rna1079, rna1079 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1079
Unique Name	rna1079
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	243
Alignment location	CM002456.1:1140582..1141637 -

Link to JBrowse

Properties


Property Name	Value
Product	haloacid dehalogenase-like hydrolase domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100006g87.8690.mrna
Orig protein id	gnl\|cribi\|Naga_100006g87.8690
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1140582..1141637 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g87	gene1040	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29601.1	cds1078	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1079	rna1079-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1140582..1141637-
coding sequence from alignment at CM002456.1:1140582..1141637-

mRNA sequence

>rna1079 ID=rna1079|Name=rna1079|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGGAGGGATTGGCGGGTGAGAGCACGCTAGGTATGAAGGTACTGCGAGC
AGCGCATGATTGTGATGTTGAGCTTCTCCCCCAACGGTTATTGTGCGTCT
ACACATTCTTTTCTGTGAACTGGCAGTGGAAGTTGTCTTTTCTCTCTGCC
CATCACTCCTATCCAGGGACAGGGTGGCCGCATGGCAGTGTCGAAACAGA
TCGAACCCGAAAAATACAAATCAAACCCGAAAAATCAAGATAA

protein sequence of rna1079

>rna1079-protein ID=rna1079-protein|Name=rna1079|organism=Nannochloropsis gaditana|type=polypeptide|length=351bp
MRNTFGLGMLAFCVGSCSAFTVPRLLRASSSPIAMANAAAARRGSSSMMA
TVATPGAASVKRLTSPEEELLKNTDVFIFDCDGVIWRGDSLIDKVPSVLE
KLRAMGKRMFFVTNNSTKSRKGYKSKFSSLGLDVQDEEIFSSSFAAAAYL
EQKNFKATGKKVYVIGEVGIGEELDLIGVPHIGGPADKGKTIELTPGYAL
EIDHDVGAVVVGFDRHFNYHKIQYAQLAINENGAEFIATNMDAVTHLTDA
QEWAGAGSMVGCIKGCTGKEPTLVGKPSPLMIDYIVYKYKIPKDKICMVG
DRLDTDILFGKDNGLKTVLTLSGVTSEEKLLGAANKIHPDFFVSSIADFF
P

mRNA from alignment at CM002456.1:1140582..1141637-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1079 ID=rna1079|Name=rna1079|organism=Nannochloropsis gaditana|type=mRNA|length=1056bp|location=Sequence derived from alignment at CM002456.1:1140582..1141637- (Nannochloropsis gaditana)
ATGCGTAACACGTTCGGCTTGGGGATGCTTGCTTTTTGTGTCGGCTCCTG
TTCTGCTTTCACCGTGCCTCGTTTACTACGTGCATCATCAAGCCCGATAG
CTATGGCCAATGCTGCCGCTGCTCGGCGCGGAAGCTCATCTATGATGGCC
ACGGTGGCAACACCTGGAGCTGCATCGGTCAAGCGTCTCACATCCCCGGA
AGAGGAGCTGCTGAAGAACACCGACGTGTTTATATTCGATTGTGATGGCG
TGATATGGCGAGGAGACTCGTTGATTGACAAAGTGCCATCTGTGCTGGAG
AAATTGCGAGCGATGGGGAAGCGGATGTTTTTTGTCACCAACAACTCAAC
TAAAAGCCGTAAAGGCTACAAGAGTAAATTTTCGTCTCTTGGGCTGGATG
TGCAGGACGAAGAAATTTTTTCCTCCTCTTTTGCGGCTGCTGCATACCTG
GAGCAGAAGAATTTTAAGGCAACTGGCAAGAAAGTCTACGTTATTGGAGA
GGTAGGGATCGGGGAAGAATTGGACCTCATCGGTGTTCCGCACATTGGCG
GTCCGGCAGATAAAGGTAAAACGATCGAATTGACGCCGGGGTATGCCCTG
GAGATCGATCACGATGTGGGTGCCGTGGTCGTGGGCTTTGATCGTCACTT
TAACTACCATAAAATCCAGTACGCTCAATTGGCCATCAATGAAAACGGCG
CGGAATTCATCGCAACGAACATGGACGCCGTCACGCACTTGACTGACGCC
CAGGAATGGGCGGGCGCAGGATCGATGGTGGGATGCATCAAAGGATGCAC
AGGAAAGGAGCCGACCCTCGTAGGGAAGCCGAGCCCGTTGATGATCGACT
ACATCGTCTATAAATATAAGATCCCCAAGGACAAGATCTGCATGGTTGGT
GACCGACTGGACACGGACATATTGTTTGGGAAGGACAACGGATTGAAGAC
GGTCCTGACGCTGAGTGGGGTCACCTCTGAGGAGAAATTGTTGGGCGCGG
CCAACAAGATCCATCCCGACTTCTTCGTCTCTTCGATCGCCGACTTTTTC
CCTTAG

Coding sequence (CDS) from alignment at CM002456.1:1140582..1141637-

>rna1079 ID=rna1079|Name=rna1079|organism=Nannochloropsis gaditana|type=CDS|length=1056bp|location=Sequence derived from alignment at CM002456.1:1140582..1141637- (Nannochloropsis gaditana)
ATGCGTAACACGTTCGGCTTGGGGATGCTTGCTTTTTGTGTCGGCTCCTG
TTCTGCTTTCACCGTGCCTCGTTTACTACGTGCATCATCAAGCCCGATAG
CTATGGCCAATGCTGCCGCTGCTCGGCGCGGAAGCTCATCTATGATGGCC
ACGGTGGCAACACCTGGAGCTGCATCGGTCAAGCGTCTCACATCCCCGGA
AGAGGAGCTGCTGAAGAACACCGACGTGTTTATATTCGATTGTGATGGCG
TGATATGGCGAGGAGACTCGTTGATTGACAAAGTGCCATCTGTGCTGGAG
AAATTGCGAGCGATGGGGAAGCGGATGTTTTTTGTCACCAACAACTCAAC
TAAAAGCCGTAAAGGCTACAAGAGTAAATTTTCGTCTCTTGGGCTGGATG
TGCAGGACGAAGAAATTTTTTCCTCCTCTTTTGCGGCTGCTGCATACCTG
GAGCAGAAGAATTTTAAGGCAACTGGCAAGAAAGTCTACGTTATTGGAGA
GGTAGGGATCGGGGAAGAATTGGACCTCATCGGTGTTCCGCACATTGGCG
GTCCGGCAGATAAAGGTAAAACGATCGAATTGACGCCGGGGTATGCCCTG
GAGATCGATCACGATGTGGGTGCCGTGGTCGTGGGCTTTGATCGTCACTT
TAACTACCATAAAATCCAGTACGCTCAATTGGCCATCAATGAAAACGGCG
CGGAATTCATCGCAACGAACATGGACGCCGTCACGCACTTGACTGACGCC
CAGGAATGGGCGGGCGCAGGATCGATGGTGGGATGCATCAAAGGATGCAC
AGGAAAGGAGCCGACCCTCGTAGGGAAGCCGAGCCCGTTGATGATCGACT
ACATCGTCTATAAATATAAGATCCCCAAGGACAAGATCTGCATGGTTGGT
GACCGACTGGACACGGACATATTGTTTGGGAAGGACAACGGATTGAAGAC
GGTCCTGACGCTGAGTGGGGTCACCTCTGAGGAGAAATTGTTGGGCGCGG
CCAACAAGATCCATCCCGACTTCTTCGTCTCTTCGATCGCCGACTTTTTC
CCTTAG

Synonyms

Publications