATCACCTGGGGCCGGAAGCTCCGGCTTGCCCTTTTCAAGCGCTT
CAAGATCCCAATCTTCTTCGCCCGGGGACGCTGGTTTTTCCCCCTACTGC
CCGAACGGGCCACCCCCCTTAACGCCGTGGTCGGAAACCCCATCGACCTG
CCTCGGATCGCCGACCCGACCCAGGAGGACATAGACAAATACCACGCGAT
CTATATCGAGAAGCTCACGGACTTATTTGAGCGGAATAAGGCTGCCTTTG
GATACCCGGACCGGGAGCTGCATCTGTtttga

Synonyms

Publications