rna1077, rna1077 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1077
Unique Name	rna1077
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	670
Alignment location	CM002456.1:1136635..1140409 +

Link to JBrowse

Properties


Property Name	Value
Product	heat shock protein 90
Orig transcript id	gnl\|cribi\|Naga_100006g89.8693.mrna
Orig protein id	gnl\|cribi\|Naga_100006g89.8693
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1136635..1140409 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g89	gene1038	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1077	rna1077-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29604.1	cds1076	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1136635..1140409+
coding sequence from alignment at CM002456.1:1136635..1140409+

mRNA sequence

>rna1077 ID=rna1077|Name=rna1077|organism=Nannochloropsis gaditana|type=mRNA|length=670bp
CGTTTTGTTTCCCTCGTGTCAAGGTTATGTCAAACTCACTGCTTTCTCCT
TCCTCCTAATCTTACAAAGGGTTGACGGATGGTGGCATTGGACCTGGACC
TTGCTCTTATAATTCATGGCGGCTTTGAGGGTATCGTCGGCTTGATCCTC
TTGTTGCAGCCGCACTATGTCTTTCCGTACATTGCTAGGCGTGCATCTTA
CAACAATAGTGAACGATCCCTTCTTCGGTGGTTCGCCTTCAGCATTATCG
TCCAGGCTATTGTCGCATATGCCGCCATCATGAAACTCGACGCTAAAACG
AAACGCATCATTTTGTCGGCCTTCCTCTTCTACCACTCTGTCATCGTAGT
GGATGCATCCTATGGGTACTACTTGGAAGGCACGCTTGATGAGGCTGCCA
CGGGGTTACACGCGATTATGATGGTTGTGGTCGGGTTTTTATTAGCCGCC
GGTGGACGACGTGCCCGAAGTTCGCCGCGGAAAACACGGTAAGAGACGGT
GTGAATTTTCAAGAGTGCGTGAAAATGACAAGTTGGGTCTGATGGTGTGG
GCATTAATTTACGAAGTACAAAAGAGCATGCAAAGAAAGAATCAGCAACT
TTGCCAGTAAGCACGAATTACGACTAAAACGTGTATGACATTGACGAGAA
AAATAGACTCTAAGATGATT

protein sequence of rna1077

>rna1077-protein ID=rna1077-protein|Name=rna1077|organism=Nannochloropsis gaditana|type=polypeptide|length=713bp
MSGDAETFAFSADINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRYM
SLTDKSVLDSEPELEIRLIPDKANGTLTIEDTGIGMTKADLINNLGTIAK
SGTKAFMEALQAGADISMIGQFGVGFYSSYLVADKVVVTSKNNDDEQYTW
VSEAGGSFTVTPDTSGKPLGRGTRIVLHLKEDMKEYLEERRIKDLVKKHS
EFIGFPIKLYVEKTTEKEVTDDEAEEEEEEKEGEEKPKVEEMDMEDEKEK
KEKKTKKIKEVTHEWVHLNQQKPIWMRNPEEITQEEYAAFYKSLTNDWEE
HAAVKHFSVEGQLEFKAVLFVPKRAPFDMFEGGSKRKCNNIKLYVRRVFI
MDNCEELMPEYLQFVKGVVDSEDLPLNISRETLQQNKILKVIRKNLVKKS
IELFNELAEDTEKYKKFYEAFAKNIKLGVHEDSTNRAKLAKLLRYYSTKS
GEEMTGFDDYLARMPEKQPGIYYVTGESKRAVENSPFLERLKKKGYEVLF
MIDPIDEYAVQQLKEYEGKKLICVTKEGLKIDEDDEEEAKAFEELKAKTE
GLCKLMKEVLDEKVDKVVVSPRLADSPCVLVTGEYGWSANMERIMKAQAL
RDSSTSAYMTSKKTMEINPKHPIVKALREKAEANQTDKTLKDLTWLLYDT
SLLTSGFSLDDPNTFASRIHRLIKLGLSIDEDVEEEEGAGGKDDELPPLE
EGGEGESAMETVD

mRNA from alignment at CM002456.1:1136635..1140409+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1077 ID=rna1077|Name=rna1077|organism=Nannochloropsis gaditana|type=mRNA|length=3775bp|location=Sequence derived from alignment at CM002456.1:1136635..1140409+ (Nannochloropsis gaditana)
CATGTTCCGTGGGCACCACAATTGTTCTATTTTCGACGTCAGTCTCTGAG
TGGTGGTGGCATTTTTTCACTGTCTACGCTTGTACTGGTGCGTACATTTG
GTATTTCATCTGAGAGCATAAATTACTCAATCTGTATGCATCGGGGAAGG
ATTTCAACTCTGCGTGCATCACTTTTTTTGCTCGAACAAAGCGCAGGAAG
CAACGAAGgctgcttctttctttttcctcttgcgATATTTCTTGCAAGGA
GTCTGTAAGACAGCGACTTGCTTGCGAGAGCAACGTTGTAGGTAACATAT
ACTCTCTCGTGTTGTACTGTTTATTGACGTGCGGTCAGTTCTGTAGGGTT
TTTGGTGCAGACAAGGATTTTCTCATGCCGTTGTGTGAGTGTGTGGGTGG
GGCAGGGTGCACTGTTTTTGACACCAAATAAAAACAACCCTTGACACGAG
GAGGCCAGTAATATTTTCCCGTGTCGATGAAGATATGTCTGCCCAGGCCT
TCGTCGTAATGTTGGAGGTAGTCATTGGATGTGAAATGATGGGCGGGTTA
AATACGAAAACATCTTCGCCCCtatggaaggggaagggtggggggcaAAT
GAACTCCCGTCCTATTCCCATGCCCGGCCTTCATCGAGATTCTTACTCTG
TTTCCTCTATGTATACAGAACAGCCTACACAGATTCTTTCGGAGTAAGCT
AAGAGAAGCAACCATGTCTGGCGATGCCGAAACATTTGCCTTCTCGGCGG
ATATCAATCAATTGCTATCCCTGATTATCAACACCTTCTACTCCAACAAG
GAAATTTTCCTTCGCGAACTCATCAGGTAGGTGAAAATTCTCGTGCTCTG
AACGCACAGACTCTTTTTGGATACTGCAGTCTAGCCCTGCACCTCTGATG
ATTTTCTGTCTGTCTGAGTCCTTTGCACCATCATGTGAGGGGCGCTGCTG
GTTTCTGTCTAGTGAAGCTAGCCTGACGGGCGACAGGTTTACCGTTTCTT
TCAAGTTGGATCACTGAGCTCACAGACCCTTCGCACTATGACAGCAATTC
TTCGGATGCCTTGGACAAGATTCGTTACATGTCTCTGACGGACAAATCCG
TGCTGGACTCGGAGCCTGAATTAGAGATCCGCCTGATTCCCGACAAGGCG
AATGGGACCCTGACCATTGAGGACACGGGGATCGGGATGACCAAAGCCGA
CCTGATCAACAATCTGGGGACCATCGCCAAGTCCGGCACGAAGGCCTTCA
TGGAGGCCCTGCAGGCAGGCGCCGATATCAGCATGATCGGGCAGTTCGGC
GTGGGTTTCTACTCGTCGTATCTGGTTGCGGacaaggtggtggtgacgaG
CAAGAACAACGACGACGAGCAATACACCTGGGTGTCCGAGGCTGGAGGTT
CCTTCACTGTCACCCCCGACACCTCCGGGAAGCCGTTGGGGAGGGGAACC
CGCATTGTCCTGCACCtgaaggaggacatgaaggAATACCTGGAGGAACG
CCGCATCAAGGACCTGGTCAAGAAGCACAGCGAATTCATCGGTTTCCCCA
TCAAGCTGTACGTGGAGAAGActacggagaaggaggtgacggacgacgag
gcagaggaggaggaggaggagaaggaaggggaggagaagcccaaggtgga
ggagatggatatggaggacgagaaggagaagaaagagaagaagacgaaga
agatcAAGGAAGTGACGCACGAGTGGGTCCACTTGAACCAGCAGAAACCG
ATCTGGATGCGGAACCCGGAGGAGATCACGCAGGAGGAGTACGCGGCTTT
CTACAAGTCCTTGACCAATGACTGGGAGGAGCACGCGGCGGTGAAACACT
TCTCGGTGGAAGGGCAGCTCGAGTTCAAGGCGGTCCTTTTCGTTCCCAAG
CGTGCGCCCTTCGACATGTTCGAGGGAGGGTCCAAGCGCAAATGCAACAA
CATCAAGTTGTACGTCCGGCGGGTCTTCATCATGGACAACTGCGAGGAAT
TGATGCCGGAATACCTCCAATTTGTCAAGGGCGTGGTCGACTCGGAGGAT
CTGCCTCTCAACATTTCCCGCGAGACGCTCCAGCAAAACAAGATTTTGAA
GGTGATCCGCAAGAACCTGGTGAAGAAGTCGATCGAACTCTTCAACGAGC
TGGCGGAAGACACGGAGAAGTACAAGAAATTCTACGAAGCCTTCGCCAAG
AACATCAAACTGGGCGTGCACGAGGACTCCACGAACAGGGCCAAGCTGGC
CAAGCTTTTGCGGTACTACTCGACCAagtcgggggaggaaatgacggGCT
TTGACGACTATCTGGCGCGCATGCCTGAGAAGCAGCCGGGGATCTACTAT
GTGACAGGCGAGAGCAAGCGCGCGGTCGAGAACTCCCCTTTCCTGGAGag
gctgaagaagaaggggtaCGAGGTCCTGTTCATGATCGACCCCATCGACG
AGTACGCGGTGCAGCAGCTCAAGGAGTACGAAGGGAAGAAACTGATTTGC
GTGACCAAGGAAGGGCTCAAgatcgacgaggacgacgaggaggaggccaa
ggccttcGAGGAGCTCAAGGCGAAGACGGAGGGTCTGTGCAAGCTCATGA
AGGAGGTCCTGGACGAGAAGGTTGATAAGGTTGTGGTGTCGCCCCGACTG
GCGGACTCCCCCTGCGTCCTAGTCACGGGGGAGTACGGATGGTCGGCCAA
CATGGAGCGGATCATGAAGGCACAGGCCTTGCGTgactcctccacctcgg
cgtACATGACGAGCAAGAAGACGATGGAGATCAATCCTAAACATCCCATC
GTCAAGGCCTTGCGcgaaaaggcggaggcgaacCAAACAGACAAGACCCT
CAAGGACTTGACCTGGCTGCTGTACGACACGTCGCTCTTGACCTCGGGCT
TCTCGTTGGACGACCCCAACACGTTCGCCTCCCGCATCCATCGGCTGATC
AAGCTGGGCTTGTCCAttgacgaggacgtggaggaggaggagggtgccgg
AGGCAAGGACGACGAGTTGCCCcccctggaagagggaggtgagggagaga
gcgcgaTGGAGACGGTAGATTAAGGACGTGATGTGTGAGGAGAGGAAATA
GGAAGCCTGAAGGTTGGTGGCTGGGTGAGCGAAGACGGGCAGTCGGGGGG
AAATATGTGTTACTTGTCAAATTCTGGAGTCTTAGATCTGAGGACCCTTT
GAGAGCAATTGGGTTTTACAGATTAGACGAAAGAGGTTCGAGGTGAATAA
CTCGTTTTCACGTGGCTgtcgggggaagggcgagagcTGGGAACAGGGAG
AAACGAGGCAGGTGCCGCAGCATGTTTCATAACTAACGGCGTATCAGAAC
CAGTCACAGAATCTCGCAAAGAGAAGTGCGTAGGTTGATCTTTTTTCCTC
GATCGTGCCGTGTCAAGAAGGAGTATCCAGATGCCGAACGCCTGAGGGCG
ATCTTAGAGGAAGGAACAGAGGCCGAAAGGAAAGATGGTAGTATGTAGGA
TGTGTTATGAATTCTCCCCTCTGCTGCAAGAGCCCACGACCTTATGAGAA
AAGAAACCCGAAAAACGAGGAAAACAACTCATGCTACGTAGACGGTGGAA
GTGCTCTTTTTTTATCTTGATTTTTCGGGTTTGATTTGTATTTTTCGGGT
TCGATCTGTTTCGACACTGCCATGCGGCCACCCTGTCCCTGGATAGGAGT
GATGGGCAGAGAGAAAAGACAACTTCCACTGCCAGTTCACAGAAAAGAAT
GTGTAGACGCACAATAACCGTTGGG

Coding sequence (CDS) from alignment at CM002456.1:1136635..1140409+

>rna1077 ID=rna1077|Name=rna1077|organism=Nannochloropsis gaditana|type=CDS|length=4284bp|location=Sequence derived from alignment at CM002456.1:1136635..1140409+ (Nannochloropsis gaditana)
ATGTCTGGCGATGCCGAAACATTTGCCTTCTCGGCGGATATCAATCAATT
GCTATCCCTGATTATCAACACCTTCTACTCCAACAAGGAAATTTTCCTTC
GCGAACTCATCAGCAATTCTTCGGATGCCTTGGACAAGATTCGTTACATG
TCTCTGACGGACAAATCCGTGCTGGACTCGGAGCCTGAATTAGAGATCCG
CCTGATTCCCGACAAGGCGAATGGGACCCTGACCATTGAGGACACGGGGA
TCGGGATGACCAAAGCCGACCTGATCAACAATCTGGGGACCATCGCCAAG
TCCGGCACGAAGGCCTTCATGGAGGCCCTGCAGGCAGGCGCCGATATCAG
CATGATCGGGCAGTTCGGCGTGGGTTTCTACTCGTCGTATCTGGTTGCGG
acaaggtggtggtgacgaGCAAGAACAACGACGACGAGCAATACACCTGG
GTGTCCGAGGCTGGAGGTTCCTTCACTGTCACCCCCGACACCTCCGGGAA
GCCGTTGGGGAGGGGAACCCGCATTGTCCTGCACCtgaaggaggacatga
aggAATACCTGGAGGAACGCCGCATCAAGGACCTGGTCAAGAAGCACAGC
GAATTCATCGGTTTCCCCATCAAGCTGTACGTGGAGAAGActacggagaa
ggaggtgacggacgacgaggcagaggaggaggaggaggagaaggaagggg
aggagaagcccaaggtggaggagatggatatggaggacgagaaggagaag
aaagagaagaagacgaagaagatcAAGGAAGTGACGCACGAGTGGGTCCA
CTTGAACCAGCAGAAACCGATCTGGATGCGGAACCCGGAGGAGATCACGC
AGGAGGAGTACGCGGCTTTCTACAAGTCCTTGACCAATGACTGGGAGGAG
CACGCGGCGGTGAAACACTTCTCGGTGGAAGGGCAGCTCGAGTTCAAGGC
GGTCCTTTTCGTTCCCAAGCGTGCGCCCTTCGACATGTTCGAGGGAGGGT
CCAAGCGCAAATGCAACAACATCAAGTTGTACGTCCGGCGGGTCTTCATC
ATGGACAACTGCGAGGAATTGATGCCGGAATACCTCCAATTTGTCAAGGG
CGTGGTCGACTCGGAGGATCTGCCTCTCAACATTTCCCGCGAGACGCTCC
AGCAAAACAAGATTTTGAAGGTGATCCGCAAGAACCTGGTGAAGAAGTCG
ATCGAACTCTTCAACGAGCTGGCGGAAGACACGGAGAAGTACAAGAAATT
CTACGAAGCCTTCGCCAAGAACATCAAACTGGGCGTGCACGAGGACTCCA
CGAACAGGGCCAAGCTGGCCAAGCTTTTGCGGTACTACTCGACCAagtcg
ggggaggaaatgacggGCTTTGACGACTATCTGGCGCGCATGCCTGAGAA
GCAGCCGGGGATCTACTATGTGACAGGCGAGAGCAAGCGCGCGGTCGAGA
ACTCCCCTTTCCTGGAGaggctgaagaagaaggggtaCGAGGTCCTGTTC
ATGATCGACCCCATCGACGAGTACGCGGTGCAGCAGCTCAAGGAGTACGA
AGGGAAGAAACTGATTTGCGTGACCAAGGAAGGGCTCAAgatcgacgagg
acgacgaggaggaggccaaggccttcGAGGAGCTCAAGGCGAAGACGGAG
GGTCTGTGCAAGCTCATGAAGGAGGTCCTGGACGAGAAGGTTGATAAGGT
TGTGGTGTCGCCCCGACTGGCGGACTCCCCCTGCGTCCTAGTCACGGGGG
AGTACGGATGGTCGGCCAACATGGAGCGGATCATGAAGGCACAGGCCTTG
CGTgactcctccacctcggcgtACATGACGAGCAAGAAGACGATGGAGAT
CAATCCTAAACATCCCATCGTCAAGGCCTTGCGcgaaaaggcggaggcga
acCAAACAGACAAGACCCTCAAGGACTTGACCTGGCTGCTGTACGACACG
TCGCTCTTGACCTCGGGCTTCTCGTTGGACGACCCCAACACGTTCGCCTC
CCGCATCCATCGGCTGATCAAGCTGGGCTTGTCCAttgacgaggacgtgg
aggaggaggagggtgccggAGGCAAGGACGACGAGTTGCCCcccctggaa
gagggaggtgagggagagagcgcgaTGGAGACGGTAGATTAAATGTCTGG
CGATGCCGAAACATTTGCCTTCTCGGCGGATATCAATCAATTGCTATCCC
TGATTATCAACACCTTCTACTCCAACAAGGAAATTTTCCTTCGCGAACTC
ATCAGCAATTCTTCGGATGCCTTGGACAAGATTCGTTACATGTCTCTGAC
GGACAAATCCGTGCTGGACTCGGAGCCTGAATTAGAGATCCGCCTGATTC
CCGACAAGGCGAATGGGACCCTGACCATTGAGGACACGGGGATCGGGATG
ACCAAAGCCGACCTGATCAACAATCTGGGGACCATCGCCAAGTCCGGCAC
GAAGGCCTTCATGGAGGCCCTGCAGGCAGGCGCCGATATCAGCATGATCG
GGCAGTTCGGCGTGGGTTTCTACTCGTCGTATCTGGTTGCGGacaaggtg
gtggtgacgaGCAAGAACAACGACGACGAGCAATACACCTGGGTGTCCGA
GGCTGGAGGTTCCTTCACTGTCACCCCCGACACCTCCGGGAAGCCGTTGG
GGAGGGGAACCCGCATTGTCCTGCACCtgaaggaggacatgaaggAATAC
CTGGAGGAACGCCGCATCAAGGACCTGGTCAAGAAGCACAGCGAATTCAT
CGGTTTCCCCATCAAGCTGTACGTGGAGAAGActacggagaaggaggtga
cggacgacgaggcagaggaggaggaggaggagaaggaaggggaggagaag
cccaaggtggaggagatggatatggaggacgagaaggagaagaaagagaa
gaagacgaagaagatcAAGGAAGTGACGCACGAGTGGGTCCACTTGAACC
AGCAGAAACCGATCTGGATGCGGAACCCGGAGGAGATCACGCAGGAGGAG
TACGCGGCTTTCTACAAGTCCTTGACCAATGACTGGGAGGAGCACGCGGC
GGTGAAACACTTCTCGGTGGAAGGGCAGCTCGAGTTCAAGGCGGTCCTTT
TCGTTCCCAAGCGTGCGCCCTTCGACATGTTCGAGGGAGGGTCCAAGCGC
AAATGCAACAACATCAAGTTGTACGTCCGGCGGGTCTTCATCATGGACAA
CTGCGAGGAATTGATGCCGGAATACCTCCAATTTGTCAAGGGCGTGGTCG
ACTCGGAGGATCTGCCTCTCAACATTTCCCGCGAGACGCTCCAGCAAAAC
AAGATTTTGAAGGTGATCCGCAAGAACCTGGTGAAGAAGTCGATCGAACT
CTTCAACGAGCTGGCGGAAGACACGGAGAAGTACAAGAAATTCTACGAAG
CCTTCGCCAAGAACATCAAACTGGGCGTGCACGAGGACTCCACGAACAGG
GCCAAGCTGGCCAAGCTTTTGCGGTACTACTCGACCAagtcgggggagga
aatgacggGCTTTGACGACTATCTGGCGCGCATGCCTGAGAAGCAGCCGG
GGATCTACTATGTGACAGGCGAGAGCAAGCGCGCGGTCGAGAACTCCCCT
TTCCTGGAGaggctgaagaagaaggggtaCGAGGTCCTGTTCATGATCGA
CCCCATCGACGAGTACGCGGTGCAGCAGCTCAAGGAGTACGAAGGGAAGA
AACTGATTTGCGTGACCAAGGAAGGGCTCAAgatcgacgaggacgacgag
gaggaggccaaggccttcGAGGAGCTCAAGGCGAAGACGGAGGGTCTGTG
CAAGCTCATGAAGGAGGTCCTGGACGAGAAGGTTGATAAGGTTGTGGTGT
CGCCCCGACTGGCGGACTCCCCCTGCGTCCTAGTCACGGGGGAGTACGGA
TGGTCGGCCAACATGGAGCGGATCATGAAGGCACAGGCCTTGCGTgactc
ctccacctcggcgtACATGACGAGCAAGAAGACGATGGAGATCAATCCTA
AACATCCCATCGTCAAGGCCTTGCGcgaaaaggcggaggcgaacCAAACA
GACAAGACCCTCAAGGACTTGACCTGGCTGCTGTACGACACGTCGCTCTT
GACCTCGGGCTTCTCGTTGGACGACCCCAACACGTTCGCCTCCCGCATCC
ATCGGCTGATCAAGCTGGGCTTGTCCAttgacgaggacgtggaggaggag
gagggtgccggAGGCAAGGACGACGAGTTGCCCcccctggaagagggagg
tgagggagagagcgcgaTGGAGACGGTAGATTAA

Synonyms

Publications